BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0013.p (477 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHK8.1 B3KHK8_9BACI ErfK/YbiS/YcfS/YnhG family protein 318 9e-85 C0ZHZ6.1 C0ZHZ6_BREBN Putative uncharacterized protein 108 8e-22 Q5WC42.1 YKUD_BACSK Spore protein ykuD homolog 95 1e-17 B1DJN1.1 B1DJN1_9BACL ErfK/YbiS/YcfS/YnhG family protein 91 2e-16 A6CJY9.1 A6CJY9_9BACI Putative uncharacterized protein 90 4e-16 >B3KHK8.1 B3KHK8_9BACI ErfK/YbiS/YcfS/YnhG family protein Length = 468 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 195/485 (40%), Positives = 258/485 (53%), Gaps = 25/485 (5%) Query: 1 MKNSQHLKAYVQMHPDNKMAWYLLGKEYYKNGQHGKANYCFNXXXXEVYEAFEHSKVPAE 60 M NS +LK YV+ HPDNKMAWYLLGKEY + G+ GKANYC+N VYEAFE S+VP++ Sbjct: 1 MNNSLYLKRYVETHPDNKMAWYLLGKEYEQAGEQGKANYCYNKAEG-VYEAFELSQVPSD 59 Query: 61 MLREYEEGLIRENRQRHESXXXXXXXXXXXXXXXXXXIPSAVAPGVNLDESGASVPEAAA 120 + + YE L+ + + +P A APG S A Sbjct: 60 IWKNYEHRLLEMEKDKERKRKRTRRLLAALVLLLLVFLPPAQAPG--------SATGNLA 111 Query: 121 GDL---EEPVAAKP-TEEEASPVPAVLXXXXXXXXXXXXXXXXXXXLKN-REAPSKTAML 175 DL EP +A +E+ L L++ ++ P+ + L Sbjct: 112 EDLFPPHEPASANALNKEKPDSRKEPLYTAVASGQGKDSAGALSSLLQHPQQLPNWSVAL 171 Query: 176 AMKKSGRWLIWKKNLPLAAVIEKSANGKVVYQSYDXXXXXXXX--XXXGGLKKQAQIWQG 233 MK+SG+WL+W +++ + ++ G + Q Y+ LK+ A W Sbjct: 172 EMKRSGKWLLWSRDMERLYGLHRNDQGAIAIQPYEGAAEECDCEPADSSRLKRSAGQWAD 231 Query: 234 KQEELAALWSAIRSYNSSKGKPPESLKELTRPFPENVMGKTTPLMKQEFXXXXXXXXXXX 293 Q E A L A + Y + G+ P+SL ELT+P+P N + + M+Q F Sbjct: 232 LQVETAVLQEAAKQYKARHGRLPKSLDELTQPYPNNWLSGRSKAMEQMFETLMQQQSQGA 291 Query: 294 XXXXXXXXXXVTTEGTAAGNGTVE-DTANRSKGQPPFFSSPLAIIVDKQNHRLAVTSGNI 352 G GN T E S PFF PL +I+D++ HRLAV SG I Sbjct: 292 GG--------QGQAGQQPGNSTEEPGYWGTSPNGDPFFEQPLQVIIDRKRHRLAVVSGGI 343 Query: 353 ILRNYAVGLGGEKTPEGEFVISDKVVNPNGHDNGEFGSRGMQLSDTNYAIHGTNEPDSIG 412 +LRNYAVGLGG KTP G+F I+DKVVNPNG G +G+RGMQLS+T YAIHGT + DSIG Sbjct: 344 LLRNYAVGLGGAKTPLGDFHINDKVVNPNGTTKGPYGTRGMQLSNTLYAIHGTLDVDSIG 403 Query: 413 KDESLGCIRMKREDVEELFAMVPMGTKVQISKGVLPDELLLPDERYPSGTPLDQTNPNKV 472 +ES GCIRM EDVEELF +VPMGT V+I +GVLP++L P ER+ QTNP KV Sbjct: 404 ANESEGCIRMLTEDVEELFDLVPMGTVVKIREGVLPEDLWTPKERFKLKHTQGQTNPGKV 463 Query: 473 YHWLN 477 YHWL+ Sbjct: 464 YHWLD 468 >C0ZHZ6.1 C0ZHZ6_BREBN Putative uncharacterized protein Length = 474 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 16/153 (10%) Query: 333 PLAIIVDKQNHRLAVTSGNIILRNYAVGLG-GEKTPEGEFVISDKVVNPNGHDNGEFGSR 391 PL + + H L + SG+ ++R+Y V +G + TPEG + I K+ P GHDN +G+R Sbjct: 330 