BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0029.p (555 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLD0.1 B3KLD0_9BACI DEAD/DEAH box helicase domain protein 810 0.0 B1DL39.1 B1DL39_9BACL DEAD/DEAH box helicase domain protein 771 0.0 A4J6U9.1 A4J6U9_DESRM DEAD/DEAH box helicase domain protein 587 e-166 C0Z8J1.1 C0Z8J1_BREBN Putative ATP-dependent RNA helicase 565 e-159 C0GIC6.1 C0GIC6_9FIRM DEAD/DEAH box helicase domain protein 561 e-158 >B3KLD0.1 B3KLD0_9BACI DEAD/DEAH box helicase domain protein Length = 533 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/458 (86%), Positives = 431/458 (94%), Gaps = 4/458 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 +K FA+FGLEP+VLQAITELGFEEATPIQ Q+IPIALTG D+IGQAQTGTGKTAAFG+PL Sbjct: 1 MKNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPL 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 I KIA+EEE+I+AL+MTPTRELAIQVAEEIGKL+RFKG+RSLAIYGGQDIGRQIR LK+K Sbjct: 61 IHKIAKEEERIVALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKRK 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 PQIIIGTPGRLLDHINRKTIRLDDVQT+VLDEADEMLDMGFMEDIQ+ILKLVPEERQT+L Sbjct: 121 PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMP NIQ+LA QFLK P+HVSVIPK +SAPLIDQAYIEVPERQKFEALSRL+DMESP Sbjct: 181 FSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLDMESP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 +LAIVFGRTKRRVDELAE LQKRGYSADGLHGDLSQ+QRD VMRKFRDGSIDVLVATDVA Sbjct: 241 ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLDVSGVTHV+NFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHL+ IERVTR Sbjct: 301 ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTR 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 HRI RKPLPT+AEAIEGKQRI AER+L ++E GEL EYKG+AIQLLEQYDSVQLL AAM Sbjct: 361 HRIPRKPLPTIAEAIEGKQRIIAERVLEIIE-QGELTEYKGLAIQLLEQYDSVQLLAAAM 419 Query: 424 KLLTGDTKDAQ-VELTPEDPIRVKRRGGKNDIRSGRKP 460 K+LTGD K+A + LTPEDPIR KRR K DIR+GRKP Sbjct: 420 KILTGDKKEASDIHLTPEDPIRAKRR--KPDIRNGRKP 455 >B1DL39.1 B1DL39_9BACL DEAD/DEAH box helicase domain protein Length = 535 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/454 (81%), Positives = 422/454 (92%), Gaps = 3/454 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 +KTFAEFGLEPKVLQAITELGFEE+TPIQ+++IPIA+ GSD+IGQAQTGTGKTAAFGIPL Sbjct: 1 MKTFAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPL 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 I+KI+ EE+I+AL+MTPTRELAIQVA+EIGKLT++KGLRSL IYGGQ+IGRQIR LKKK Sbjct: 61 INKISINEERIVALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRALKKK 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 PQIIIGTPGRLLDHINRKTI+L+DVQT+VLDEADEMLDMGFMEDIQ+ILK VPEERQT+L Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPEERQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMPPNIQ+LAQQFLKNP+HV+VI KQ++AP I Q Y EV ERQKFEAL RL+DMESP Sbjct: 181 FSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCRLLDMESP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 +LAI+FGRTKRRVDEL+EGLQKRGY+ADGLHGDLSQNQRD VMRKFRDGSIDVLVATDVA Sbjct: 241 ELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEG+A+SFVTPRE+DHLH IE+VTR Sbjct: 301 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLHFIEKVTR 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 RI++KPLP++AEAIEGKQR+TAER+L +V+ + EYKGIAIQLLEQYDSV L+ AA+ Sbjct: 361 QRISKKPLPSLAEAIEGKQRLTAERVLEIVQ-TEDFTEYKGIAIQLLEQYDSVHLMAAAL 419 Query: 424 KLLTGDTKDAQVELTPEDPIRVKRRGGKNDIRSG 457 KLLTG+ KD VELTPE+P+R K+R K DIRS Sbjct: 420 KLLTGEKKDVSVELTPEEPLRAKKR--KPDIRSN 451 >A4J6U9.1 A4J6U9_DESRM DEAD/DEAH box helicase domain protein Length = 482 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 274/444 (61%), Positives = 367/444 (82%), Gaps = 1/444 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 + +F E GL V ++I +GFEEATPIQE+AIPIAL+G DLIGQA TGTGKTAAFGIP+ Sbjct: 1 MSSFYELGLSKSVSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPM 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 + + +R+++ I L++TPTRELA+QVAEE+ ++ + KG+ +L +YGGQDI RQIR LKKK Sbjct: 61 VERFSRQQDTIQGLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKKK 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 P II+GTPGRL+DH+ RKTIRL+++ +VLDEADEML+MGF+EDI+ IL+ VPEERQT+L Sbjct: 121 PHIIVGTPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSAT+ IQ LA++FLKNP+ +++ K+++ P IDQ+Y+EV E+QKFE LS +D++SP Sbjct: 181 FSATISKPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEVQEKQKFEVLSTFLDIQSP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 DLAIVFGRTKRRVDEL E L KRGYSA+G+HGDL+Q++R++V+R+F++G I+VLVATDVA Sbjct: 241 DLAIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLD+SGVTHV NFD+PQDPESYVHRIGRTGRAGK+G A +FVTPREM+HL LIER+T+ Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLIERITK 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 H+I+R+P+PT+ E IEG+QR+ E+LL +VE GG Y+ +A LL + D+ L+ AA+ Sbjct: 361 HKISRRPIPTIKEVIEGQQRLAVEKLLKVVEEGG-FEHYRRLAEDLLIEQDAATLVAAAL 419 Query: 424 KLLTGDTKDAQVELTPEDPIRVKR 447 +++T + V+LT E P+R K+ Sbjct: 420 RMITKEPDRTPVQLTEERPLRSKK 443 >C0Z8J1.1 C0Z8J1_BREBN Putative ATP-dependent RNA helicase Length = 513 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 271/442 (61%), Positives = 352/442 (79%), Gaps = 1/442 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 + TF +FGL +++A++ +GFEEAT IQ+Q +P+AL G DLIGQAQTGTGKTAAFGIPL Sbjct: 1 MATFNDFGLHHSIVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPL 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 I ++ I +V+TPTRELA+QVAEEI K+ +FK + +L IYGGQDI RQI+ LKK+ Sbjct: 61 IERMDETSGNIQGVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKKR 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 PQII+ TPGR +DH+ R+TIRLD ++ +VLDEADEML+MGF++DI+ ILK VPE RQT+L Sbjct: 121 PQIIVATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMP IQ +AQQF+ P + V K+++ P I Q Y+EV E+QKF+ L RL+D+ SP Sbjct: 181 FSATMPRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQEYMEVAEKQKFDVLCRLLDIHSP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 +LAI+FGRTKRRVDEL+E L KRGY A+G+HGDL+Q +RD+V+RKF++G+I+VLVATDVA Sbjct: 241 ELAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLD+SGVTHV NFD+PQD ESYVHRIGRTGRAGK G A +FVT RE+DHL LIER T Sbjct: 301 ARGLDISGVTHVFNFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREIDHLRLIERTTN 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 R+ R+ +P+MAEA+EG+Q++T +++L G +L+ YK +A QLLE DSV L++AA+ Sbjct: 361 RRMERRAVPSMAEALEGQQKMTVDKILE-ASGRDDLSAYKTLAEQLLEDVDSVTLVSAAL 419 Query: 424 KLLTGDTKDAQVELTPEDPIRV 445 KLLT + V LT E P+RV Sbjct: 420 KLLTKEPDMTPVRLTEEAPLRV 441 >C0GIC6.1 C0GIC6_9FIRM DEAD/DEAH box helicase domain protein Length = 470 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 270/445 (60%), Positives = 354/445 (79%), Gaps = 1/445 (0%) Query: 4 LKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL 63 + F +F + VLQA++ +GFEEATPIQEQAIP AL G DLIGQA TGTGKTAAFG+P+ Sbjct: 1 MTKFNDFAVSENVLQAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPM 60 Query: 64 ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK 123 + K+ + + ALV+TPTRELA+QVAEE+ K+ ++KG+R+L +YGGQDIGRQIRGL+K+ Sbjct: 61 VEKLEKNGSTVQALVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQKR 120 Query: 124 PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML 183 PQII+GTPGRLLDHI R+T+RL V +VLDEADEML+MGF+EDI+ IL+ P+ERQT+L Sbjct: 121 PQIIVGTPGRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTLL 180 Query: 184 FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP 243 FSATMP I++LA++F+++PQ +SV K+++ P +Q ++ + ERQKF+ L RL+D +SP Sbjct: 181 FSATMPGPIEQLARRFMRDPQKISVRSKEVTVPNTEQFHMVMEERQKFDVLCRLLDTQSP 240 Query: 244 DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA 303 DLAIVFGRTKRRVDEL E L KRGYSA+G+HGD++Q +RD+VMR+F+DGSID+LVATDVA Sbjct: 241 DLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVATDVA 300 Query: 304 ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR 363 ARGLD++GVTHV NFD+PQDPESYVHRIGRTGRAG G A +FV+ RE+ HL IE T+ Sbjct: 301 ARGLDITGVTHVYNFDIPQDPESYVHRIGRTGRAGNTGMAVTFVSNREVGHLRTIEYGTK 360 Query: 364 HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM 423 RI R PT+ EAIEG+QRI E+LL VE ++ Y+ +A +LL ++D+ +L AA+ Sbjct: 361 SRIPRLSTPTVKEAIEGQQRIAVEKLLKTVE-SEDITHYQPLADELLNEHDAETILAAAL 419 Query: 424 KLLTGDTKDAQVELTPEDPIRVKRR 448 K+LT + V+LT E P KR+ Sbjct: 420 KMLTKEPDTTPVKLTEEAPQWSKRQ 444 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,851,765,604 Number of extensions: 113220532 Number of successful extensions: 397760 Number of sequences better than 1.0e-05: 12313 Number of HSP's gapped: 375263 Number of HSP's successfully gapped: 13003 Length of query: 555 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 414 Effective length of database: 1,732,333,088 Effective search space: 717185898432 Effective search space used: 717185898432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)