BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0026.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLD4.1 B3KLD4_9BACI Redoxin domain protein 302 7e-81 B1DL36.1 B1DL36_9BACL Redoxin domain protein 266 4e-70 B1DF73.1 B1DF73_9BACL Redoxin domain protein 264 3e-69 A3I931.1 A3I931_9BACI Thiol peroxidase (Superoxide-inducible pro... 228 2e-58 C4FQY0.1 C4FQY0_9FIRM Putative uncharacterized protein 227 3e-58 >B3KLD4.1 B3KLD4_9BACI Redoxin domain protein Length = 172 Score = 302 bits (774), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 144/171 (84%), Positives = 153/171 (89%) Query: 1 MTQERTGAATFKGNPITLVGPELKAGDTAPGFVVSKNLLEDASLSDYAGKIKLISVVPSL 60 M QER+GAATFKGNPITL+GP+LKAGD AP F VSKNLLED SL DYAGKIKLISVVPSL Sbjct: 1 MAQERSGAATFKGNPITLIGPQLKAGDAAPDFTVSKNLLEDVSLKDYAGKIKLISVVPSL 60 Query: 61 DTGVCDAQTRRFNTEAAELGDDVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFG 120 DTGVCDAQTRRFN EAA LGDDVVILTIS DLPFAQARWCGAAG+DRVITLSD+K SFG Sbjct: 61 DTGVCDAQTRRFNEEAAGLGDDVVILTISADLPFAQARWCGAAGVDRVITLSDYKSRSFG 120 Query: 121 LAYGVLIKEFRLDMRSIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVKEL 171 AYGVLIKEF+LDMRSIFV+D NDT+ YVEYL EM EHPNYEAA+ AVK L Sbjct: 121 EAYGVLIKEFQLDMRSIFVVDANDTITYVEYLGEMTEHPNYEAAIDAVKSL 171 >B1DL36.1 B1DL36_9BACL Redoxin domain protein Length = 172 Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 120/172 (69%), Positives = 143/172 (83%) Query: 1 MTQERTGAATFKGNPITLVGPELKAGDTAPGFVVSKNLLEDASLSDYAGKIKLISVVPSL 60 M+QER A FKGNPITL+GPE+K GD AP F ++K+L++ SL D+AGK+KLISVVPS+ Sbjct: 1 MSQERANVAAFKGNPITLIGPEVKVGDQAPDFTINKSLVDSVSLKDFAGKVKLISVVPSI 60 Query: 61 DTGVCDAQTRRFNTEAAELGDDVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFG 120 DTGVCDAQTRRFN EAA LGD+V++LT+S+D PFAQ+RWCGAAG+D+V+ LSD K FG Sbjct: 61 DTGVCDAQTRRFNEEAASLGDNVIVLTVSVDTPFAQSRWCGAAGVDKVVMLSDFKSHDFG 120 Query: 121 LAYGVLIKEFRLDMRSIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVKELL 172 AYGV IKEF LDMRSIFVID ND V YVEYL+EM EHPNYE A+ AVK L+ Sbjct: 121 QAYGVYIKEFGLDMRSIFVIDANDKVQYVEYLSEMTEHPNYEQAINAVKALV 172 >B1DF73.1 B1DF73_9BACL Redoxin domain protein Length = 173 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 120/171 (70%), Positives = 147/171 (85%) Query: 1 MTQERTGAATFKGNPITLVGPELKAGDTAPGFVVSKNLLEDASLSDYAGKIKLISVVPSL 60 MTQERTG AT G PITL+GPELK GD AP F ++K+L+ +ASLSDYAG+IKLISVVPSL Sbjct: 1 MTQERTGKATVGGQPITLIGPELKIGDKAPAFTINKDLMTEASLSDYAGQIKLISVVPSL 60 Query: 61 DTGVCDAQTRRFNTEAAELGDDVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFG 120 DT VCDAQTRRFN EA++LGD+VV+LTIS+DLPFAQ+R+C AGI+RVITLSD+K SFG Sbjct: 61 DTDVCDAQTRRFNQEASKLGDNVVVLTISVDLPFAQSRFCATAGIERVITLSDYKHRSFG 120 Query: 121 LAYGVLIKEFRLDMRSIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVKEL 171 AYGVLIKE +LD R+IF++D ND + Y EYL EM++HPNY+AA+ A++EL Sbjct: 121 AAYGVLIKELQLDQRAIFIVDANDIIRYAEYLGEMSDHPNYDAALTALREL 171 >A3I931.1 A3I931_9BACI Thiol peroxidase (Superoxide-inducible protein 8) Length = 167 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/162 (66%), Positives = 126/162 (77%) Query: 10 TFKGNPITLVGPELKAGDTAPGFVVSKNLLEDASLSDYAGKIKLISVVPSLDTGVCDAQT 69 TFK P+TLVG E+K GD+AP F V N L +L D GKI+L SVVPSLDTGVCDAQT Sbjct: 5 TFKNGPVTLVGNEIKVGDSAPDFTVLANDLSPVTLKDSEGKIRLFSVVPSLDTGVCDAQT 64 Query: 70 RRFNTEAAELGDDVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFGLAYGVLIKE 129 RRFN EAA LGD+VVI T+S+DLPFAQ RWCGAAGID V T+SDH+D SFG AYGV I+E Sbjct: 65 RRFNEEAANLGDNVVIYTVSVDLPFAQKRWCGAAGIDAVQTVSDHRDLSFGEAYGVYIQE 124 Query: 130 FRLDMRSIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVKEL 171 RL R++FV+D N+ V YVEY+ E +HPNYEAA+ AVK L Sbjct: 125 LRLLTRAVFVVDANNKVTYVEYVPEATDHPNYEAAIEAVKAL 166 >C4FQY0.1 C4FQY0_9FIRM Putative uncharacterized protein Length = 171 Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/167 (64%), Positives = 129/167 (77%) Query: 3 QERTGAATFKGNPITLVGPELKAGDTAPGFVVSKNLLEDASLSDYAGKIKLISVVPSLDT 62 ++RTG TF G PITLVGPE+K G AP F V N L+ +L D+ GK+K+ISVVPSLDT Sbjct: 2 EKRTGVVTFAGGPITLVGPEVKVGQQAPDFTVLSNDLQPKTLKDFEGKVKVISVVPSLDT 61 Query: 63 GVCDAQTRRFNTEAAELGDDVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFGLA 122 GVCDAQTR FN +A L DDVV+LTISMDLPFAQ RWCGAAG+D+VITLSDHKDASFG Sbjct: 62 GVCDAQTRWFNQDATALSDDVVVLTISMDLPFAQKRWCGAAGVDKVITLSDHKDASFGEN 121 Query: 123 YGVLIKEFRLDMRSIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVK 169 YG LI+E RL R + VI+K D V YVEY+ E+ + N++AA+ A+K Sbjct: 122 YGFLIEELRLLTRGVVVINKEDKVTYVEYVPEVTQAVNFDAALEAIK 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 971,763,343 Number of extensions: 36518822 Number of successful extensions: 86655 Number of sequences better than 1.0e-05: 875 Number of HSP's gapped: 85628 Number of HSP's successfully gapped: 875 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)