BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0030.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLC9.1 B3KLC9_9BACI Putative uncharacterized protein 310 1e-82 B1DL40.1 B1DL40_9BACL Putative uncharacterized protein 251 5e-65 Q2B2W3.1 Q2B2W3_9BACI Putative uncharacterized protein 193 1e-47 A3I560.1 A3I560_9BACI Putative uncharacterized protein 186 3e-45 B1HT54.1 B1HT54_LYSSC Hypothetical yitT protein 186 3e-45 >B3KLC9.1 B3KLC9_9BACI Putative uncharacterized protein Length = 273 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 151/257 (58%), Positives = 190/257 (73%) Query: 1 MIACGFNLFLIPHRLLSGGVSGLAMLVGYFTPFNISXXXXXXXXXXXVAGWFQLGRRFIV 60 +IA GFNLFLIPH LLSGGVSG+A+++GYFTP NIS + GWF+LG+RF+ Sbjct: 17 IIAAGFNLFLIPHHLLSGGVSGVALVIGYFTPLNISIMYFVLNIPILITGWFKLGKRFVG 76 Query: 61 MSILSVGATTWLMALIPTATVASDMLXXXXXXXXXXXXXXXXXXXXXXXXXXFDILGSII 120 +SILSV TT + LIP VA+DML FDI+GS++ Sbjct: 77 LSILSVIVTTLFLELIPVNHVATDMLLSSVFGGVLVGFGTGLSFRVGGSTGGFDIIGSLV 136 Query: 121 TRYRDFPIGNVLVGMNALVILAAAYFDNNWNLALASMVSIYVSGRVVDLIHISHIKVTVY 180 T+YRDFP+G+VLV +NA+VI+A AY + +WNLALASM SIYV+G++VD++HISHIKVTV+ Sbjct: 137 TKYRDFPVGSVLVTLNAIVIMAVAYLEQDWNLALASMASIYVAGKMVDMLHISHIKVTVF 196 Query: 181 IVTTRTDELLKQLLVLQRGVTKIKTEGAYSHIERDMLMTVTTRYELAELKRIIKNSDPQA 240 IVT RT+ LL++LL RG+TKIKT+GA+SH E+DMLMTVTTRYELAELK+II +DP+A Sbjct: 197 IVTNRTEALLEKLLKRPRGITKIKTQGAFSHKEKDMLMTVTTRYELAELKQIITETDPEA 256 Query: 241 FVNIVETVGVMGSFRKR 257 FVNIVET VMG FRK Sbjct: 257 FVNIVETTAVMGQFRKN 273 >B1DL40.1 B1DL40_9BACL Putative uncharacterized protein Length = 279 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 128/256 (50%), Positives = 172/256 (67%) Query: 1 MIACGFNLFLIPHRLLSGGVSGLAMLVGYFTPFNISXXXXXXXXXXXVAGWFQLGRRFIV 60 +IA FNLFLIPH+LLSGG+SG+AM++GY T NI V GWF +GRRFIV Sbjct: 21 LIAGAFNLFLIPHQLLSGGLSGVAMMIGYITGGNIGWLYLVLNVPVLVWGWFIVGRRFIV 80 Query: 61 MSILSVGATTWLMALIPTATVASDMLXXXXXXXXXXXXXXXXXXXXXXXXXXFDILGSII 120 S+ +V A+T + LIP +A D++ FDI+ SII Sbjct: 81 WSMYTVLASTLFLQLIPVTAIAKDLVLASVFGGIILGVGTGMTLRYGGSSGGFDIIASII 140 Query: 121 TRYRDFPIGNVLVGMNALVILAAAYFDNNWNLALASMVSIYVSGRVVDLIHISHIKVTVY 180 TR RD P+G+++ +N LVI A + +WNLAL S++SIY++G+VVD+IH+ HIKVT + Sbjct: 141 TRKRDLPVGSIIFTLNGLVIAALVLYTQDWNLALYSLLSIYIAGKVVDIIHVRHIKVTAF 200 Query: 181 IVTTRTDELLKQLLVLQRGVTKIKTEGAYSHIERDMLMTVTTRYELAELKRIIKNSDPQA 240 I+TT+T+E+L +LL RG+T IKT GAY+ E+DMLMTV TRYELAEL++ I + D +A Sbjct: 201 IITTKTEEMLTKLLNHPRGITIIKTRGAYTSAEQDMLMTVRTRYELAELRKTIASIDNRA 260 Query: 241 FVNIVETVGVMGSFRK 256 FVNIVETVGV+G FR+ Sbjct: 261 FVNIVETVGVIGDFRR 276 >Q2B2W3.1 Q2B2W3_9BACI Putative uncharacterized protein Length = 269 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/257 (40%), Positives = 154/257 (59%), Gaps = 2/257 (0%) Query: 1 MIACGFNLFLIPHRLLSGGVSGLAMLVGYFTPFNISXXXXXXXXXXXVAGWFQLGRRFIV 60 ++ +NLFLIPH +LS G+SG+A+++G TPFN + G +LG+RFI Sbjct: 13 IVGFAYNLFLIPHEILSSGLSGVAIMLGIITPFNTGLLNFLLNLPLLILGVIKLGKRFIF 72 Query: 61 MSILSVGATTWLMALIPTATVASDMLXXXXXXXXXXXXXXXXXXXXXXXXXXFDILGSII 120 +I+SV + + LIP ++S+ + FDI+ ++ Sbjct: 73 YTIVSVLTLSVSLYLIPVNAISSEPILSSVFGGVLTGAGIGLVFKASGSSGGFDIIAMLL 132 Query: 121 TRYRDFPIGNVLVGMNALVILAAAYFDNNWNLALASMVSIYVSGRVVDLIHISHIKVTVY 180 TR +DFP+G +L MNA+V+LA+ F +W+ AL +MV+IY +G+VVD IH HIK+TV Sbjct: 133 TRKKDFPLGAILSLMNAIVVLASG-FIFSWDAALNTMVAIYATGKVVDTIHTKHIKLTVM 191 Query: 181 IVTTRTDELLKQLLV-LQRGVTKIKTEGAYSHIERDMLMTVTTRYELAELKRIIKNSDPQ 239 IVT + +E+ +LL + RG+T I EG Y+ R +LMTV TRY+L E+K +I DPQ Sbjct: 192 IVTAKGEEMKAKLLSSIYRGITVINGEGGYTGEGRKILMTVITRYQLTEVKSMIDEVDPQ 251 Query: 240 AFVNIVETVGVMGSFRK 256 AFVNI ET V+GSF + Sbjct: 252 AFVNITETTEVLGSFHR 268 >A3I560.1 A3I560_9BACI Putative uncharacterized protein Length = 272 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/257 (39%), Positives = 154/257 (59%), Gaps = 2/257 (0%) Query: 1 MIACGFNLFLIPHRLLSGGVSGLAMLVGYFTPFNISXXXXXXXXXXXVAGWFQLGRRFIV 60 ++A +N LIPH +LSGG+SG+A+++G TP N + G +LG+RFI Sbjct: 13 LVAFAYNFLLIPHEILSGGLSGIAIMLGIITPLNTGVLNLLLNLPLLILGVMKLGKRFIS 72 Query: 61 MSILSVGATTWLMALIPTATVASDMLXXXXXXXXXXXXXXXXXXXXXXXXXXFDILGSII 120 +ILSV + + +IP + + FDI+ ++ Sbjct: 73 YTILSVAVLSVSLYIIPIYKATQEPILASLFGGVIVGVAMGLIFRAAGSSGGFDIIAMLL 132 Query: 121 TRYRDFPIGNVLVGMNALVILAAAYFDNNWNLALASMVSIYVSGRVVDLIHISHIKVTVY 180 +R RDFP+G ++ MN +V+ AA+ F +W+ AL ++VSIY +G+VVD IH SHIK+T+ Sbjct: 133 SRKRDFPLGTLIAAMNGIVV-AASGFVFSWDAALLTLVSIYATGKVVDTIHTSHIKLTLM 191 Query: 181 IVTTRTDELLKQLL-VLQRGVTKIKTEGAYSHIERDMLMTVTTRYELAELKRIIKNSDPQ 239 I+T + +E+ +QLL L RGVT I +GAYS R +L+TV TRY+LA++K IK +DP+ Sbjct: 192 IITNKGEEVKQQLLEKLHRGVTIIDAKGAYSGEGRQVLITVITRYQLADVKSTIKETDPK 251 Query: 240 AFVNIVETVGVMGSFRK 256 +FVNI++T VMG F + Sbjct: 252 SFVNILQTTEVMGMFDR 268 >B1HT54.1 B1HT54_LYSSC Hypothetical yitT protein Length = 272 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/257 (39%), Positives = 154/257 (59%), Gaps = 2/257 (0%) Query: 1 MIACGFNLFLIPHRLLSGGVSGLAMLVGYFTPFNISXXXXXXXXXXXVAGWFQLGRRFIV 60 ++A +N LIPH +LSGG+SG+A+++G TP N + G +LG+RFI Sbjct: 13 LVAFAYNFLLIPHEILSGGLSGIAIMLGIITPLNTGVLNLLLNLPLLILGVMKLGKRFIS 72 Query: 61 MSILSVGATTWLMALIPTATVASDMLXXXXXXXXXXXXXXXXXXXXXXXXXXFDILGSII 120 +ILSV + + +IP + + FDI+ ++ Sbjct: 73 YTILSVAVLSVSLYIIPIYKATQEPILASLFGGVIVGVAMGLIFRAAGSSGGFDIIAMLL 132 Query: 121 TRYRDFPIGNVLVGMNALVILAAAYFDNNWNLALASMVSIYVSGRVVDLIHISHIKVTVY 180 +R RDFP+G ++ MN +V+ AA+ F +W+ AL ++VSIY +G+VVD IH SHIK+T+ Sbjct: 133 SRKRDFPLGTLIAAMNGIVV-AASGFVFSWDAALLTLVSIYATGKVVDTIHTSHIKLTLM 191 Query: 181 IVTTRTDELLKQLL-VLQRGVTKIKTEGAYSHIERDMLMTVTTRYELAELKRIIKNSDPQ 239 I+T + +E+ +QLL L RGVT I +GAYS R +L+TV TRY+LA++K IK +DP+ Sbjct: 192 IITNKGEEVKQQLLEKLHRGVTIIDAKGAYSGEGRKVLITVITRYQLADVKSTIKETDPK 251 Query: 240 AFVNIVETVGVMGSFRK 256 +FVNI++T VMG F + Sbjct: 252 SFVNILQTTEVMGMFDR 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,167,516,284 Number of extensions: 36727183 Number of successful extensions: 124310 Number of sequences better than 1.0e-05: 1494 Number of HSP's gapped: 122187 Number of HSP's successfully gapped: 1494 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)