BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0345.0040.p
         (171 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHI4.1 B3KHI4_9BACI Putative uncharacterized protein                 67   8e-10

>B3KHI4.1 B3KHI4_9BACI Putative uncharacterized protein
          Length = 666

 Score = 66.6 bits (161), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%)

Query: 1   VAESRSYLLRYNQNIAAQEAVELQLTQLEDRRRIAAGRLVHLRKAQEIRELWLKWSEAKL 60
           VA SR+Y+ RYN+ +++   +E +L  LE  R  A   L  LRKA +IR  WL+W EA +
Sbjct: 205 VAVSRAYVSRYNEVVSSILEIERRLKLLEQERARAGEDLSLLRKALDIRPAWLEWQEAGV 264

Query: 61  ELAELPVIASFPEDGASRWRTLEAEVQNAEGVVFRLQRQHRELAAELAKQPPDECLQAQG 120
           EL +L   + FP DG  R+  +  E +       R+++   +   +L   P ++ L+  G
Sbjct: 265 ELKDLMDSSHFPPDGMPRYEKMLEEERVLHAQSIRVEQAIEDAEDKLGALPVNDFLEQYG 324

Query: 121 PQLEALDRRRSSYE 134
            ++E L  +RS +E
Sbjct: 325 ERIEELSAKRSLHE 338


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 860,648,839
Number of extensions: 27750197
Number of successful extensions: 96127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 96132
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 45
Effective length of database: 1,873,648,313
Effective search space: 84314174085
Effective search space used: 84314174085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)