BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0016.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5YD38.1 B5YD38_DICT6 Transcriptional regulator 126 3e-27 B8DZS8.1 B8DZS8_DICTD Transcriptional regulator, LacI family 122 5e-26 B2HAL7.1 B2HAL7_BURPS Transcriptional regulator, lacI family 114 2e-23 Q63II4.1 Q63II4_BURPS LacI family regulatory protein 112 5e-23 A3P941.1 A3P941_BURP0 Transcriptional regulator, lacI family 112 5e-23 >B5YD38.1 B5YD38_DICT6 Transcriptional regulator Length = 337 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 177/345 (51%), Gaps = 25/345 (7%) Query: 3 KKRVTSRDVAKLAGVSRSVVSAVLNGTPGIGVSGETRENVLAAIRELNYHVDAQARSMKT 62 KK TS DVA+LAGVSRS VS VLN TPGI +S ETR+ VL A++ L+Y +A ARS+ Sbjct: 5 KKAPTSWDVARLAGVSRSTVSFVLNNTPGIKISEETRKRVLEAVKALDYKPNAIARSLAK 64 Query: 63 GRTMSLAAFG-DTRHPLFMRLLEGMQRECEAHGYHILLCSPGHRPDGEARSEL--VDLYH 119 +T ++A F D +P+F + G++ +GY +LLC+ DG++ EL +++ Sbjct: 65 QKTEAIAFFVLDIANPVFPNMARGIEDVARQNGYILLLCN----TDGKSLRELRYMNIML 120 Query: 120 QRKIDGIVTLDNTSYRDEAWAAKVSEAGVPYVSVEGYAEAEGVCSVLADYKGSVELALDY 179 +R++DGI+ + +E + + +P V +E E + KGS E A+ + Sbjct: 121 ERRVDGIIA---GALSNEEVSKIAQKKNMPLVILEHPRLQEHDVVYADNVKGSYE-AVMH 176 Query: 180 LLRPGTPQLQTPVYAEVYHGSIR--SWAERTRRDAYIRWCSERGMNPFFFRLPE-REGRV 236 L+ G + + H +I S + R + Y + + G+ PF L + G+V Sbjct: 177 LIELG--------HNRIAHITINPESIIVQERIEGYKKALEDAGI-PFDADLLKIFYGKV 227 Query: 237 DWEEWLLKLADISKPPPPLLVNWSSGVPDLYRAAHKLGLRIGEELRVMAADNTIQGHRLS 296 D E + +L + PP + + + + G RI +++ V+ D+T+ L+ Sbjct: 228 DEESAINELFSLPDPPTAIFTFSDFMAIQVMKILIRRGYRIPDDISVVGFDDTLAN--LT 285 Query: 297 LPALSCVEIPYVGMGVEAVRCVLKQIEGGAAPEAAGKIWLPAVLR 341 +PAL+ V P+ MG +A ++++++ P K+ V+R Sbjct: 286 IPALTTVSQPFYEMGAKAAEILIERLKNPNMPIQHVKLPTKLVIR 330 >B8DZS8.1 B8DZS8_DICTD Transcriptional regulator, LacI family Length = 337 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 103/350 (29%), Positives = 174/350 (49%), Gaps = 27/350 (7%) Query: 3 KKRVTSRDVAKLAGVSRSVVSAVLNGTPGIGVSGETRENVLAAIRELNYHVDAQARSMKT 62 KK TS DVA+LAGVSRS VS VLN TPGI +S ETR VL A++ L+Y +A ARS+ Sbjct: 5 KKAPTSWDVARLAGVSRSTVSFVLNNTPGIKISEETRRRVLEAVKALDYKPNAIARSLAK 64 Query: 63 GRTMSLAAFG-DTRHPLFMRLLEGMQRECEAHGYHILLCSPGHRPDGEARSEL--VDLYH 119 +T ++A F D +P+F + G++ +GY + LC+ DG+ E+ +++ Sbjct: 65 QKTEAIAFFVLDIANPVFPNMARGIEDVARQNGYTLFLCN----TDGKTLREVRYMNIML 120 Query: 120 QRKIDGIVTLDNTSYRDEAWAAKVSEAGVPYVSVEGYAEAEGVCSVLADYKGSVELALDY 179 +R++DGI+ + +E + + +P