BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0024.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLD6.1 B3KLD6_9BACI LysR substrate-binding 479 e-133 B1DL34.1 B1DL34_9BACL Transcriptional regulator, LysR family 420 e-115 C0ZD43.1 C0ZD43_BREBN Transcriptional regulator 280 1e-73 B4AL24.1 B4AL24_BACPU HTH-type transcriptional regulator GltC 278 4e-73 A8FE19.1 A8FE19_BACP2 LysR family transcriptional regulator 278 4e-73 >B3KLD6.1 B3KLD6_9BACI LysR substrate-binding Length = 306 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 230/293 (78%), Positives = 262/293 (89%) Query: 1 VELRQLQYFLKVAQKEHVTRAAEELHVAQSAVSRQIHQLEQELGVDLFMQKGRNLQLTPV 60 +ELRQLQYF+KVAQKEHVT+AAEELHVAQSAVSRQIHQLE+ELGV+LFMQKGRNLQLTPV Sbjct: 1 MELRQLQYFVKVAQKEHVTQAAEELHVAQSAVSRQIHQLEEELGVNLFMQKGRNLQLTPV 60 Query: 61 GQLFCKRVESVLKELERSVAEVHEFLDPERGEIRIGFPHSLGTHLIPSIVAEFRKYYPHV 120 GQLFCKRVES++K+L+R+V E+HEFLDPE+GEIRIGFPHSLG HLIPSIVAEFRK YP+V Sbjct: 61 GQLFCKRVESIMKDLDRAVVEIHEFLDPEQGEIRIGFPHSLGIHLIPSIVAEFRKKYPNV 120 Query: 121 KFRFKQGSYPSLIKDVISGEVDLAFVSPFPENDEHVAGDIVMTEELFAILPQNHPLAGEK 180 KFRFKQG +P+LI+DV+ EVDLAFVSPFP+ + V GDIV+TEELFAILP NHPLAGE+ Sbjct: 121 KFRFKQGMFPTLIRDVVGAEVDLAFVSPFPDRHDQVDGDIVLTEELFAILPPNHPLAGEQ 180 Query: 181 VIRLEQLREEKFVLFSQGYSLRPIVWQACLQAGFKPQIAFEGGETDTIRGLVAAGMGVSL 240 I+LEQL+EE+FVLFS+GYSLRPIVW ACL+AGF P+IAFEG ETDTIRGLVAAGMGVSL Sbjct: 181 SIKLEQLKEERFVLFSKGYSLRPIVWHACLEAGFTPKIAFEGEETDTIRGLVAAGMGVSL 240 Query: 241 LPEMALYQTNPMQPAQXXXXXXXXXXXXGLIHRADGKLPLVARSFRTFLLTYF 293 LPEMAL+QTNP+QPA+ GLIHRAD KLP VA++FR FLL YF Sbjct: 241 LPEMALFQTNPLQPARVRISEPKVTRSIGLIHRADEKLPPVAQAFRAFLLQYF 293 >B1DL34.1 B1DL34_9BACL Transcriptional regulator, LysR family Length = 305 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/295 (67%), Positives = 245/295 (83%) Query: 1 VELRQLQYFLKVAQKEHVTRAAEELHVAQSAVSRQIHQLEQELGVDLFMQKGRNLQLTPV 60 +ELRQL YF+KVA+KEHVT+AAEELHVAQSAVSRQIHQLE+ELGV LF+QKGRNLQLTPV Sbjct: 1 MELRQLYYFVKVAKKEHVTQAAEELHVAQSAVSRQIHQLEEELGVKLFLQKGRNLQLTPV 60 Query: 61 GQLFCKRVESVLKELERSVAEVHEFLDPERGEIRIGFPHSLGTHLIPSIVAEFRKYYPHV 120 GQLF KR E +L +LER+V E+HEF+DPE+GEIR+GFPHSLG ++P +VA FRK +P+V Sbjct: 61 GQLFLKRAEVILDDLERAVVEIHEFMDPEKGEIRLGFPHSLGVSVVPQVVAAFRKLHPNV 120 Query: 