BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0028.p (265 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLD2.1 B3KLD2_9BACI Putative uncharacterized protein 284 5e-75 B1DL38.1 B1DL38_9BACL Putative uncharacterized protein 199 3e-49 Q8ENC5.1 Q8ENC5_OCEIH Hypothetical conserved protein 106 2e-21 Q9KBL9.1 Q9KBL9_BACHD BH1907 protein 80 2e-13 O34378.1 O34378_BACSU YteU 80 2e-13 >B3KLD2.1 B3KLD2_9BACI Putative uncharacterized protein Length = 287 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 137/221 (61%), Positives = 170/221 (76%) Query: 1 MGGLYRITEWISRIAFSNILWALCSIPFLFIAVTKMIMLGSGAGGPNEQITLNWVLGILA 60 MGGLY++TEWI+RIAFSNILW +C+ PFLFI +TK +M NEQ+ NW+LGIL+ Sbjct: 27 MGGLYKLTEWITRIAFSNILWVICTSPFLFIVLTKFLMAVQTPEAHNEQLLSNWILGILS 86 Query: 61 PFTVFPATAALFTVVRKWVMGNTDVSTFRTFFQGYKENYLKSMLGGGIYTLLTVIMYVDV 120 PF +FPATAALFTVVRKWVMGN DVS F+TFF+GYKENY +SM+GG YTLL VIMYVD Sbjct: 87 PFVLFPATAALFTVVRKWVMGNPDVSVFKTFFKGYKENYKQSMIGGIFYTLLFVIMYVDY 146 Query: 121 TVYMTQMANFKXXXXXXXXXXXXXFVSMFNFFSIVVHYQMTFKEVVKNSILLTIARPIRV 180 TVYMTQ+ F+ FVS+FNFFS+ VHY+M +++KN++LLT+ RP RV Sbjct: 147 TVYMTQLDGFQLVGIVMLVLLIVLFVSLFNFFSMTVHYEMKTTQLLKNAVLLTLIRPFRV 206 Query: 181 FSTLIGAAVLVYIGLRYPVLYVICIPTLIAMLAFFNFYATY 221 FSTLIG+AVL YIG + PVL+V + L+A+ AFFNFYAT+ Sbjct: 207 FSTLIGSAVLAYIGTQMPVLFVFFLFCLMALFAFFNFYATF 247 >B1DL38.1 B1DL38_9BACL Putative uncharacterized protein Length = 261 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 107/226 (47%), Positives = 147/226 (65%), Gaps = 10/226 (4%) Query: 2 GGLYRITEWISRIAFSNILWALCSIPFLFIAVTKMIMLGSGAGGPNEQITLN-----WVL 56 GGLYRI+EWI R+A NILW +CSIPF+FIA + + L + A + IT ++ Sbjct: 8 GGLYRISEWIMRLAVINILWLVCSIPFVFIAWSGL--LAAPANTSDSAITSQVYATLIMM 65 Query: 57 GILAPFTVFPATAALFTVVRKWVMGNTDVSTFRTFFQGYKENYLKSMLGGGIYTLLTVIM 116 ++APFT+FPATAA+FT+ RKWVMG DV F+TFF+GYKENYL+SM+GG Y+L+ IM Sbjct: 66 AVIAPFTLFPATAAMFTIARKWVMGEVDVPMFKTFFRGYKENYLQSMIGGIFYSLILGIM 125 Query: 117 YVDVTVYMTQMANFKXXXXXXXXXXXXXFVSMFNFFSIVVHYQMTFKEVVKNSILLTIAR 176 +D VY + F VS+FNFFS++VHY M +++KN+IL+TI R Sbjct: 126 IIDFVVYQDK---FNLFSYLYLAICLLLVVSLFNFFSMLVHYHMKTFQLLKNAILITIGR 182 Query: 177 PIRVFSTLIGAAVLVYIGLRYPVLYVICIPTLIAMLAFFNFYATYN 222 PIR FST I AA ++Y +Y L + ++IA L+F+NF+ Y Sbjct: 183 PIRSFSTAIMAAAVMYFSTQYTFLIPFFMGSVIAYLSFWNFHLIYR 228 >Q8ENC5.1 Q8ENC5_OCEIH Hypothetical conserved protein Length = 228 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 9/222 (4%) Query: 1 MGGLYRITEWISRIAFSNILWALCSIPFLFIAVTKMIMLGSGAGGPNEQITLNWVLGILA 60 MG +Y I EWI R + +N+LW L +IP +FI ++ + M + I L L + Sbjct: 7 MGNIYTICEWIMRFSVTNLLWVLFNIPLIFIGLSILFM-----NSIQDAIILIPFLLLCF 