BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0345.0022.p
         (141 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLD8.1 B3KLD8_9BACI Regulatory protein MerR                         128   2e-28
B1DL32.1 B1DL32_9BACL Transcriptional regulator, MerR family          106   6e-22
B7GF67.1 B7GF67_ANOFW Transcriptional regulator, MerR family           58   3e-07
A4J1L2.1 A4J1L2_DESRM Putative transcriptional regulator, MerR f...    53   8e-06

>B3KLD8.1 B3KLD8_9BACI Regulatory protein MerR
          Length = 149

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 81/125 (64%)

Query: 17  TIDYYTKLGLIAPESRSVKNYRLYSHETLVALERINQLKQEKYTLDEIKSMMSKWNAATS 76
           TIDYYTKLGLI+PE R++KNYRLYS ETL  LERINQLKQEKYTLDEIK  + +W +   
Sbjct: 25  TIDYYTKLGLISPEKRTLKNYRLYSSETLSTLERINQLKQEKYTLDEIKERLDRWKSVAD 84

Query: 77  ENDVSDXXXXXXXXXXXXXXXVKALEPVISGLKPVQXXXXXXXXXPQGVACMEAIKLLLT 136
           ++++++               VK L P++S LKP Q         P+G AC+E++++LL 
Sbjct: 85  DSEMTEKLTKLEIQMKQLERDVKELNPLLSELKPSQAREVLANILPKGAACIESLQILLN 144

Query: 137 QGPPM 141
           Q   M
Sbjct: 145 QFTSM 149


>B1DL32.1 B1DL32_9BACL Transcriptional regulator, MerR family
          Length = 118

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 66/118 (55%)

Query: 24  LGLIAPESRSVKNYRLYSHETLVALERINQLKQEKYTLDEIKSMMSKWNAATSENDVSDX 83
           +GL+ P  RS KNYRLY  ETLV L+RI Q+K EKYTLDEIK  +  W+  T E  VS  
Sbjct: 1   MGLLEPSERSAKNYRLYHDETLVRLKRIEQMKNEKYTLDEIKEALDGWSKVTPEEQVSQK 60

Query: 84  XXXXXXXXXXXXXXVKALEPVISGLKPVQXXXXXXXXXPQGVACMEAIKLLLTQGPPM 141
                         VK LEPVI  LKP Q         PQ  AC+EA+ LL+ +GP M
Sbjct: 61  LTDLQYHLSQLEREVKELEPVIKQLKPRQANRLYTRLMPQTAACIEALMLLINKGPFM 118


>B7GF67.1 B7GF67_ANOFW Transcriptional regulator, MerR family
          Length = 156

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 17  TIDYYTKLGLIAPESRSVKNYRLYSHETLVALERINQLKQEKYTLDEIK---SMMSKWNA 73
           TIDYYT+LGL+ P  RS  NYR Y  E++  L+ I+ LK++  TL+EI+    +M K  A
Sbjct: 25  TIDYYTQLGLLEP-VRSETNYRYYPEESIEHLQLIHALKKQHLTLEEIRERLQLMKKQPA 83

Query: 74  ATSENDVSDXXXXXXXXXXXXXXXVKALEPVISGLKPVQXXXXXXXXXPQGVACMEAIKL 133
               N++ D               V  L+P++  L   Q          QG A + ++ +
Sbjct: 84  PM--NEIIDKIEHLQEQMQHIQEEVLELKPLLKQLNEQQIKMMTKPLTQQGYALLHSLGI 141

Query: 134 LLTQGP 139
           LL   P
Sbjct: 142 LLGGNP 147


>A4J1L2.1 A4J1L2_DESRM Putative transcriptional regulator, MerR family
          Length = 146

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 17 TIDYYTKLGLIAPESRSVKNYRLYSHETLVALERINQLKQEKYTLDEIKS 66
          T+DYYTKLGL+ P  RS  NYR Y+ + L+ L+ I  LK ++ TL+EIK 
Sbjct: 17 TVDYYTKLGLLEP-VRSESNYRYYNQDALIRLKLIEMLKSQRLTLEEIKG 65


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 636,120,553
Number of extensions: 17490310
Number of successful extensions: 31643
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 31776
Number of HSP's successfully gapped: 5
Length of query: 141
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 37
Effective length of database: 2,080,910,643
Effective search space: 76993693791
Effective search space used: 76993693791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)