BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0013.p (262 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B7P4.1 Q2B7P4_9BACI Putative uncharacterized protein 241 4e-62 C2H7Q9.1 C2H7Q9_ENTFC Sugar isomerase 232 2e-59 Q3Y3G1.1 Q3Y3G1_ENTFC AP endonuclease, family 2 231 7e-59 B7AST5.1 B7AST5_9BACE Putative uncharacterized protein 173 1e-41 A6LQK8.1 A6LQK8_CLOB8 Xylose isomerase domain protein TIM barrel 171 5e-41 >Q2B7P4.1 Q2B7P4_9BACI Putative uncharacterized protein Length = 286 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 120/258 (46%), Positives = 168/258 (65%), Gaps = 2/258 (0%) Query: 1 LPELTAKLSRYRFSHIQLAVHKSFPESVPALTALSPGTAAYFGEAFRQAGVRIAVLGCYV 60 L EL ++ R FS IQLA+ KS P P+ LSPG + Y G+ F AGV+IAVLGCYV Sbjct: 15 LEELAEEIGRKGFSCIQLALGKSLPALYPSPGTLSPGLSRYIGKTFGDAGVQIAVLGCYV 74 Query: 61 NIADPDPAKRQLALNAFSTHLRLARDFGASLVGTETGSV--GNGYTPENFTXXXXXXXXX 118 N+ PD ++R+ L F H+R ARDFG S+VGTETGSV GY+ NF Sbjct: 75 NLIHPDLSERRKGLEKFKEHIRYARDFGCSIVGTETGSVLPEMGYSERNFEEKPFLDAVE 134 Query: 119 XXXXXXXXXXRFGVTVGIEAGINHPLYTAQLAHRLLTLIPSNNLQIILDCANLMTGDNYR 178 RFGV VG+EAG+NHP+++A RLL L+ SNN+Q+I D ANL+T +NY Sbjct: 135 SVAELALEAERFGVIVGVEAGVNHPVHSADRLKRLLDLVDSNNVQVIFDPANLITVENYH 194 Query: 179 QQDAVIGEALELLGDRIAVLHLKDFTVNDGQIGIVPVGQGLLHFAPLLQYMKYKRPHIQG 238 +QD ++ EA+ELLG++IA+ H KDF V + Q+ IVP GQGLL+++ + + +K ++P+IQ Sbjct: 195 RQDELLAEAIELLGEKIAIFHAKDFVVEEDQVKIVPAGQGLLNYSLISKLLKDRKPYIQV 254 Query: 239 ILESTPEDYMQSSIDFLQ 256 ++E T E ++ D+L+ Sbjct: 255 LMEGTKEPDIEGCADYLR 272 >C2H7Q9.1 C2H7Q9_ENTFC Sugar isomerase Length = 288 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 115/260 (44%), Positives = 162/260 (62%), Gaps = 1/260 (0%) Query: 3 ELTAKLSRYRFSHIQLAVHKSFPESVPALTALSPGTAAYFGEAFRQAGVRIAVLGCYVNI 62 E+ K+S+ SHIQ A K+FPE + L A++ G+AAYFGE F++ + +++LGCY+N+ Sbjct: 30 EIVQKVSQLHLSHIQFAPQKAFPEQLK-LNAMTLGSAAYFGEYFQKNNIELSILGCYINL 88 Query: 63 ADPDPAKRQLALNAFSTHLRLARDFGASLVGTETGSVGNGYTPENFTXXXXXXXXXXXXX 122 + + R AL F + L + A ++ TETGSV GYT ENFT Sbjct: 89 SSKNQEVRAQALATFKQQIALCSAYQAKMIATETGSVSVGYTKENFTEEAYQIARNSVIE 148 Query: 123 XXXXXXRFGVTVGIEAGINHPLYTAQLAHRLLTLIPSNNLQIILDCANLMTGDNYRQQDA 182 FGVTV +EAGINHP+Y QLA RL+ + S NL+IILDCANLM +N+ Q+ Sbjct: 149 LVAHAENFGVTVAVEAGINHPIYNYQLAKRLVDEVASPNLKIILDCANLMHKENHTDQEK 208 Query: 183 VIGEALELLGDRIAVLHLKDFTVNDGQIGIVPVGQGLLHFAPLLQYMKYKRPHIQGILES 242 VI AL+ L I LHLKD+ + +G+I +VPVG+G L F P+L Y+KY+RP + LE+ Sbjct: 209 VIQGALDNLQGCITALHLKDYIMENGKIRMVPVGKGCLDFRPVLHYIKYERPLMYATLEA 268 Query: 243 TPEDYMQSSIDFLQRLYDEV 262 TPE Y+ +I+ LQ +Y + Sbjct: 269 TPEIYVPEAIEHLQFIYQDC 288 >Q3Y3G1.1 Q3Y3G1_ENTFC AP endonuclease, family 2 Length = 278 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 115/260 (44%), Positives = 162/260 (62%), Gaps = 1/260 (0%) Query: 3 ELTAKLSRYRFSHIQLAVHKSFPESVPALTALSPGTAAYFGEAFRQAGVRIAVLGCYVNI 62 E+ K+S+ SHIQ A K+FPE + LT ++ G+AAYFGE F++ + +++LGCY+N+ Sbjct: 20 EIVQKVSQLHLSHIQFAPQKAFPEQLK-LTDMTLGSAAYFGEYFQKNNIELSILGCYINL 78 Query: 63 ADPDPAKRQLALNAFSTHLRLARDFGASLVGTETGSVGNGYTPENFTXXXXXXXXXXXXX 122 + + R AL F + L + A ++ TETGSV GYT ENFT Sbjct: 79 