BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0019.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65IY2.1 Q65IY2_BACLD SAM dependent methyltranferase 347 1e-93 B3KDA9.1 B3KDA9_9BACI Putative uncharacterized protein 335 4e-90 B9CPE8.1 B9CPE8_STACP SAM dependent methyltranferase 173 2e-41 Q0AXM9.1 Q0AXM9_SYNWW Putative uncharacterized protein 135 5e-30 Q2RHZ2.1 Q2RHZ2_MOOTA Putative uncharacterized protein 120 1e-25 >Q65IY2.1 Q65IY2_BACLD SAM dependent methyltranferase Length = 296 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 163/293 (55%), Positives = 209/293 (71%) Query: 1 MMNDLFNADVWEKAWKEDPAAMGNRFKQSGMDMARAFDHKAKSFNEEVFXXXXXXXXXXX 60 M+N+ F VWE+AWKED N+ K++GMD FD +AKSFNE+ F Sbjct: 1 MINEFFKETVWEEAWKEDQQTAVNKMKKAGMDKVHHFDLRAKSFNEQAFNEEGRKRTKRI 60 Query: 61 XXWLEGQGVDFEGLSVLDVGAASGGFTVPFADRGAKVTAVEPNHPLAGLFIENTARFGPG 120 WLEGQGV F+ S+LD+GAASGGFTVPFA+RGA+VTAVEP+ PL L EN G Sbjct: 61 MKWLEGQGVTFKDTSILDIGAASGGFTVPFAERGAEVTAVEPSLPLVELMKENITGITNG 120 Query: 121 QVELVHDLFEHVDLDAKGWKGAFDLVFASMTPVVVDWESVESVLSCARKYCYISLNAGGR 180 +V++V + FE +D+ AKGW AFD VF SM P + DWESV+ VLSCAR++CYISL+AG R Sbjct: 121 KVKIVAEPFEDIDIQAKGWGNAFDFVFVSMCPAIADWESVKRVLSCARQFCYISLSAGSR 180 Query: 181 EFSLLNEVLPLLNGQTLPAKSSDMAYLTHLLYLKGYSFESLITREMKTTELSSGEAIEET 240 E SLLNE+ PL++ Q L + S+MAYL HLL+LKGY++ESL+TREMKT E+S A+ E Sbjct: 181 EHSLLNEIWPLVSDQPLKNEHSEMAYLLHLLFLKGYTYESLVTREMKTREVSRETALNEV 240 Query: 241 LMLLKHHKLPADEAPRRTVTEYVHRTYPDGKVQVQQGGRFGKVLIRLQELNMY 293 + +L+ LPAD+ R+ Y+ RTYP+ KV+++QGGRFGKVLIRLQ NMY Sbjct: 241 MDMLRMFGLPADDRNRKITAAYLERTYPNDKVEIRQGGRFGKVLIRLQNQNMY 293 >B3KDA9.1 B3KDA9_9BACI Putative uncharacterized protein Length = 301 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 157/293 (53%), Positives = 208/293 (70%) Query: 2 MNDLFNADVWEKAWKEDPAAMGNRFKQSGMDMARAFDHKAKSFNEEVFXXXXXXXXXXXX 61 MND FN +WE+AWKE ++ N+ K++G++ ARAFDHKA++FNE+ F Sbjct: 1 MNDFFNEAIWEQAWKEHGDSVINKMKKAGIEPARAFDHKARTFNEQSFNEEGRKRTSRIM 60 Query: 62 XWLEGQGVDFEGLSVLDVGAASGGFTVPFADRGAKVTAVEPNHPLAGLFIENTARFGPGQ 121 WLEGQGV F+ SVLD+GAASG F+VPFA+RGA VTAVE + PL L EN F Q Sbjct: 61 