BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0002.p
         (156 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1C727.1 B1C727_9FIRM Putative uncharacterized protein                101   2e-20
B9YBJ6.1 B9YBJ6_9FIRM Putative uncharacterized protein                 69   1e-10

>B1C727.1 B1C727_9FIRM Putative uncharacterized protein
          Length = 154

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 96/148 (64%), Gaps = 4/148 (2%)

Query: 1   MPLITPGGKYIYGWLKVKEDRTLFLPDEPLEEYGIQRCSKLFIMSGSGTSGGFSVMSRGM 60
           MP +T  GKYI+GW  +KED TL +P   +EEY + +  K+FI SGS ++GGF V  +G+
Sbjct: 1   MPQVTKEGKYIFGWSVIKEDYTLNIPSMAMEEYEMVKEDKVFIFSGSKSTGGFCVTRKGL 60

Query: 61  LEVHKSYLLDVLKKDPVLFN-QTEEGYIYRTKQRIFSWVYLDERNVISFPENVMEAMGIS 119
           L+  K  L  +L  +P L N + +EG + + K R ++++ +++   I   +++++ + + 
Sbjct: 61  LKNSK--LRGILYDNPRLMNYELKEGELIKYKGRSYAYLNIND-GEIKISKDMIDKLDLK 117

Query: 120 IQDELLSIRSSNVAFVNILQGPIVDRAR 147
             D+LLSIRSS++AF   L+G +++RA+
Sbjct: 118 SGDKLLSIRSSDIAFTMGLKGQLIERAK 145


>B9YBJ6.1 B9YBJ6_9FIRM Putative uncharacterized protein
          Length = 154

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 4/149 (2%)

Query: 1   MPLITPGGKYIYGWLKVKEDRTLFLPDEPLEEYGIQRCSKLFIMSGSGTSGGFSVMSRGM 60
           MP   PGGK+ +G   V +D+ + LP   ++EY +   + + + +GS  +GGF V  +G+
Sbjct: 1   MPQCNPGGKFCFGISVVHQDQ-IQLPPLAVDEYRLGEEANVILSTGSRETGGFIVYRKGL 59

Query: 61  LEVHKSYLLDVLKKDPVLFN-QTEEGYIYRTKQRIFSWVYLDERNVISFPENVMEAMGIS 119
           L    S L  +L + P L   Q   G   R K R + WV +    ++     +++   + 
Sbjct: 60  LV--GSLLQPILDEHPKLAQFQLPAGTFVRHKGRQYCWVPVTPSGLLKLDPTMLKVFELQ 117

Query: 120 IQDELLSIRSSNVAFVNILQGPIVDRARK 148
             D L++IRSSN+AF    +G +++R  +
Sbjct: 118 DGDRLIAIRSSNLAFTMGARGRLIERVHQ 146


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 934,979,437
Number of extensions: 35883076
Number of successful extensions: 73932
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 73929
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 3,060,696,203
Length adjustment: 117
Effective length of query: 39
Effective length of database: 1,958,437,448
Effective search space: 76379060472
Effective search space used: 76379060472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)