BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0020.p (360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLE0.1 B3KLE0_9BACI Putative uncharacterized protein 349 2e-94 B1DL30.1 B1DL30_9BACL Putative uncharacterized protein 206 2e-51 C0Z5S4.1 C0Z5S4_BREBN Putative uncharacterized protein 186 3e-45 C0GHD9.1 C0GHD9_9FIRM Putative CBS domain and cyclic nucleotide-... 159 4e-37 Q2B6V0.1 Q2B6V0_9BACI Putative uncharacterized protein 152 3e-35 >B3KLE0.1 B3KLE0_9BACI Putative uncharacterized protein Length = 359 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 172/342 (50%), Positives = 232/342 (67%), Gaps = 1/342 (0%) Query: 18 IAAAGSPQELKARRIACQTVLLEQLNVIPVEEWLSRVNAMHDRIAGAAVSICEAQMKEAG 77 I A + Q+L+ RIACQ L+E + + + EW++ VN MHD I A +ICE M EAG Sbjct: 16 IRKAATAQQLRDERIACQNHLIEMRSNMELREWIASVNTMHDLIGQRAAAICEQDMWEAG 75 Query: 78 YGPPPCAYSFIVFGSAGRQEATLWSDQDNGLIVEGEPDGIKKVYFEAFGVMLSNVLEEAG 137 +G PP Y+F+ FGS GRQEATLWSDQDNGLI+ E + +F FG+ L+N+LE G Sbjct: 76 FGRPPARYAFVAFGSCGRQEATLWSDQDNGLIIGDELEEEALPFFREFGLRLANLLEYLG 135 Query: 138 YEKCDGKVMCSEPLWRKTLPEWKRQLAGWMSQLEWEPIRYLIIASDMRHVAGNTALSTEW 197 Y KC GKVMCSEPLW K L +WK Q++ W +WEPIR IIASD+RH++G+T LS W Sbjct: 136 YPKCSGKVMCSEPLWSKRLGDWKNQISEWCGDRQWEPIRNFIIASDLRHLSGDTELSEAW 195 Query: 198 REALHAGFVNNEKLSTAVLRNTVRHKATLNLLGQVLTERFGDYAGGFDVKYGVYIPLVNI 257 + + + + AVLRNTV+HKATLN++G+++TERFG++AG FDVKYGVYIPLVN Sbjct: 196 VDHFRSSVEQHPDIGHAVLRNTVKHKATLNVMGRIVTERFGEHAGEFDVKYGVYIPLVNS 255 Query: 258 VRHLALLHGVRDSSTLKRLEQ-LAKLGKYEHLDDIRRAFLTAQRMRVNTPYAVQDGLLSS 316 +R +AL G+ ++ST KR+E+ + G L+ ++RAFLTA R+R +TP V+DGL++S Sbjct: 256 IRTMALQRGIIETSTQKRMEKVMLLEGGNLLLESVQRAFLTALRLRNDTPIRVEDGLITS 315 Query: 317 SDYIAESDLKNKQXXXXXXXXXXXXXXXHKALQRQLRSAERR 358 S YI ++ LKNK H++LQR+ R AERR Sbjct: 316 SGYIPQNQLKNKTMQYELRDTLGVVRRVHRSLQREHRFAERR 357 >B1DL30.1 B1DL30_9BACL Putative uncharacterized protein Length = 355 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 150/242 (61%), Gaps = 4/242 (1%) Query: 42 LNVIPVEEWLSRVNAMHDRIAGAAVSICEAQMKEAGYGPPPCAYSFIVFGSAGRQEATLW 101 L + PVE++ ++N +HD + ++ + EA+M G G PP Y++++FGS GRQE TL Sbjct: 37 LQMSPVEQFNEQLNELHDTLISRSIILAEAEMARLGSGSPPVPYAYLLFGSGGRQEQTLS 96 Query: 102 SDQDNGLIVEGEPDGIK---KVYFEAFGVMLSNVLEEAGYEKCDGKVMCSEPLWRKTLPE 158 SDQD+G++ E +P G + YF+ ++ ++L ++GY C+G V+ + P W +L E Sbjct: 97 SDQDSGIVFE-DPAGDSEDTRAYFQQLTSIIVSILHQSGYPLCEGNVLSNNPEWCMSLTE 155 Query: 159 WKRQLAGWMSQLEWEPIRYLIIASDMRHVAGNTALSTEWREALHAGFVNNEKLSTAVLRN 218 WK +L GW + WE +RYL+I +D R V G+ L+ E R+ + ++ +L N Sbjct: 156 WKVKLNGWFEEPAWEAVRYLLILADGRSVYGDHRLAFELRDHYFNNVTEHPNITRRMLDN 215 Query: 219 TVRHKATLNLLGQVLTERFGDYAGGFDVKYGVYIPLVNIVRHLALLHGVRDSSTLKRLEQ 278 T+RHK L L G +L E++G AG D+KYG YIPLVN +R +A+ G+RD+STL R+ Sbjct: 216 TMRHKVLLGLFGHLLKEQYGTDAGSLDIKYGAYIPLVNAIRLMAVQAGIRDTSTLSRIRT 275 Query: 279 LA 280 L Sbjct: 276 LT 277 >C0Z5S4.1 C0Z5S4_BREBN Putative uncharacterized protein Length = 389 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 154/281 (54%), Gaps = 10/281 (3%) Query: 54 VNAMHDRIAGAAVSICEAQMKEAGYGPPPCAYSFIVFGSAGRQEATLWSDQDNGLIVEGE 113 VN +HD + V + + + G G PP ++F+ FGS GR E L SDQDNGL+ + Sbjct: 79 VNLIHDNLIRQGVLLAVNDLAKRGLGTPPIPFAFLQFGSGGRSEQALISDQDNGLVYQ-L 137 Query: 114 