61 Query: 61 PFTVFPATAALFTVVRKWVMGNTDVSTFRTFFQGYKENYLKSMLGGGIYTLLTVIMYVDV 120 PF +FPAT+A+F +VR W++ S +++ Y++NY +SM G I+ L+ ++ VD Sbjct: 62 PFCLFPATSAMFALVRDWIIDQEKSSIIGSYWIYYRDNYKQSMQAGWIFGLIWIVWAVD- 120 Query: 121 TVYMTQMANFKXXXXXXXXXXXXXFVSMFNFFSIVVHYQMTFKEVVKNSILLTIARPIRV 180 Y Q N +V FFS++VHY + +K ++K + +LT+ P Sbjct: 121 -YYYFQKEN-TVLMFAFLIMGLILYVFTLLFFSVIVHYDLGWKTLLKKAFILTVGSPALF 178 Query: 181 FSTLIGAAVLVYIGLR-YPVLYVICIPTLIAMLAFFNFYATY 221 FS +I +++ + ++ P++ +LIA + F FY + Sbjct: 179 FSIMIVTGIILLVSIQTLPIIIPFFTGSLIAFITFSAFYRLF 220 >Q9KBL9.1 Q9KBL9_BACHD BH1907 protein Length = 236 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 12/218 (5%) Query: 3 GLYRITEWISRIAFSNILWALCSIPFLFIAVTKMIMLGSGAGGPNEQITLNWVLGILAPF 62 GLY+++ +I+R A++N++W + P +++ + ++ + A N + + L PF Sbjct: 7 GLYKLSTFITRFAYTNLIWIFFNAPVVYLLLHLIV---TDAKNMNHLLAIT---ACLLPF 60 Query: 63 TVFPATAALFTVVRKWVMGNTDVSTFRTFFQGYKENYLKSMLGGGIYTLLTVIMYVDVTV 122 FPAT AL+ VVR+W++ D TF+ YKENY KS+ GG + VI + V Sbjct: 61 VFFPATTALYGVVRRWIIKENDSGLLITFWSLYKENYRKSVTGG----VFLVIFWGAWLV 116 Query: 123 YMTQMAN--FKXXXXXXXXXXXXXFVSMFNFFSIVVHYQMTFKEVVKNSILLTIARPIRV 180 Q+ F FFS +VH++ + N+++L ++ PI Sbjct: 117 NYVQLIQSLFGLILIVYLLLTGLFITWTAYFFSYIVHFERGVIAALTNALMLAVSHPIST 176 Query: 181 FSTLIGAAVLVYIGLRYPVLYVICIPTLIAMLAFFNFY 218 + L Y+ L L +L+A FF FY Sbjct: 177 AAVAGLHMALFYLSLGQLYLIASVGGSLVAYCGFFYFY 214 >O34378.1 O34378_BACSU YteU Length = 222 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 42/181 (23%) Query: 1 MGGLYRITEWISRIAFSNILWALCSIPFLFIAVTKMIMLGSGAGGPNEQITLNWVLGILA 60 +G + R EWI R A++N+LW + +LG G Sbjct: 7 LGRMLRFCEWIMRFAYTNLLWLFFT------------LLGLGV----------------- 37 Query: 61 PFTVFPATAALFTVVRKWVMGNTDVSTFRTFFQGYKENYLKSMLGGGIYTLLTVIMYVDV 120 F + PATAALF V+RKW+ G +V +TF+Q YK + +S L G + L+ VI+Y+D+ Sbjct: 38 -FGIMPATAALFAVMRKWIQGQDNVPVLKTFWQEYKGEFFRSNLLGAVLALIGVIIYIDL 96 Query: 121 TV-----YMTQMANFKXXXXXXXXXXXXXFVSM-FNFFSIVVHYQMTFKEVVKNSILLTI 174 + ++ + F FVSM F F ++VH+ + VK S+LL++ Sbjct: 97 ALIYPSHFLLHILRFA------IMIFGFLFVSMLFYVFPLLVHFDWKKRLYVKFSLLLSV 150 Query: 175 A 175 A Sbjct: 151 A 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,216,425,559 Number of extensions: 45373943 Number of successful extensions: 128753 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 128719 Number of HSP's successfully gapped: 41 Length of query: 265 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 132 Effective length of database: 1,807,701,208 Effective search space: 238616559456 Effective search space used: 238616559456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 130 (54.7 bits)