121 KFRFKQGSYPSLIKDVISGEVDLAFVSPFPENDEHVAGDIVMTEELFAILPQNHPLAGEK 180 KFRF+QG YPSLI+D++ GE+DLAF+SPFP+ E V G++++TEELFAILP +HPLAGE+ Sbjct: 121 KFRFRQGMYPSLIRDMVKGEIDLAFISPFPDEHEQVCGEVLLTEELFAILPPSHPLAGEQ 180 Query: 181 VIRLEQLREEKFVLFSQGYSLRPIVWQACLQAGFKPQIAFEGGETDTIRGLVAAGMGVSL 240 I L QL+E+ FV+FS+GYSLRPIVW+AC +AGF P+I FEG ET+TIRGLVAAGMGVSL Sbjct: 181 EIDLIQLKEDTFVMFSEGYSLRPIVWEACQEAGFTPKIGFEGEETETIRGLVAAGMGVSL 240 Query: 241 LPEMALYQTNPMQPAQXXXXXXXXXXXXGLIHRADGKLPLVARSFRTFLLTYFRD 295 LPEMALY +Q A+ G+IHR++ K+PLVA+ F FLL YF + Sbjct: 241 LPEMALYHAGVLQSAKVRVRTPNVTRNIGIIHRSNEKMPLVAKVFHGFLLRYFNE 295 >C0ZD43.1 C0ZD43_BREBN Transcriptional regulator Length = 300 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 136/293 (46%), Positives = 196/293 (66%) Query: 1 VELRQLQYFLKVAQKEHVTRAAEELHVAQSAVSRQIHQLEQELGVDLFMQKGRNLQLTPV 60 +ELRQ+QYF++VA++EH T A+ LHVAQSA+SRQI LE+ELGV LF+++GRN++LT V Sbjct: 1 MELRQIQYFIEVAKREHFTEASHHLHVAQSALSRQIANLEEELGVSLFLREGRNIKLTAV 60 Query: 61 GQLFCKRVESVLKELERSVAEVHEFLDPERGEIRIGFPHSLGTHLIPSIVAEFRKYYPHV 120 G++F + VE + E+E++ ++ EFLDP RG IR+GF SL + +P++++ FR YP + Sbjct: 61 GKIFLQHVEMAMNEIEKAKEKIEEFLDPSRGTIRVGFTSSLAANPLPTVISGFRARYPDI 120 Query: 121 KFRFKQGSYPSLIKDVISGEVDLAFVSPFPENDEHVAGDIVMTEELFAILPQNHPLAGEK 180 F+ KQGSY LI VI GE+DLAF+ P P ++++V I E + A+LP HPL+ + Sbjct: 121 GFQLKQGSYQGLIDSVIHGEIDLAFLGPVPTHEKNVRSYIFFAENIVALLPAKHPLSKQS 180 Query: 181 VIRLEQLREEKFVLFSQGYSLRPIVWQACLQAGFKPQIAFEGGETDTIRGLVAAGMGVSL 240 +RL QL+E+ FVLF G+ LR I AC Q GF P++AFEG + D I+GLVAAG+GV+L Sbjct: 181 SLRLSQLQEDTFVLFPPGFILRNIAVNACSQMGFSPKVAFEGEDIDAIKGLVAAGLGVTL 240 Query: 241 LPEMALYQTNPMQPAQXXXXXXXXXXXXGLIHRADGKLPLVARSFRTFLLTYF 293 LPE+ L P + + G+I + +LP + F FL +F Sbjct: 241 LPELTLTDNVPRETVKIPISEPLVTRTVGIIIPNNRELPPSEKLFYHFLKEFF 293 >B4AL24.1 B4AL24_BACPU HTH-type transcriptional regulator GltC Length = 300 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 133/293 (45%), Positives = 197/293 (67%) Query: 1 VELRQLQYFLKVAQKEHVTRAAEELHVAQSAVSRQIHQLEQELGVDLFMQKGRNLQLTPV 60 +ELRQL+YF++VA +EHV+ AAE LHVAQSA+SRQI LE+ELGV LF ++GRN++LT + Sbjct: 1 MELRQLRYFVEVADREHVSEAAENLHVAQSAISRQIANLEEELGVALFEREGRNIKLTKI 60 Query: 61 GQLFCKRVESVLKELERSVAEVHEFLDPERGEIRIGFPHSLGTHLIPSIVAEFRKYYPHV 