BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0023.p (221 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DL33.1 B1DL33_9BACL Peptidase membrane zinc metallopeptidase p... 323 8e-87 B3KLD7.1 B3KLD7_9BACI Peptidase membrane zinc metallopeptidase p... 317 7e-85 C0Z669.1 C0Z669_BREBN Conserved hypothetical membrane protein 278 2e-73 B7GEZ3.1 B7GEZ3_ANOFW Predicted Zn-dependent protease 267 4e-70 Q65FM4.1 Q65FM4_BACLD YugP 267 5e-70 >B1DL33.1 B1DL33_9BACL Peptidase membrane zinc metallopeptidase putative Length = 228 Score = 323 bits (827), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 150/189 (79%), Positives = 169/189 (89%) Query: 1 MYLLVIIAFLFSLWAQFRVKGNFNKWAKVANTSGMTGYDAARRMLDANGLGDVPIEPVRG 60 M L++IAF S+WAQFRVKG FN+WA V T G+TGY AARRMLDANGL DVPIEPVRG Sbjct: 6 MDFLILIAFGLSIWAQFRVKGTFNRWAGVQTTYGLTGYQAARRMLDANGLHDVPIEPVRG 65 Query: 61 ALSDHYDPIHRVVRLSEPVYYERSIAAISVACHEVGHAIQHKVHYPMLTLRHRMFPVVNI 120 LSDHYDPIHRVVRLSEPVYYE SI+A++VACHEVGHAIQHKVHYPML LRHR+FPVVNI Sbjct: 66 TLSDHYDPIHRVVRLSEPVYYESSISAVAVACHEVGHAIQHKVHYPMLVLRHRIFPVVNI 125 Query: 121 ASGVAPFMLLAGFLFSSFNLIGLGIIFFSAAVAFQLVTLPVEFNASNRARQVMVEQGYIR 180 ASG+APF+L+AGFLF + NL+GLGIIFFS AVAFQ++TLPVEFNASNRAR +MV +G+I Sbjct: 126 ASGIAPFLLIAGFLFHAMNLVGLGIIFFSVAVAFQVITLPVEFNASNRARDLMVAEGFIT 185 Query: 181 NEEERGVAK 189 NEEERGVAK Sbjct: 186 NEEERGVAK 194 >B3KLD7.1 B3KLD7_9BACI Peptidase membrane zinc metallopeptidase putative Length = 226 Score = 317 bits (811), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 146/178 (82%), Positives = 161/178 (90%) Query: 12 SLWAQFRVKGNFNKWAKVANTSGMTGYDAARRMLDANGLGDVPIEPVRGALSDHYDPIHR 71 SLWAQFRVKG FNKWAKV N++GMTGYDAAR MLDANGL DVPIEPV G LSDHYDP R Sbjct: 17 SLWAQFRVKGTFNKWAKVENSTGMTGYDAARHMLDANGLHDVPIEPVPGTLSDHYDPTKR 76 Query: 72 VVRLSEPVYYERSIAAISVACHEVGHAIQHKVHYPMLTLRHRMFPVVNIASGVAPFMLLA 131 VVRLSEPVYYER+I+A+SVACHEVGHAIQH HYPML RH+MFPVVN ASG+APF+L+A Sbjct: 77 VVRLSEPVYYERTISAVSVACHEVGHAIQHAEHYPMLVARHKMFPVVNFASGIAPFLLIA 136 Query: 132 GFLFSSFNLIGLGIIFFSAAVAFQLVTLPVEFNASNRARQVMVEQGYIRNEEERGVAK 189 GFLF + NL+GLGIIFFS AVAFQLVTLPVEFNASNRARQ+MV++GYI N+EERGVAK Sbjct: 137 GFLFQAMNLVGLGIIFFSCAVAFQLVTLPVEFNASNRARQLMVQEGYIANDEERGVAK 194 >C0Z669.1 C0Z669_BREBN Conserved hypothetical membrane protein Length = 226 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 130/189 (68%), Positives = 157/189 (83%) Query: 1 MYLLVIIAFLFSLWAQFRVKGNFNKWAKVANTSGMTGYDAARRMLDANGLGDVPIEPVRG 60 M L++IAF SLWAQFRVKG FNK+A+V +SG+TG +AARRMLDANGL +VP++ + G Sbjct: 6 MDFLILIAFGLSLWAQFRVKGTFNKFAEVPTSSGLTGAEAARRMLDANGLTNVPVQHIPG 65 Query: 61 ALSDHYDPIHRVVRLSEPVYYERSIAAISVACHEVGHAIQHKVHYPMLTLRHRMFPVVNI 