PDGI-----KKV--YFEAFGVMLSNVLEEAGYEKCDGKVMCSEPLWRKTLPEWKRQLAGW 166 PD + +K+ YF+ G + LE AGY C G V C P WR + +W Q+ W Sbjct: 138 PDHLGEQEKEKIHGYFQLLGATIVAGLEVAGYPPCQGNVTCLSPKWRGSTEQWLDQMDRW 197 Query: 167 MSQLEWEPIRYLIIASDMRHVAGNTALSTEWREALHAGFVNNEKLSTAVLRNTVRHKATL 226 +S WE RYL++ASD+R + G +A+ T + N L ++ NT+ ++ L Sbjct: 198 VSHPIWENARYLLLASDVRVLWGESAIFTPVHDRFRQLLAGNVFLLNRLVSNTLHYRVPL 257 Query: 227 NLLGQVLTERFGDYAGGFDVKYGVYIPLVNIVRHLALLHGVRDSSTLKRLEQLAKLGKY- 285 + G+VL E G + G +VKYG+Y+PLVN VRH AL +G+ SSTL+RL+ L + G + Sbjct: 258 GIFGRVLPEVHGRFRGAINVKYGIYLPLVNCVRHFALANGIFASSTLERLDLLGEKGVWS 317 Query: 286 -EHLDDIRRAFLTAQRMRVNTPYAVQDGLLSSSDYIAESDL 325 D++ F Q +R+ P +DG +S+ YI +L Sbjct: 318 KSFCDEVAAYFRQVQGLRLIAPLHWEDGQYTSNSYIKLGEL 358 >C0GHD9.1 C0GHD9_9FIRM Putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase Length = 644 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 3/236 (1%) Query: 49 EWLSRVNAMHDRIAGAAVSICEAQMKEAGYGPPPCAYSFIVFGSAGRQEATLWSDQDNGL 108 E L + DR+ + +CE +M + G+G PP AYS+I GS+GRQE + +DQDNG+ Sbjct: 332 EILKIITEFFDRLTRKVIQVCEREMIKEGHGAPPVAYSWITMGSSGRQEQFVKTDQDNGI 391 Query: 109 IVEGEPDGIKK---VYFEAFGVMLSNVLEEAGYEKCDGKVMCSEPLWRKTLPEWKRQLAG 165 I E PD ++ YF F + L + G+ KC G VM S P W ++ W+ + Sbjct: 392 IYENVPDDKEEEVAQYFHVFAEKVVEGLYQCGFAKCKGNVMASNPFWCRSFKNWREVITE 451 Query: 166 WMSQLEWEPIRYLIIASDMRHVAGNTALSTEWREALHAGFVNNEKLSTAVLRNTVRHKAT 225 W+++L+ E +R + I D RHV G +L R + F + + + ++ + H+ Sbjct: 452 WLNKLDSENVRMMTIFLDFRHVYGKKSLCDLLRNFVTRSFQKSSTVLLFLAKDDLNHRVP 511 Query: 226 LNLLGQVLTERFGDYAGGFDVKYGVYIPLVNIVRHLALLHGVRDSSTLKRLEQLAK 281 LN Q++TE+ ++ ++K + +V+ +R +L G+ D+++ RLEQLAK Sbjct: 512 LNFFKQIITEKSKEHRNMVNLKGAACVHMVDCLRIFSLREGIVDTNSFSRLEQLAK 567 >Q2B6V0.1 Q2B6V0_9BACI Putative uncharacterized protein Length = 324 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 132/245 (53%), Gaps = 6/245 (2%) Query: 52 SRVNAMHDRIAGAAVSICEAQMKEAGYGPPPCAYSFIVFGSAGRQEATLWSDQDNGLIVE 111 S++N +HD A + +++ GP + + V GS GR E + SDQD+G++ Sbjct: 26 SKINEIHDE---AMKYVFRQSVQKVRKGPDESDFVWFVTGSGGRLEQGVISDQDHGIVFT 82 Query: 112 GEPDGIKKVYFEAFGVMLSNVLEEAGYEKCDGKVMCSEPLWRKTLPEWKRQLAGWMSQLE 171 G + + YF+ G LS L E GY C+GKVM S PLWR+T WK QL W+ + Sbjct: 83 GGEE--EAAYFQELGQELSYGLNETGYPYCEGKVMSSNPLWRRTAEAWKEQLERWIEEES 140 Query: 172 WEPIRYLIIASDMRHVAGNTALSTEWREALHAGFVNNEKLSTAVLRNTVRHKATLNLLGQ 231 WE IRYL I D R + G+ +E + +H + +L + N++ K + LGQ Sbjct: 141 WESIRYLQIFYDARALEGSGVYISELKSYVHTKMMAGPRLLKRLAENSMHIKPAVGPLGQ 200 Query: 232 VLTERFGDYAGGFDVKYGVYIPLVNIVRHLALLHGVRDSSTLKRLEQLAKLGKYEH-LDD 290 +L E G + G D+K ++P VN +R LA+ G ++STL+R+ +LA+ +Y+ L+ Sbjct: 201 ILVEEKGKFEGFIDLKQTAFLPYVNSIRLLAMKEGFFETSTLERISRLAEKAEYKDALEK 260 Query: 291 IRRAF 295 R F Sbjct: 261 AERNF 265 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,052,807,646 Number of extensions: 82358981 Number of successful extensions: 175352 Number of sequences better than 1.0e-05: 411 Number of HSP's gapped: 174805 Number of HSP's successfully gapped: 411 Length of query: 360 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 223 Effective length of database: 1,770,017,148 Effective search space: 394713824004 Effective search space used: 394713824004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)