BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0009.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHK5.1 B3KHK5_9BACI RelA/SpoT domain protein 457 e-127 B1DMM0.1 B1DMM0_9BACL RelA/SpoT domain protein 376 e-102 A6TUD0.1 A6TUD0_ALKMQ RelA/SpoT domain protein 315 2e-84 A8MMA9.1 A8MMA9_ALKOO RelA/SpoT domain protein 305 3e-81 B9DWZ2.1 B9DWZ2_CLOK1 Putative uncharacterized protein 288 3e-76 >B3KHK5.1 B3KHK5_9BACI RelA/SpoT domain protein Length = 270 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/270 (82%), Positives = 243/270 (90%) Query: 8 MDVRDWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRL 67 MDVRDWGTFLLPYEQTVEELKVKFKTMRSELKKREEY PIEFVTGRVKR+SSIL+KA+RL Sbjct: 1 MDVRDWGTFLLPYEQTVEELKVKFKTMRSELKKREEYAPIEFVTGRVKRISSILDKAKRL 60 Query: 68 NVKMEDLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSF 127 NV M+ LETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDL VLYEKDYITN+KESGYRSF Sbjct: 61 NVPMDQLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLTVLYEKDYITNFKESGYRSF 120 Query: 128 HMIIKYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEA 187 HMII+YPVQTALGQK VLAEIQIRTLAMNFWATIEHSL+YKYRESLPD++R RLK A EA Sbjct: 121 HMIIEYPVQTALGQKKVLAEIQIRTLAMNFWATIEHSLSYKYRESLPDDIRARLKKAGEA 180 Query: 188 ASILDSEMSSIRDEILEAQKTFEDNSNTTTQLLKAIHQLYFYHLVNEAIESQERFNQIWQ 247 A+ LD+EMSSIR++ILEAQ+ FED+SN TTQ+L AIH+LYF+HLVNEAI Q RFN IWQ Sbjct: 181 ANTLDTEMSSIREDILEAQRQFEDDSNITTQVLNAIHKLYFFHLVNEAIAFQSRFNAIWQ 240 Query: 248 AQDMDAMKELLEHVRGLLSNAKKDSLPDGL 277 A DMD MK LL+ V+ LL+ AKK D L Sbjct: 241 AHDMDEMKVLLDEVKELLAAAKKKVNEDEL 270 >B1DMM0.1 B1DMM0_9BACL RelA/SpoT domain protein Length = 268 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/265 (68%), Positives = 218/265 (82%) Query: 8 MDVRDWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRL 67 MD RDW FL PYEQ VEELKVK KTMR ELK RE Y PIEFVTGRVK++SSILEKA+RL Sbjct: 1 MDGRDWNLFLQPYEQAVEELKVKLKTMRVELKMREAYAPIEFVTGRVKKVSSILEKARRL 60 Query: 68 NVKMEDLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSF 127 +V + LE GIEDIAGIRIMCQFV+DI RVA +IR RKDL+++YEKDYITNYK+SGYRS+ Sbjct: 61 SVPADQLEKGIEDIAGIRIMCQFVDDIHRVAGFIRTRKDLKLVYEKDYITNYKDSGYRSY 120 Query: 128 HMIIKYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEA 187 HMI++YPVQTALGQK VLAEIQIRTLAMNFWATIEHSLNYKY+ESLPDE+R RLK AAEA Sbjct: 121 HMIVEYPVQTALGQKFVLAEIQIRTLAMNFWATIEHSLNYKYKESLPDEVRERLKKAAEA 180 Query: 188 ASILDSEMSSIRDEILEAQKTFEDNSNTTTQLLKAIHQLYFYHLVNEAIESQERFNQIWQ 247 A +LD+EMSSIR EIL+AQ+ FE+ SN + +L +I LYFYH V EA + Q +FN++++ Sbjct: 181 AFLLDTEMSSIRHEILDAQRDFEERSNVVSTVLSSIQDLYFYHRVREAAQFQMKFNELFE 240 Query: 248 AQDMDAMKELLEHVRGLLSNAKKDS 272 +D+ +K+L + + AKK + Sbjct: 241 QEDLYGLKQLSVDIEAAILRAKKGN 265 >A6TUD0.1 A6TUD0_ALKMQ RelA/SpoT domain protein Length = 267 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 156/252 (61%), Positives = 193/252 (76%), Gaps = 2/252 (0%) Query: 12 DWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRLNVKM 71 +W L+PYEQ VEELKVKFK++R+EL+ EY+PIEFVTGRVK++SSILEKA++L+V + Sbjct: 5 EWKRTLIPYEQAVEELKVKFKSIRNELRAMGEYSPIEFVTGRVKKISSILEKAKKLDVSL 64 Query: 72 EDLETGIEDIAGIRIMCQFVEDIRRVAEYIRAR--KDLEVLYEKDYITNYKESGYRSFHM 