120 G+ F V + LK ++ + ++ E+LDP +G + IGFP SL + ++PS+++ F++ YP V Sbjct: 61 GRQFLDHVRTALKAIDYAKEQIDEYLDPHKGTVNIGFPTSLASQVLPSVISAFKQEYPEV 120 Query: 121 KFRFKQGSYPSLIKDVISGEVDLAFVSPFPENDEHVAGDIVMTEELFAILPQNHPLAGEK 180 F +QGSY LI+ V + ++DLAF+ P P ND + G I+ +E ++A+LP +HP +G++ Sbjct: 121 DFLLRQGSYKFLIEAVKNRDIDLAFLGPVPTNDPQIEGHILFSESIYALLPVSHPFSGQR 180 Query: 181 VIRLEQLREEKFVLFSQGYSLRPIVWQACLQAGFKPQIAFEGGETDTIRGLVAAGMGVSL 240 I L LR++ FVLF +GY LR I AC QAG++P I+ EG + D I+GLV+AGMGV+L Sbjct: 181 SIHLSDLRKDHFVLFPEGYVLRQIAVDACKQAGYEPTISSEGEDLDAIKGLVSAGMGVTL 240 Query: 241 LPEMALYQTNPMQPAQXXXXXXXXXXXXGLIHRADGKLPLVARSFRTFLLTYF 293 LPE A Y+T P A+ G+I ++ A F F+ +F Sbjct: 241 LPESAFYETTPRFTAKIPIDFPQVRRTVGIIASKSREMSPSAHDFYVFVKDFF 293 >A8FE19.1 A8FE19_BACP2 LysR family transcriptional regulator Length = 300 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 132/293 (45%), Positives = 197/293 (67%) Query: 1 VELRQLQYFLKVAQKEHVTRAAEELHVAQSAVSRQIHQLEQELGVDLFMQKGRNLQLTPV 60 +ELRQL+YF++VA +EHV+ AAE LHVAQSA+SRQI LE+ELGV LF ++GRN++LT + Sbjct: 1 MELRQLRYFVEVADREHVSEAAENLHVAQSAISRQIANLEEELGVALFEREGRNIKLTKI 60 Query: 61 GQLFCKRVESVLKELERSVAEVHEFLDPERGEIRIGFPHSLGTHLIPSIVAEFRKYYPHV 120 G+ F V + LK ++ + ++ E+LDP +G + IGFP SL + ++PS+++ F++ YP V Sbjct: 61 GRQFLDHVRTALKAIDYAKEQIDEYLDPHKGTVNIGFPTSLASQVLPSVISAFKQEYPEV 120 Query: 121 KFRFKQGSYPSLIKDVISGEVDLAFVSPFPENDEHVAGDIVMTEELFAILPQNHPLAGEK 180 F +QGSY LI+ V + ++DLAF+ P P ND + G+I+ +E ++A+LP +HP +G++ Sbjct: 121 DFLLRQGSYKFLIEAVKNRDIDLAFLGPVPTNDPQIEGNILFSESIYALLPVSHPFSGQR 180 Query: 181 VIRLEQLREEKFVLFSQGYSLRPIVWQACLQAGFKPQIAFEGGETDTIRGLVAAGMGVSL 240 I L LR++ FVLF +GY LR I AC QAG++P I+ EG + D I+GLV+AGMGV+L Sbjct: 181 SIHLSDLRKDHFVLFPEGYVLRQIAVDACKQAGYEPTISSEGEDLDAIKGLVSAGMGVTL 240 Query: 241 LPEMALYQTNPMQPAQXXXXXXXXXXXXGLIHRADGKLPLVARSFRTFLLTYF 293 LPE A Y+T P + G+I ++ A F F+ +F Sbjct: 241 LPESAFYETTPRFTVKIPIDFPQVRRTVGIIASKSREMSPSAHDFYVFVKDFF 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,752,173,057 Number of extensions: 71081817 Number of successful extensions: 206482 Number of sequences better than 1.0e-05: 22171 Number of HSP's gapped: 189696 Number of HSP's successfully gapped: 22205 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)