V +E E + KGS E A+ + Sbjct: 121 ERRVDGIIA---GALSNEEVSKIAQKKNIPLVILEHPRLPEHDVVYADNVKGSYE-AVMH 176 Query: 180 LLRPGTPQLQTPVYAEVYHGSIR--SWAERTRRDAYIRWCSERGMNPFFFRLPE-REGRV 236 + G + + H +I S + R + Y + + G+ PF L + +V Sbjct: 177 FVELG--------HKRIAHITINPESIIVQERIEGYKKALEDAGI-PFDDNLLKIFYDKV 227 Query: 237 DWEEWLLKLADISKPPPPLLVNWSSGVPDLYRAAHKLGLRIGEELRVMAADNTIQGHRLS 296 D E+ + +L + PP + + + + G RI E++ V+ D+T+ L+ Sbjct: 228 DEEKAINELFSLPDPPTAIFTFSDFMAIQVMKILIRRGYRIPEDVSVIGFDDTLAN--LT 285 Query: 297 LPALSCVEIPYVGMGVEAVRCVLKQIEGGAAPEAAGKIWLPAVLRAGESA 346 +PAL+ V P+ MG +A ++++++ P I LP L ES Sbjct: 286 IPALTTVSQPFYEMGAKAAEILIERLKNPNMP--IQHIKLPTKLVIREST 333 >B2HAL7.1 B2HAL7_BURPS Transcriptional regulator, lacI family Length = 352 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 160/350 (45%), Gaps = 25/350 (7%) Query: 4 KRVTSRDVAKLAGVSRSVVSAVLNGTPGIGVSGETRENVLAAIRELNYHVDAQARSMKTG 63 R+TS VA+LAGVSR+ VS VLNG G+G+S ETR VLAA R+L Y +A ARS+ +G Sbjct: 2 SRITSIQVAQLAGVSRTTVSFVLNGITGMGISEETRNRVLAAARKLGYVPNAMARSLASG 61 Query: 64 RTMSLA---AFGDTRH----PLFMRLLEGMQRECEAHGYHILL--CSPGHRPDGEARSEL 114 T ++A +GD H R L G+ C A GY ++L HRP Sbjct: 62 STKTIALLMPYGDHIHVDVDAYLPRFLAGLSAACHATGYKVILEPVKESHRP-----GAF 116 Query: 115 VDLYHQRKIDGIVTLDNTSYRDEAWAAKVSEAGVPYVSV-EGYAEAEGVCSVLADYKGSV 173 +DL + +IDG+V L N D+ +++ G P V E + +C++ D + + Sbjct: 117 LDLVNSGRIDGLVVL-NPRKLDDGHLHELAHKGFPLVVFGSNLTETKSMCAIGIDNRSAA 175 Query: 174 ELALDYLLRPGTPQLQTPVYAEVYHGSIRSWAERTRRDAYIRWCSERGMN--PFFFRLPE 231 + A ++LL G ++ A + S R R D + RG++ P + + Sbjct: 176 QRATEHLLHLGHERI-----AHIGFASDDYQVVRDRLDGFRLAMETRGLDVRPEWIAFAD 230 Query: 232 REGRVDWEEWLLKLADISKPPPPLLVNWSSGVPDLYRAAHKLGLRIGEELRVMAADNTIQ 291 + +E LA S+ N + + A +GLR+ ++L V+ D+ I Sbjct: 231 YSAQSGYEAMRKMLAQPSRMTALFAGNDTVAFGAM-AAIRDVGLRVPDDLAVVGYDD-IP 288 Query: 292 GHRLSLPALSCVEIPYVGMGVEAVRCVLKQIEGGAAPEAAGKIWLPAVLR 341 ++P L+ V G +A +L I G + P ++R Sbjct: 289 LAAFAMPPLTTVRTEPFKEGNDAAATLLGLIAGNPVDGLHSRGLAPLIVR 338 >Q63II4.1 Q63II4_BURPS LacI family regulatory protein Length = 352 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 159/350 (45%), Gaps = 25/350 (7%) Query: 4 KRVTSRDVAKLAGVSRSVVSAVLNGTPGIGVSGETRENVLAAIRELNYHVDAQARSMKTG 63 R+TS VA+LAGVSR+ VS VLNG G+G+S ETR VLAA R+L Y +A ARS+ +G Sbjct: 2 SRITSIQVAQLAGVSRTTVSFVLNGITGMGISEETRNRVLAAARKLGYVPNAMARSLASG 61 Query: 64 RTMSLA---AFGDTRH----PLFMRLLEGMQRECEAHGYHILL--CSPGHRPDGEARSEL 114 T ++A +GD H R L G+ C A GY ++L HRP