129 E++ IEDIAGIRIMCQFVEDI V +YIR R KDLE++YEKDYITNYK+SGYRS+H+ Sbjct: 65 EEIHDKIEDIAGIRIMCQFVEDIYTVVDYIRERDGKDLEIVYEKDYITNYKDSGYRSYHV 124 Query: 130 IIKYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEAAS 189 II+YP+QTALG K +LAE+QIRTLAMNFWA IEHSL YKY+ +P + RL+ AA AA Sbjct: 125 IIRYPIQTALGPKKILAELQIRTLAMNFWAIIEHSLKYKYKRQIPGHINDRLEKAAHAAF 184 Query: 190 ILDSEMSSIRDEILEAQKTFEDNSNTTTQLLKAIHQLYFYHLVNEAIESQERFNQIWQAQ 249 LD EMS IR EI +AQK FE SNT + +LK I LY V EA E QERFN++W Sbjct: 185 KLDQEMSEIRHEIRQAQKLFEIKSNTISNILKNIQLLYLVGRVTEATEFQERFNEMWDNG 244 Query: 250 DMDAMKELLEHV 261 D+ +K+ V Sbjct: 245 DVKELKDFAREV 256 >A8MMA9.1 A8MMA9_ALKOO RelA/SpoT domain protein Length = 268 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 149/252 (59%), Positives = 189/252 (75%), Gaps = 2/252 (0%) Query: 12 DWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRLNVKM 71 DW L+PY+ VEELKVKFK +R EL+ EY+PIEFVTGRVK++SSILEKA++L+V + Sbjct: 6 DWKKLLIPYDNAVEELKVKFKGIRRELRSIGEYSPIEFVTGRVKKVSSILEKAEKLDVAI 65 Query: 72 EDLETGIEDIAGIRIMCQFVEDIRRVAEYIRARK--DLEVLYEKDYITNYKESGYRSFHM 129 ED+E GIEDIAGIRIMCQFVEDI V +YIR R DL+++YEKDYI N+K SGYRS+H+ Sbjct: 66 EDVEDGIEDIAGIRIMCQFVEDIYTVVDYIRERDGYDLDIVYEKDYIDNFKPSGYRSYHI 125 Query: 130 IIKYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEAAS 189 +I+YP+QTA+G K +LAEIQIRTLAMNFW TIEHSL YKY+ ++P+ + RL AA+AA Sbjct: 126 VIRYPIQTAMGPKKILAEIQIRTLAMNFWGTIEHSLKYKYKHNIPEHVTERLIKAADAAF 185 Query: 190 ILDSEMSSIRDEILEAQKTFEDNSNTTTQLLKAIHQLYFYHLVNEAIESQERFNQIWQAQ 249 LD EMS IR EI +AQK FE SNT + +L I+ LY + EA QE+F +IW Sbjct: 186 RLDQEMSQIRHEIRQAQKLFEIRSNTVSDILGDIYSLYSAGRIAEATGLQEKFTEIWNKG 245 Query: 250 DMDAMKELLEHV 261 D+ +K + V Sbjct: 246 DISELKSFSKEV 257 >B9DWZ2.1 B9DWZ2_CLOK1 Putative uncharacterized protein Length = 263 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 140/258 (54%), Positives = 188/258 (72%) Query: 8 MDVRDWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRL 67 M + +W TFL+PY+Q VEELKVKF+++R E ++R EY+PIEFVTGRVK +SSILEKA + Sbjct: 1 MAIGEWKTFLIPYDQAVEELKVKFRSIRKEYRRRNEYSPIEFVTGRVKEISSILEKANKF 60 Query: 68 NVKMEDLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSF 127 N+ ++ + IEDIAGIRIMCQFV+DI +V + +R RKD+ ++YEKDYI N KESGYRS+ Sbjct: 61 NIPLDRIRYEIEDIAGIRIMCQFVDDIDKVVKIVRNRKDMNIMYEKDYIDNVKESGYRSY 120 Query: 128 HMIIKYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEA 187 H+IIKYPV A G+ +LAE QIRTLAMNFWATIEHSLNYKY++ +PD ++L+LK AA+A Sbjct: 121 HVIIKYPVNMAEGEMEILAEFQIRTLAMNFWATIEHSLNYKYKQDIPDHIKLKLKNAADA 180 Query: 188 ASILDSEMSSIRDEILEAQKTFEDNSNTTTQLLKAIHQLYFYHLVNEAIESQERFNQIWQ 247 A LD +M I+DEI +AQK FE SN + ++ I L + EA Q + N++ + Sbjct: 181 AFQLDEQMLQIKDEIKDAQKLFEVKSNLVSDIMNNILTLSSMGKLVEATRYQGQLNKLIE 240 Query: 248 AQDMDAMKELLEHVRGLL 265 ++ + LL LL Sbjct: 241 EGEVFELVNLLRATEKLL 258 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,439,474,312 Number of extensions: 53027248 Number of successful extensions: 201631 Number of sequences better than 1.0e-05: 692 Number of HSP's gapped: 202201 Number of HSP's successfully gapped: 692 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)