BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0345.0027.p
         (127 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLD3.1 B3KLD3_9BACI Putative uncharacterized protein                212   1e-53
B1DL37.1 B1DL37_9BACL Putative uncharacterized protein                180   4e-44
A6CR65.1 A6CR65_9BACI Putative uncharacterized protein                 60   9e-08
Q5KWC7.1 Q5KWC7_GEOKA Hypothetical conserved protein                   55   3e-06

>B3KLD3.1 B3KLD3_9BACI Putative uncharacterized protein
          Length = 130

 Score =  212 bits (539), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/127 (82%), Positives = 114/127 (89%)

Query: 1   LKRTLVGLFRSHDGTSDRAKDPALKTRYYNLSRDKAWDEVSSTLKKIPGYKVLHEVESVG 60
           LKR L+G+ RS+DGTSDRAKDP LKTRYYNLS++K ++EVSSTLKKIPGYKVLHEV+SVG
Sbjct: 3   LKRVLIGIVRSYDGTSDRAKDPKLKTRYYNLSKEKCFEEVSSTLKKIPGYKVLHEVKSVG 62

Query: 61  EITLEKRTGFGRTLDITVSVLNTSPVRCAVDIYSASRGSLGDLGANYRVIQRLYQSLDKK 120
           EITLEKRT FGRTLDITVSVL  SPVR AVD+YSASRGSLGDLGANYRVI  LY  LDKK
Sbjct: 63  EITLEKRTSFGRTLDITVSVLGISPVRSAVDMYSASRGSLGDLGANYRVILNLYAVLDKK 122

Query: 121 LGKYKVD 127
           L KYKVD
Sbjct: 123 LSKYKVD 129


>B1DL37.1 B1DL37_9BACL Putative uncharacterized protein
          Length = 127

 Score =  180 bits (456), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 106/125 (84%)

Query: 1   LKRTLVGLFRSHDGTSDRAKDPALKTRYYNLSRDKAWDEVSSTLKKIPGYKVLHEVESVG 60
           LKRTL+GL RSH+ T D+AKDP LK+  Y LS++KAW+EV STLKK+ GYK+LHEV+SVG
Sbjct: 2   LKRTLIGLLRSHEATGDKAKDPLLKSHIYKLSKEKAWEEVVSTLKKMQGYKLLHEVKSVG 61

Query: 61  EITLEKRTGFGRTLDITVSVLNTSPVRCAVDIYSASRGSLGDLGANYRVIQRLYQSLDKK 120
           EI +EKRT  GRT+DITV+V++ +PV  AVDIYSAS+GSLGDLG+NYRVI  +Y++LDKK
Sbjct: 62  EIVMEKRTMTGRTMDITVTVISVNPVTSAVDIYSASKGSLGDLGSNYRVILDIYRTLDKK 121

Query: 121 LGKYK 125
           L  +K
Sbjct: 122 LAAFK 126


>A6CR65.1 A6CR65_9BACI Putative uncharacterized protein
          Length = 124

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 4   TLVGLFRSHDGTSDRAKDPALKTRYYNLSRDKAWDEVSSTLKKIPGYKVLHEVESVGEIT 63
           +++ +F+S   TSD   D  LKTRYY  ++DK +  V         Y+V+ E    GEIT
Sbjct: 6   SIITIFKSDIETSDSNPDKELKTRYYKSAQDKVFQAVLDLFSS-SDYRVISESRERGEIT 64

Query: 64  LEKRTGFGRTLDITVSVLNTSPVRCAVDI-YSASRGSLGDLGANYRVIQRLYQSLDKKLG 122
           +EK +GF     I V+ +N +P   AVD   SA +   G      + I   YQ LD +L 
Sbjct: 65  VEK-SGFPGYF-IVVTAINVAPFESAVDFKISADKKIPGSYAKMRQKITSYYQVLDSRLK 122

Query: 123 K 123
           +
Sbjct: 123 R 123


>Q5KWC7.1 Q5KWC7_GEOKA Hypothetical conserved protein
          Length = 132

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 3   RTLVGLFRSHDGTSDRAKDPALKTRYYNLSRDKAWDEVSSTLKKIPGYKVLHEVESVGEI 62
           +TL   F +H  T +  +D  L++ YY  +     D V   L  +PG +++   E  GEI
Sbjct: 5   KTLKYAFTNHCETRENHEDEELRSHYYKATNRAVIDAVKELLSSLPGAELVSVSEERGEI 64

Query: 63  TLEKRTGFGRTLDITVSVLNTSPVRCAVDIYSASRGSL--GDLGANYRVIQRLYQSLDKK 120
             + R   G+ L I  +V++  P   AVD  + +   L   D G +  VI  LY+ LD +
Sbjct: 65  CAQTRR--GKKLFIVATVISVRPFETAVDFSATTETKLLPFDFGHSRAVILDLYRKLDAR 122

Query: 121 L 121
           L
Sbjct: 123 L 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 740,769,460
Number of extensions: 27747001
Number of successful extensions: 66439
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 66447
Number of HSP's successfully gapped: 5
Length of query: 127
Length of database: 3,060,696,203
Length adjustment: 92
Effective length of query: 35
Effective length of database: 2,193,962,823
Effective search space: 76788698805
Effective search space used: 76788698805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)