Sbjct: 62 STKTIALLMPYGDHIHVDVDAYLPRFLAGLSAACHATGYKVILEPVKESHRP-----GAF 116 Query: 115 VDLYHQRKIDGIVTLDNTSYRDEAWAAKVSEAGVPYVSV-EGYAEAEGVCSVLADYKGSV 173 +DL + +IDG+V L N D+ +++ G P V E + +C++ D + + Sbjct: 117 LDLVNSGRIDGLVVL-NPRKLDDGHLHELAHKGFPLVVFGSNLTETKSMCAIGIDNRSAA 175 Query: 174 ELALDYLLRPGTPQLQTPVYAEVYHGSIRSWAERTRRDAYIRWCSERGMN--PFFFRLPE 231 + A ++LL G ++ A + S R R D + RG++ P + + Sbjct: 176 QRATEHLLHLGHERI-----AHIGFASDDYQVVRDRLDGFRLAMETRGLDVRPEWIAFAD 230 Query: 232 REGRVDWEEWLLKLADISKPPPPLLVNWSSGVPDLYRAAHKLGLRIGEELRVMAADNTIQ 291 + +E LA S+ N + + A +GLR+ ++L V+ D+ I Sbjct: 231 YSAQSGYEAMRKMLAQPSRMTALFAGNDTVAFGAM-AAIRDVGLRVPDDLAVVGYDD-IP 288 Query: 292 GHRLSLPALSCVEIPYVGMGVEAVRCVLKQIEGGAAPEAAGKIWLPAVLR 341 + P L+ V G +A +L I G + P ++R Sbjct: 289 LAAFATPPLTTVRTEPFKEGNDAAATLLGLIAGNPVDGLHSRGLAPLIVR 338 >A3P941.1 A3P941_BURP0 Transcriptional regulator, lacI family Length = 352 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 159/350 (45%), Gaps = 25/350 (7%) Query: 4 KRVTSRDVAKLAGVSRSVVSAVLNGTPGIGVSGETRENVLAAIRELNYHVDAQARSMKTG 63 R+TS VA+LAGVSR+ VS VLNG G+G+S ETR VLAA R+L Y +A ARS+ +G Sbjct: 2 SRITSIQVAQLAGVSRTTVSFVLNGITGMGISEETRNRVLAAARKLGYVPNAMARSLASG 61 Query: 64 RTMSLA---AFGDTRH----PLFMRLLEGMQRECEAHGYHILL--CSPGHRPDGEARSEL 114 T ++A +GD H R L G+ C A GY ++L HRP Sbjct: 62 STKTIALLMPYGDHIHVDVDAYLPRFLAGLSAACHATGYKVILEPVKESHRP-----GAF 116 Query: 115 VDLYHQRKIDGIVTLDNTSYRDEAWAAKVSEAGVPYVSV-EGYAEAEGVCSVLADYKGSV 173 +DL + +IDG+V L N D+ +++ G P V E + +C++ D + + Sbjct: 117 LDLVNSGRIDGLVVL-NPRKLDDGHLHELAHKGFPLVVFGSNLTETKSMCAIGIDNRSAA 175 Query: 174 ELALDYLLRPGTPQLQTPVYAEVYHGSIRSWAERTRRDAYIRWCSERGMN--PFFFRLPE 231 + A ++LL G ++ A + S R R D + RG++ P + + Sbjct: 176 QRATEHLLHLGHERI-----AHIGFASDDYQVVRDRLDGFRLAMETRGLDVRPEWIAFAD 230 Query: 232 REGRVDWEEWLLKLADISKPPPPLLVNWSSGVPDLYRAAHKLGLRIGEELRVMAADNTIQ 291 + +E LA S+ N + + A +GLR+ ++L V+ D+ I Sbjct: 231 YSAQSGYEAMRKMLAQPSRMTALFAGNDTVAFGAM-AAIRDVGLRVPDDLAVVGYDD-IP 288 Query: 292 GHRLSLPALSCVEIPYVGMGVEAVRCVLKQIEGGAAPEAAGKIWLPAVLR 341 + P L+ V G +A +L I G + P ++R Sbjct: 289 LAAFATPPLTTVRTEPFKEGNDAAATLLGLIAGNPVDGLHSRGLAPLIVR 338 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,215,851,884 Number of extensions: 94879266 Number of successful extensions: 245064 Number of sequences better than 1.0e-05: 4821 Number of HSP's gapped: 243429 Number of HSP's successfully gapped: 4821 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)