BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0019.p (249 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLE1.1 B3KLE1_9BACI DNA polymerase III, epsilon subunit EC=2.7... 305 3e-81 Q9K697.1 Q9K697_BACHD BH3832 protein 169 2e-40 Q2B6U9.1 Q2B6U9_9BACI Putative uncharacterized protein 164 6e-39 C0Z5S3.1 C0Z5S3_BREBN Putative uncharacterized protein 162 2e-38 B1DL29.1 B1DL29_9BACL Exonuclease RNase T and DNA polymerase III 153 1e-35 >B3KLE1.1 B3KLE1_9BACI DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 246 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 147/248 (59%), Positives = 184/248 (74%), Gaps = 5/248 (2%) Query: 1 MKEP-NKGGGFWNNLRQGGMPSAIASIRGGETAQQTAQQMAFIRSLMREKRRPEVLHTPL 59 M EP GGFW +LR G + SAIAS+RG QTAQQ+AFIRS M++ RRPEVL TPL Sbjct: 1 MTEPVQSNGGFWRSLRSGNINSAIASMRGA----QTAQQLAFIRSQMKDNRRPEVLGTPL 56 Query: 60 SELETVIFDLETTGFSHQHGDEILSFGAXXXXXXXXXXXXCFYTLVNCQTSIPEDITKLT 119 ELE V+FDLETTGF+HQHGDEILSFGA F+ +VN + I +LT Sbjct: 57 DELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVNSGAPVSPFIAELT 116 Query: 120 GISEEMTSAAPSLIDGLHNFMSFVGQQVLVAHGSNHDKSFLNAALWKTSKVQLTHRVLDT 179 GI+++M AAP L++GLH+FM+F+G +VLVAH + HD+ FLNAALWKTSKV+LTHR+LDT Sbjct: 117 GITQQMVDAAPPLMEGLHDFMAFIGGRVLVAHAAAHDRGFLNAALWKTSKVRLTHRLLDT 176 Query: 180 MMLARWLEPHRSNYTLDELLAVHGIPIQGRHNALEDARMTAQLWVHYLREISKKKQVDTL 239 MMLA+ L P + +Y+LDELL GIP++GRH+AL DARMTA+LW Y+++I + Q TL Sbjct: 177 MMLAQRLYPEQKDYSLDELLRSSGIPVEGRHHALSDARMTARLWADYMKDIQARGQATTL 236 Query: 240 GDLYAYLS 247 GDLY YLS Sbjct: 237 GDLYVYLS 244 >Q9K697.1 Q9K697_BACHD BH3832 protein Length = 265 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 131/216 (60%), Gaps = 2/216 (0%) Query: 32 AQQTAQQMAFIRSLMREKRRPEVLHTPLSELETVIFDLETTGFSHQHGDEILSFGAXXXX 91 A +AQQ +++R L RE RR +VL PL +L V+FDLET+GF GD ILS GA Sbjct: 48 APSSAQQWSYVRQLQREIRRSDVLDLPLEKLPVVVFDLETSGFYPDQGDRILSIGAVKVV 107 Query: 92 XXXXXXXXCFYTLVNCQTSIPEDITKLTGISEEMTSAAPSLIDGLHNFMSFVGQQVLVAH 151 FY++V+ T PE+I +LTG+S E AAP L L +F +F+ LVAH Sbjct: 108 GLTIQEEETFYSVVHTDTVPPENILELTGLSVEELEAAPPLTSVLESFYAFIRHSTLVAH 167 Query: 152 GSNHDKSFLNAALWKTSKVQLTHRVLDTMMLARWLEPHRSNYTLDELLAVHGIPIQGRHN 211 ++H+K+F++ W+T K+ HRV+DT L + + P + TLD+ A + IP+Q RH+ Sbjct: 168 HASHEKAFMSHVTWQTMKLPFEHRVIDTSFLTKIVAP-QELVTLDDCCAYYSIPVQNRHH 226 Query: 212 ALEDARMTAQLWVHYLREISKKKQVDTLGDLYAYLS 247 A ED+ MTA+LW+ +++ +TL D+Y +L+ Sbjct: 227 AFEDSLMTAKLWI-AAIAAAREAGFETLRDIYVHLA 261 >Q2B6U9.1 Q2B6U9_9BACI Putative uncharacterized protein Length = 243 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 18 GMPSAIAS-IRGGETAQQTAQQMAFIRSLMREKRRPEVLHTPLSELETVIFDLETTGFSH 76 G+P + S + GG Q +QQ AF+R L +E R E L PL +E ++ D+ETTGF Sbjct: 12 GLPGKLNSGVFGGMQGGQNSQQQAFLRRLHKEIRAEEALSVPLDRMEAIVMDIETTGFFP 