PLQLQLTTSTHTLKLISGSHLVRSYPVAIGKNDSTPEGYYTIQQKINQPRGHDNI-YGTR 388 Query: 392 GMQLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVEELFAMVPMGTKVQISKGVLPDE- 450 GM + YA+HGTN P+SIG SLGC+R+ VEEL++ V +GT+ IS P + Sbjct: 389 GMVFQENGYALHGTNHPESIGSSVSLGCVRLYNAAVEELYSFVSLGTEFMISNAPSPAQP 448 Query: 451 ------LLLPDERYPSGTPLDQTNPNKVYHWLN 477 +LP P ++T P +Y+WL+ Sbjct: 449 WSNPAPFVLP------AGPEEET-PQVIYNWLH 474 >Q5WC42.1 YKUD_BACSK Spore protein ykuD homolog Length = 165 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 6/112 (5%) Query: 333 PLAIIVDKQNHRLAVTSGNIILRNYAVGLGG--EKTPEGEFVISDKVVNPNGHDNGEFGS 390 P I V H+L + +++ Y + +G +TP G FVI +K NP G FG+ Sbjct: 56 PYEIHVSLSQHQLTLLHNGSVVKIYPIAVGKMLTQTPTGNFVIVNKAPNPGG----PFGT 111 Query: 391 RGMQLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVEELFAMVPMGTKVQI 442 M LS +Y IHGTN+P SIGK S GCIRM +DVEEL A VP+GT+V+I Sbjct: 112 MWMSLSKLHYGIHGTNDPSSIGKSVSHGCIRMHNKDVEELAATVPIGTRVRI 163 >B1DJN1.1 B1DJN1_9BACL ErfK/YbiS/YcfS/YnhG family protein Length = 112 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 6/109 (5%) Query: 336 IIVDKQNHRLAVTSGNIILRNYAVGLGG--EKTPEGEFVISDKVVNPNGHDNGEFGSRGM 393 IIVD + L + GN+++ +Y VG+G +TP GE+ I +K NP G FG M Sbjct: 6 IIVDLSDRMLHLLDGNVVVNSYPVGIGKMVTQTPSGEYKIINKQENPGG----PFGVLWM 61 Query: 394 QLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVEELFAMVPMGTKVQI 442 LS +Y IHGTN+P SIG+ S GCIRM EDV L +VP+GT+V I Sbjct: 62 GLSKPHYGIHGTNDPSSIGRMVSHGCIRMYNEDVLALSDLVPIGTRVTI 110 >A6CJY9.1 A6CJY9_9BACI Putative uncharacterized protein Length = 165 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Query: 333 PLAIIVDKQNHRLAVTSGNIILRNYAVGLGG--EKTPEGEFVISDKVVNPNGHDNGEFGS 390 PL+I V +L + +++ Y + +G TP G++VI +K NP G FG+ Sbjct: 56 PLSIHVSTSQRKLTLQRNGTVVKTYPIAVGKMLSATPVGQYVIINKAPNPGG----PFGT 111 Query: 391 RGMQLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVEELFAMVPMGTKVQIS 443 M LS +Y IHGTN P SIGK S GCIRM DVEEL +P+GT+V I+ Sbjct: 112 MWMSLSKKHYGIHGTNNPASIGKAVSKGCIRMYNSDVEELARTIPIGTRVVIT 164 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,674,652,742 Number of extensions: 101410815 Number of successful extensions: 166762 Number of sequences better than 1.0e-05: 737 Number of HSP's gapped: 166408 Number of HSP's successfully gapped: 738 Length of query: 477 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 337 Effective length of database: 1,741,754,103 Effective search space: 586971132711 Effective search space used: 586971132711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)