NWLEGQGVRFDNASVLDIGAASGVFSVPFAERGADVTAVESSLPLIDLLKENITNFPQDQ 120 Query: 122 VELVHDLFEHVDLDAKGWKGAFDLVFASMTPVVVDWESVESVLSCARKYCYISLNAGGRE 181 V++V + FE +D+ AKGW AFDLVF SM PV+VDW+SVE VL CAR++CYIS+ AG E Sbjct: 121 VKIVPERFEDIDVQAKGWSQAFDLVFLSMCPVIVDWQSVEKVLQCAREFCYISMPAGSTE 180 Query: 182 FSLLNEVLPLLNGQTLPAKSSDMAYLTHLLYLKGYSFESLITREMKTTELSSGEAIEETL 241 SL+NE+ PL+ Q +K + YL HLLYLKGYS+ESL+TRE KTTE+SS A++E + Sbjct: 181 ISLMNEIWPLITDQPYRSKHMEFGYLLHLLYLKGYSYESLVTRETKTTEVSSEAALQEIM 240 Query: 242 MLLKHHKLPADEAPRRTVTEYVHRTYPDGKVQVQQGGRFGKVLIRLQELNMYS 294 L+ H D+ R+ +T+Y+ + YP GKV ++Q GR+GKVL+RLQ+ +MYS Sbjct: 241 NWLRGHGQVPDDQKRKLITDYLEQAYPSGKVTIRQSGRYGKVLVRLQDESMYS 293 >B9CPE8.1 B9CPE8_STACP SAM dependent methyltranferase Length = 286 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 165/289 (57%), Gaps = 10/289 (3%) Query: 4 DLFNADVWEKAWKEDPAAMGNRFKQSGMDMARA--FDHKAKSFNEEVFXXXXXXXXXXXX 61 ++F+ W++AW DP R K++G+ A F+ A++FN+ F Sbjct: 5 NIFDQQFWKEAWDNDPNTQDKRMKRAGLGQPDAPGFEKWAENFNKNSFTEESQKRVNRIM 64 Query: 62 XWLEGQGVDFEGLSVLDVGAASGGFTVPFADRGAKVTAVEPNHPLAGLFIENTARFGPGQ 121 W++ Q FE LS+LDVGAASG F++PF+ AKVT++EP+ L + +N +G + Sbjct: 65 SWIQNQTGGFENLSILDVGAASGVFSIPFSKESAKVTSLEPSSILHDMLKDNAQHYGV-E 123 Query: 122 VELVHDLFEHVD-LDAKGWKGAFDLVFASMTPVVVDWESVESVLSCARKYCYISLNAGGR 180 +E +++ FE+++ D K FDLVFASM P V WE+VE + A +Y Y+SL AG + Sbjct: 124 IETINESFENIETTDIK----KFDLVFASMCPAVTTWEAVEKAIDIAHQYVYVSLIAGPK 179 Query: 181 EFSLLNEVLPLLNGQTLPAKSSDMAYLTHLLYLKGYSFESLITREMKTTELSSGEAIEET 240 E S+++EV+ L + P ++D+ YL LLY Y++E+LI R + E S E + + Sbjct: 180 ENSIVDEVVAFLELEPSPM-TADLYYLLQLLYCNNYTYETLIERHTQHAEKSVDEVMRQL 238 Query: 241 LMLLKHHKLPADEAPRRTVTEYVHRTYPDGKVQVQQGGRFGKVLIRLQE 289 LK ++ + + ++ +Y+ Y + V V GG+FGKVLI LQ+ Sbjct: 239 PSWLKEVEIEMNAQQKESIEQYLRDKYGN-HVPVVTGGKFGKVLITLQD 286 >Q0AXM9.1 Q0AXM9_SYNWW Putative uncharacterized protein Length = 286 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 142/284 (50%), Gaps = 3/284 (1%) Query: 2 MNDLFNADVWEKAWKEDPAAMGNRFKQSGMDMARAFDHKAKSF-NEEVFXXXXXXXXXXX 60 M++LF + WE+ W E + NR++ ++ +A+ F N + Sbjct: 1 