71 Query: 77 QHGDEILSFGAXXXXXXXXXXXXCFYTLVNCQTSIPEDITKLTGISEEMTSAAPSLIDGL 136 GDEI+S GA FY+L+ + ++ I +LTG+ AP L + L Sbjct: 72 DQGDEIISIGAVKIENGTINEDKKFYSLIRYEKTLSPQIEQLTGLRGSQLKEAPPLPEVL 131 Query: 137 HNFMSFVGQQVLVAHGSNHDKSFLNAALWKTSKVQLTHRVLDTMMLARWLEPHRSNYTLD 196 F F + ++AH + H+KSFL A WK K L HR++DT L R EP + L+ Sbjct: 132 IEFFKFCEARTIIAHHARHEKSFLQNASWKHFKAPLKHRIIDTSFLYRIAEPELNLQRLE 191 Query: 197 ELLAVHGIPIQGRHNALEDARMTAQLWVHYLREISKKKQVDTLGDLY 243 +L + +GIP+ RH+ALEDAR+ A+LW Y+ ++ + K TL D+Y Sbjct: 192 DLCSHNGIPVMERHHALEDARLAAELWCCYISKV-RDKGCMTLKDVY 237 >C0Z5S3.1 C0Z5S3_BREBN Putative uncharacterized protein Length = 235 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 112/192 (58%), Gaps = 1/192 (0%) Query: 37 QQMAFIRSLMR-EKRRPEVLHTPLSELETVIFDLETTGFSHQHGDEILSFGAXXXXXXXX 95 Q +A++RS+ + K+ PL +LE V+ DLETTGF HGD I+S GA Sbjct: 25 QHIAYLRSISKVNKQVDSSADIPLHDLEVVVVDLETTGFYPDHGDAIISMGAVAMRGEHL 84 Query: 96 XXXXCFYTLVNCQTSIPEDITKLTGISEEMTSAAPSLIDGLHNFMSFVGQQVLVAHGSNH 155 FYTLVN +IP I LTGI+++M + AP L++ L F +VG + LVAH S H Sbjct: 85 LLGDSFYTLVNPGRAIPPHIRSLTGITDDMVADAPPLLEALSRFFQYVGDRPLVAHHSRH 144 Query: 156 DKSFLNAALWKTSKVQLTHRVLDTMMLARWLEPHRSNYTLDELLAVHGIPIQGRHNALED 215 ++ FL + LWKTS+ THR+LDTM+L R L N +LD L A H IPI RH+A D Sbjct: 145 EREFLRSGLWKTSRRPFTHRMLDTMLLIRLLNNPIGNGSLDALCAAHDIPISRRHHAYCD 204 Query: 216 ARMTAQLWVHYL 227 A LW YL Sbjct: 205 ALAAGTLWAKYL 216 >B1DL29.1 B1DL29_9BACL Exonuclease RNase T and DNA polymerase III Length = 165 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/169 (47%), Positives = 108/169 (63%), Gaps = 6/169 (3%) Query: 1 MKEPNKGGGFWNNLRQGGMPSAIASIRGGETAQQTAQQMAFIRSLMREKRRPEVLHTPLS 60 MKEP G WN + GG A+AS+ G Q AQQMAFIRS+ +E+R+ +L TPL Sbjct: 1 MKEPKGVGRMWNLYKMGGFTPALASMLGS----QNAQQMAFIRSINKEQRKQSMLDTPLK 56 Query: 61 ELETVIFDLETTGFSHQHGDEILSFGAXXXXXXXXXXXXCFYTLVNCQTSIPEDITKLTG 120 EL+ V+FDLETTGF +GDEI+SFGA FY+LVN + IP I +LTG Sbjct: 57 ELDIVVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPKRRIPRQIIELTG 116 Query: 121 ISEEMTSAAPSLIDGLHNFMSFVGQQVLVAHGSNHDKSFLNAALWKTSK 169 I+ EM AP L+ LH+FM F+G+++L+AH ++ + LNAA + TSK Sbjct: 117 ITNEMVQDAPDLMQVLHDFMEFIGRRLLIAHAADM-TAVLNAA-YATSK 163 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,370,125,534 Number of extensions: 47755409 Number of successful extensions: 120163 Number of sequences better than 1.0e-05: 1641 Number of HSP's gapped: 119102 Number of HSP's successfully gapped: 1641 Length of query: 249 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 117 Effective length of database: 1,817,122,223 Effective search space: 212603300091 Effective search space used: 212603300091 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)