BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0345.0017.p
         (189 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHL3.1 B3KHL3_9BACI Redoxin domain protein                          163   9e-39
Q7WS25.1 Q7WS25_BRECH Thiol-disulfide oxidoreductase                  129   1e-28
C0ZEH8.1 C0ZEH8_BREBN Thiol-disulfide oxidoreductase                  124   4e-27
C3B202.1 C3B202_BACMY Thioredoxin                                     112   2e-23
C2QAB8.1 C2QAB8_BACCE Thioredoxin                                     112   2e-23

>B3KHL3.1 B3KHL3_9BACI Redoxin domain protein
          Length = 183

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 55  APAFTLQGVNGENYSVEGAREKAVLVNFWASWCEPCQQEAPALNALALKYKDVLDVYGIN 114
           AP FTL+G++ ++YS  GAR+KA+LVNFWASWCEPC+QEAP L+ LA +Y   L++YG+N
Sbjct: 49  APTFTLKGMDDKSYSGGGARDKAMLVNFWASWCEPCKQEAPELDKLAAEYASELEIYGVN 108

Query: 115 VTSQDYKPNAERFVKKYMLAFPVMYDLKGEIFDK-YKGAVFPTNVLVDKNGVIAEVILGL 173
           V+  D    A +FV+ + L +P++ D KGE+F++ YKG VFPTNVL+D+NGVI E+ILG 
Sbjct: 109 VSKYDNAKKARQFVQDFNLQYPILLDTKGEVFEELYKGQVFPTNVLIDRNGVIQEIILGA 168

Query: 174 LSPEELEKKIITL 186
             P++L KK+  L
Sbjct: 169 PDPKDLRKKVAKL 181


>Q7WS25.1 Q7WS25_BRECH Thiol-disulfide oxidoreductase
          Length = 177

 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 82/132 (62%)

Query: 55  APAFTLQGVNGENYSVEGAREKAVLVNFWASWCEPCQQEAPALNALALKYKDVLDVYGIN 114
           AP FTL G++ + Y VEG R K VL+NFWASWC PC+ EAP L  L  KYKD +D YG+N
Sbjct: 41  APHFTLTGLDNQVYKVEGKRPKPVLLNFWASWCGPCRMEAPDLQRLYEKYKDQVDFYGVN 100

Query: 115 VTSQDYKPNAERFVKKYMLAFPVMYDLKGEIFDKYKGAVFPTNVLVDKNGVIAEVILGLL 174
           VT+ D    A  FV+ Y L FP+  D+ G + ++Y    FPT  LVD  GV+   I+G++
Sbjct: 101 VTNSDSPEAAAAFVQAYKLTFPIPMDVAGTVSNRYLIQAFPTTYLVDTQGVVRAKIIGMI 160

Query: 175 SPEELEKKIITL 186
               LE ++  L
Sbjct: 161 DAPTLELELRKL 172


>C0ZEH8.1 C0ZEH8_BREBN Thiol-disulfide oxidoreductase
          Length = 177

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 83/132 (62%)

Query: 55  APAFTLQGVNGENYSVEGAREKAVLVNFWASWCEPCQQEAPALNALALKYKDVLDVYGIN 114
           AP FTL G++ + Y VEG R K +++NFWASWC PC+ EAP L  +  KY   +D+YG+N
Sbjct: 41  APHFTLTGLDQQTYKVEGKRAKPLVLNFWASWCGPCKLEAPDLQKVYEKYGGQVDLYGVN 100

Query: 115 VTSQDYKPNAERFVKKYMLAFPVMYDLKGEIFDKYKGAVFPTNVLVDKNGVIAEVILGLL 174
           VTS D    A  FV  Y L FP+  D+ G + ++YK   FPT  L+D +G++ + I+G++
Sbjct: 101 VTSNDSPEAAMAFVTNYKLTFPIPMDVAGTVSNRYKVMAFPTTYLIDADGIVRKKIIGMV 160

Query: 175 SPEELEKKIITL 186
               LE ++  L
Sbjct: 161 DAPTLELELRQL 172


>C3B202.1 C3B202_BACMY Thioredoxin
          Length = 193

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 79/132 (59%)

Query: 55  APAFTLQGVNGENYSVEGAREKAVLVNFWASWCEPCQQEAPALNALALKYKDVLDVYGIN 114
           AP  TL+G++G+ YS+  A+ K  ++NFWASWC PC+ EAP L  L  KYK  ++++ +N
Sbjct: 59  APKITLKGLDGKLYSLNDAKGKPYVINFWASWCGPCEMEAPDLVRLYDKYKGEIEIFAVN 118

Query: 115 VTSQDYKPNAERFVKKYMLAFPVMYDLKGEIFDKYKGAVFPTNVLVDKNGVIAEVILGLL 174
            T  D    A+ F  ++   FPV+ D+ G     YK    PT   VDK+G+I +   G+L
Sbjct: 119 ATIGDAVQEAKAFADRFGFKFPVLLDMDGVAGLDYKIVSLPTTFFVDKDGIIVDQARGVL 178

Query: 175 SPEELEKKIITL 186
            P++LEKK   L
Sbjct: 179 PPDQLEKKFKQL 190


>C2QAB8.1 C2QAB8_BACCE Thioredoxin
          Length = 184

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 79/135 (58%)

Query: 55  APAFTLQGVNGENYSVEGAREKAVLVNFWASWCEPCQQEAPALNALALKYKDVLDVYGIN 114
           AP  TL+G++G+ YS+  A+ K  ++NFWASWC PC+ EAP L     KYK  ++++ +N
Sbjct: 50  APDITLKGLDGKLYSLNDAKGKPYIINFWASWCGPCEMEAPDLVRFYDKYKKDIEIFAVN 109

Query: 115 VTSQDYKPNAERFVKKYMLAFPVMYDLKGEIFDKYKGAVFPTNVLVDKNGVIAEVILGLL 174
            T  D    A  F  +Y   FPV+ D+ G     YK    PT   V+K+G+I + + G+L
Sbjct: 110 ATVSDPVQEASAFADRYGFEFPVLLDMDGVAGLDYKVFSLPTTFFVNKDGIIVDHVRGVL 169

Query: 175 SPEELEKKIITLTGS 189
            P++LEKK   L  S
Sbjct: 170 PPDQLEKKFKKLIES 184


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,000,394,733
Number of extensions: 37414451
Number of successful extensions: 90135
Number of sequences better than 1.0e-05: 1548
Number of HSP's gapped: 90264
Number of HSP's successfully gapped: 1549
Length of query: 189
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 61
Effective length of database: 1,854,806,283
Effective search space: 113143183263
Effective search space used: 113143183263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)