MDELFIPEFWERKWIEFKSK-NNRYRGQCKTAGEYWNQRAEGFANSTIKSDSRQERTREV 59 Query: 61 XXWLEGQGVDFEGLSVLDVGAASGGFTVPFADRGAKVTAVEPNHPLAGLFIENTARFGPG 120 +LE G+ ++VLD+G+ G F +P A+RGA+V A++P + + EN PG Sbjct: 60 FSFLELFGIIKSDMTVLDIGSGPGSFAIPLAERGARVVALDPASRMLEILQENLPPSMPG 119 Query: 121 QVELVHDLFEHVDLDAKGWKGAFDLVFASMTPVVVDWESVESVLSCARKYCYISLNAGGR 180 V V L+E D++ +GW+ FDLVFASM+P V + E+++ ++ C+R++CY+S +G R Sbjct: 120 SVNCVQALWEDYDVENRGWENKFDLVFASMSPGVNNLETLQKMMFCSRRWCYLSGFSGTR 179 Query: 181 EFSLLNEVLPLLNGQTLPAKSSDMAYLTHLLYLKGYSFESLITREMKTTELSSGEAIEET 240 +SL NEV + G +D+ + +LLY G ++ + + E Sbjct: 180 NYSLYNEVFKQITGGPYINHFNDIIFPFNLLYTLGCEPSIKLSHSSNHLKQKVTDFRREI 239 Query: 241 LMLLKHHKLPADEAPRRTVTEYVHRTYPDGKVQVQQGGRFGKVL 284 +L++ +L EA V + + R G ++ + R G ++ Sbjct: 240 CEILENKELLNTEA-ESVVEQLIERHASQGSIRQEVSSRVGMII 282 >Q2RHZ2.1 Q2RHZ2_MOOTA Putative uncharacterized protein Length = 292 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 2/267 (0%) Query: 5 LFNADVWEKAWKEDPAAMGNRFKQSGMDMARAFDHKAKSFNEEVFXXXXXXXXXXXXXWL 64 L AD WE+AW+E+ ++ D + ++ +A F + WL Sbjct: 9 LERADFWEEAWREEHRNSLYGRRRPERDGSAYWNRRAGHFARQTGSEEGKQRVAGILHWL 68 Query: 65 EGQGVDFEGLSVLDVGAASGGFTVPFADRGAKVTAVEPNHPLAGLFIENTARFGPGQVEL 124 G + L VLD+G +G + +P A R +V A++P + + E A G VE Sbjct: 69 GHHGGLEKDLEVLDIGCGTGNYALPLARRARRVVALDPAAEMLAILKEKAAAEGINNVEP 128 Query: 125 VHDLFEHVDLDAKGWKGAFDLVFASMTPVVVDWESVESVLSCARKYCYISLNAGGREFSL 184 + +E VDL+ +GW+ AFDLV A M+P + D +++ +++ +R C+++ + +E S Sbjct: 129 IQMAWEEVDLEKQGWREAFDLVLALMSPGIKDAATLQKMMAASRGACFLAGHV-RQEISG 187 Query: 185 LNEVLPLLNGQTLPAKSSDMAYLTHLLYLKGYSFESLITREMKTTELSSGEAIEETLMLL 244 E+ L G +P +D+ Y+ HLLY GY+ + ++ T EL +AIEE + Sbjct: 188 RRELWQELIGGEMPPIPADVLYIFHLLYAWGYNPSLELEHKVSTRELEPDQAIEEMEIFF 247 Query: 245 KHHKLPADEAPRRTVTEYVHRTYPDGK 271 H L A RR + +V +G+ Sbjct: 248 YPH-LELTPAVRRAIINHVQANTVNGR 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,763,753,746 Number of extensions: 70526172 Number of successful extensions: 170581 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 170590 Number of HSP's successfully gapped: 40 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)