120 L+DHYDP RVVRLS+PVY+ SIA++SVACHEVGHAIQHKV YPML RHR+FPVVN+ Sbjct: 66 TLTDHYDPTDRVVRLSDPVYFGNSIASLSVACHEVGHAIQHKVSYPMLVARHRIFPVVNL 125 Query: 121 ASGVAPFMLLAGFLFSSFNLIGLGIIFFSAAVAFQLVTLPVEFNASNRARQVMVEQGYIR 180 SGVAP +LLAGF F L+ +GIIFFS AVAFQLVTLPVEFNAS+RA+ +M+ G+IR Sbjct: 126 VSGVAPLLLLAGFFFKMAGLLLIGIIFFSGAVAFQLVTLPVEFNASSRAKDLMIRMGFIR 185 Query: 181 NEEERGVAK 189 NEEERG +K Sbjct: 186 NEEERGASK 194 >B7GEZ3.1 B7GEZ3_ANOFW Predicted Zn-dependent protease Length = 228 Score = 267 bits (683), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 127/189 (67%), Positives = 152/189 (80%) Query: 1 MYLLVIIAFLFSLWAQFRVKGNFNKWAKVANTSGMTGYDAARRMLDANGLGDVPIEPVRG 60 M L++IAF S+WAQF+VKGNF+KW+ V +SG+TG + AR +LD NGL DVP+E V G Sbjct: 6 MDFLILIAFGVSIWAQFKVKGNFSKWSDVPASSGLTGAEVARLILDRNGLYDVPVELVPG 65 Query: 61 ALSDHYDPIHRVVRLSEPVYYERSIAAISVACHEVGHAIQHKVHYPMLTLRHRMFPVVNI 120 L+DHYDPI R VRLSEPVYY RSIAA+SVA HEVGHA+QH+ Y L LRHRMFP+VN Sbjct: 66 TLTDHYDPIARAVRLSEPVYYGRSIAAVSVAAHEVGHAVQHQQAYGALVLRHRMFPLVNF 125 Query: 121 ASGVAPFMLLAGFLFSSFNLIGLGIIFFSAAVAFQLVTLPVEFNASNRARQVMVEQGYIR 180 SG+APF+LL GFL F+LIGLGII FS AVAFQ++TLPVEFNAS+RA+ M+ +G IR Sbjct: 126 TSGIAPFLLLGGFLMQQFSLIGLGIILFSFAVAFQVITLPVEFNASSRAKDFMIAEGIIR 185 Query: 181 NEEERGVAK 189 NEEERGV K Sbjct: 186 NEEERGVNK 194 >Q65FM4.1 Q65FM4_BACLD YugP Length = 226 Score = 267 bits (683), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 126/188 (67%), Positives = 150/188 (79%) Query: 2 YLLVIIAFLFSLWAQFRVKGNFNKWAKVANTSGMTGYDAARRMLDANGLGDVPIEPVRGA 61 YLL A S+WAQF+VK NF K++KV +SG TG + AR++LD NGL DVP+EPVRG Sbjct: 6 YLLTFAALGLSIWAQFKVKSNFEKYSKVEASSGRTGAEVARQILDRNGLYDVPVEPVRGT 65 Query: 62 LSDHYDPIHRVVRLSEPVYYERSIAAISVACHEVGHAIQHKVHYPMLTLRHRMFPVVNIA 121 L+DHYDP RVVRLSEPVYY RSIAA+SVA HE GHA+QH+ Y L LRH+MFPVVN + Sbjct: 66 LTDHYDPTARVVRLSEPVYYGRSIAAVSVASHECGHALQHQESYGALVLRHKMFPVVNFS 125 Query: 122 SGVAPFMLLAGFLFSSFNLIGLGIIFFSAAVAFQLVTLPVEFNASNRARQVMVEQGYIRN 181 SGVAPF+ + G L S NLIGLGII FSAAV FQLVTLPVEFNAS+RA++++V +G IRN Sbjct: 126 SGVAPFLFIGGMLLGSLNLIGLGIILFSAAVFFQLVTLPVEFNASSRAKRIIVSEGMIRN 185 Query: 182 EEERGVAK 189 EERGV+K Sbjct: 186 TEERGVSK 193 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,124,374,057 Number of extensions: 42201623 Number of successful extensions: 140547 Number of sequences better than 1.0e-05: 393 Number of HSP's gapped: 140344 Number of HSP's successfully gapped: 393 Length of query: 221 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 90 Effective length of database: 1,826,543,238 Effective search space: 164388891420 Effective search space used: 164388891420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)