BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0020.p (134 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65IY1.1 Q65IY1_BACLD Putative uncharacterized protein 213 3e-54 Q9Z9W2.1 Q9Z9W2_BACHD Similar to B.subtilis ywgB gene(27%-identity) 204 3e-51 B1DK49.1 B1DK49_9BACL Transcriptional regulator, BadM/Rrf2 family 183 4e-45 C3KUZ5.1 C3KUZ5_CLOB6 RRF2 family protein 183 5e-45 B1QHX6.1 B1QHX6_CLOBO Oligopeptide transport system permease pro... 183 5e-45 >Q65IY1.1 Q65IY1_BACLD Putative uncharacterized protein Length = 133 Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 102/132 (77%), Positives = 115/132 (87%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHTML+L A APN +GVQQLAERQ VSPTYLSKILTKL KA +IESASG Sbjct: 1 MKYSKATNYALHTMLFLAAGAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESASG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 ANGGYRLKR E+ISFLDIIHAIEGTASLFDC LNH S+C IQ+ MV AE +ME YL+ + Sbjct: 61 ANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNHGSECVIQKVMVSAEDEMENYLRQQ 120 Query: 123 KMSELAEKITVD 134 K+S+LA+KITV+ Sbjct: 121 KISDLAKKITVE 132 >Q9Z9W2.1 Q9Z9W2_BACHD Similar to B.subtilis ywgB gene(27%-identity) Length = 132 Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 97/132 (73%), Positives = 112/132 (84%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHT+L+L AA P+K +GVQQLAERQ VSPTYLSKILTKL KA +IES SG Sbjct: 1 MKYSKATNYALHTVLFLAAATPSKFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESVSG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 ANGGYRLKR EEISFLD+IHAIEGTASLFDC LNH S+C IQ+ MV AE +ME YL+ + Sbjct: 61 ANGGYRLKRDWEEISFLDVIHAIEGTASLFDCDLNHGSECLIQKVMVSAEEKMEDYLREQ 120 Query: 123 KMSELAEKITVD 134 K+++L +KI D Sbjct: 121 KIADLTKKIAGD 132 >B1DK49.1 B1DK49_9BACL Transcriptional regulator, BadM/Rrf2 family Length = 127 Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 84/125 (67%), Positives = 108/125 (86%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHTM +L+AAAP++P+GVQQLA++QGVSPTYLSKILTKLVKA LIESASG Sbjct: 1 MKYSKATNYALHTMAFLIAAAPDRPVGVQQLADKQGVSPTYLSKILTKLVKAGLIESASG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 ANGGYR + ++E+ISFLD+I AIEGTAS+F+C + + +C I + M+ AE M+Q+L+N Sbjct: 61 ANGGYRARGKKEDISFLDVIQAIEGTASIFECCHSENPECRIHRVMLSAEDAMDQHLRNT 120 Query: 123 KMSEL 127 K+ +L Sbjct: 121 KLVDL 125 >C3KUZ5.1 C3KUZ5_CLOB6 RRF2 family protein Length = 133 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 86/132 (65%), Positives = 108/132 (81%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHTML+L PNK +GVQ+LAE+Q VSPTYLSKILTKLVK +I S+SG Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 NGGY L + E+ISFLDIIHAIEG +SLFDC L+ S+C I++ M+ AE++ME+ L+N+ Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSPSECVIKKVMLSAEKKMEEELRNQ 120 Query: 123 KMSELAEKITVD 134 K+S+L +KI VD Sbjct: 121 KISDLVKKIPVD 132 >B1QHX6.1 B1QHX6_CLOBO Oligopeptide transport system permease protein OppB Length = 133 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 86/132 (65%), Positives = 108/132 (81%) Query: 3 MKYSKATNYALHTMLYLVAAAPNKPIGVQQLAERQGVSPTYLSKILTKLVKADLIESASG 62 MKYSKATNYALHTML+L PNK +GVQ+LAE+Q VSPTYLSKILTKLVK +I S+SG Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60 Query: 63 ANGGYRLKRRQEEISFLDIIHAIEGTASLFDCTLNHSSKCPIQQEMVEAERQMEQYLQNK 122 NGGY L + E+ISFLDIIHAIEG +SLFDC L+ S+C I++ M+ AE++ME+ L+N+ Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSPSECVIKKVMLSAEKKMEEELRNQ 120 Query: 123 KMSELAEKITVD 134 K+S+L +KI VD Sbjct: 121 KISDLVKKIPVD 132 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 680,482,686 Number of extensions: 23738998 Number of successful extensions: 86674 Number of sequences better than 1.0e-05: 1594 Number of HSP's gapped: 86876 Number of HSP's successfully gapped: 1594 Length of query: 134 Length of database: 3,060,696,203 Length adjustment: 98 Effective length of query: 36 Effective length of database: 2,137,436,733 Effective search space: 76947722388 Effective search space used: 76947722388 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)