SSKNQEVRAQALATFKQQIALCSAYQAKMIATETGSVSVGYTKENFTEEAYQIARNSIIE 138 Query: 123 XXXXXXRFGVTVGIEAGINHPLYTAQLAHRLLTLIPSNNLQIILDCANLMTGDNYRQQDA 182 FGVTV +EAGINHP+Y QLA RL+ + S NL+IILDCANLM +N+ Q+ Sbjct: 139 LVAHAENFGVTVAVEAGINHPIYNYQLAKRLIDEVASPNLKIILDCANLMHKENHADQEK 198 Query: 183 VIGEALELLGDRIAVLHLKDFTVNDGQIGIVPVGQGLLHFAPLLQYMKYKRPHIQGILES 242 VI AL+ L I LHLKD+ + +G+I +VPVG+G L F P+L Y+KY+RP + LE+ Sbjct: 199 VIRGALDNLHGYITALHLKDYIMENGKIRMVPVGKGCLDFRPVLHYIKYERPLMYATLEA 258 Query: 243 TPEDYMQSSIDFLQRLYDEV 262 TPE Y+ +I+ LQ +Y + Sbjct: 259 TPEIYVPEAIEHLQFIYQDC 278 >B7AST5.1 B7AST5_9BACE Putative uncharacterized protein Length = 278 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 143/264 (54%), Gaps = 2/264 (0%) Query: 1 LPELTAKLSRYRFSHIQLAVHKSFPESVPALTALSPGTAAYFGEAFRQAGVRIAVLGCYV 60 L EL + F + +A++KS E PAL ++PG A Y E R+ V +AVLGCY Sbjct: 15 LAELIPNIHNQGFHCMHIALNKSIKEFNPALETMTPGLACYIRELCRKNDVDVAVLGCYK 74 Query: 61 NIADPDPAKRQLALNAFSTHLRLARDFGASLVGTETGSVGN--GYTPENFTXXXXXXXXX 118 N+ +PD + + + TH+R A G +VGTETG+V Y P N + Sbjct: 75 NLCNPDSVQHAAIVEQYKTHIRFASVLGCGVVGTETGAVNTEYKYEPANHSEEALELFIQ 134 Query: 119 XXXXXXXXXXRFGVTVGIEAGINHPLYTAQLAHRLLTLIPSNNLQIILDCANLMTGDNYR 178 + GV IE H +Y + A ++L I S NLQII D NL++ DNY+ Sbjct: 135 NVRPIVEYAEKMGVIFAIEPVYKHIVYNVERARKVLDAINSPNLQIIFDPVNLLSIDNYK 194 Query: 179 QQDAVIGEALELLGDRIAVLHLKDFTVNDGQIGIVPVGQGLLHFAPLLQYMKYKRPHIQG 238 QQD +I +A +LLG IAV+H KD+ + +G++ + G G +++ LL+ +K +P++ Sbjct: 195 QQDEIIEQAFDLLGPDIAVVHAKDYVIENGELKSIAAGTGGMNYPLLLKKIKEHKPYVHV 254 Query: 239 ILESTPEDYMQSSIDFLQRLYDEV 262 LE+T ++ +F+++LY EV Sbjct: 255 TLENTVPSNAVATREFMEKLYAEV 278 >A6LQK8.1 A6LQK8_CLOB8 Xylose isomerase domain protein TIM barrel Length = 278 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 4/247 (1%) Query: 16 IQLAVHKSFPESVPALTALSPGTAAYFGEAFRQAGVRIAVLGCYVNIADPDPAKRQLALN 75 +Q K E ++PG A Y + V I++LGCY+N+A+PD + + +L+ Sbjct: 30 VQFVAKKIISEFEVTRGCMTPGMAQYINNTLNKYEVNISILGCYINLANPDDNELKESLD 89 Query: 76 AFSTHLRLARDFGASLVGTETGSVGNGY--TPENFTXXXXXXXXXXXXXXXXXXXRFGVT 133 F H+R A+ G ++VGTETG+ Y T +N T +FG+ Sbjct: 90 TFKEHIRFAKYLGCNVVGTETGAFNKEYIYTEKNNTEEAFLRSLNSIRILVKEAEKFGIV 149 Query: 134 VGIEAGINHPLYTAQLAHRLLTLIPSNNLQIILDCANLMTGDNYRQQDAVIGEALELLGD 193 VGIE H + T + R L + SNNLQ+I D N + NY +QD +I ++ EL GD Sbjct: 150 VGIEGVTKHIMNTPERLKRALDNVESNNLQVIFDPINFIDESNYDKQDEIIRKSFELFGD 209 Query: 194 RIAVLHLKDFTVNDGQIGIVPVGQGLLHFAPLLQYMKYKRPHIQGILEST-PEDYMQSSI 252 RI ++H KDF DG++ V +G+G ++ LL+ +K ++P+I ILE T PED + SSI Sbjct: 210 RIVIIHAKDFIYKDGKVQQVSIGKGQFNYPLLLKLIKERKPYIDIILEDTIPED-LDSSI 268 Query: 253 DFLQRLY 259 +++ +Y Sbjct: 269 KYIEEIY 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,496,410,692 Number of extensions: 59859911 Number of successful extensions: 134468 Number of sequences better than 1.0e-05: 54 Number of HSP's gapped: 134414 Number of HSP's successfully gapped: 54 Length of query: 262 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 129 Effective length of database: 1,807,701,208 Effective search space: 233193455832 Effective search space used: 233193455832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)