BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0001.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHI4.1 B3KHI4_9BACI Putative uncharacterized protein 173 9e-42 B1DBM0.1 B1DBM0_9BACL SMC domain protein 133 9e-30 Q8TNC8.1 Q8TNC8_METAC Putative uncharacterized protein 111 3e-23 C1P8K3.1 C1P8K3_BACCO Putative uncharacterized protein 107 8e-22 B5UKA3.1 B5UKA3_BACCE Putative uncharacterized protein 106 9e-22 >B3KHI4.1 B3KHI4_9BACI Putative uncharacterized protein Length = 666 Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 90/176 (51%), Positives = 116/176 (65%), Gaps = 3/176 (1%) Query: 6 LQIGGYGRLHNREMKLDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQERYEPAQG 65 + I G+G + + + +D+ V++LYG NEAGKST L FI AML+G PG+ +P ER EP+ Sbjct: 1 MNIQGFGAVRDMSISIDAPVTVLYGPNEAGKSTVLHFISAMLYGFPGKGSPAERGEPSGE 60 Query: 66 GQHGGMLAARDSEGGQWRIRRYM---TGGETPGRSEKLHITVSHPDGRTEEAGQTEMERR 122 G HGG L D EG W +RRY G G+ E++HI +G E GQ E+E+ Sbjct: 61 GVHGGELRFLDKEGIPWVVRRYKRSREGNAASGKGERVHIHKQADNGLVIELGQQELEQY 120 Query: 123 LLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEIMRAERRLQQ 178 LGG+SR MFRQLFA+SL ELQE+ L S EMS YLFHAG+GGG I+ AER+L Q Sbjct: 121 ALGGVSRDMFRQLFAISLSELQEIRGLHSAEMSGYLFHAGIGGGANILEAERKLSQ 176 >B1DBM0.1 B1DBM0_9BACL SMC domain protein Length = 1071 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Query: 1 VKIEELQIGGYGRLHNREMKLDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQERY 60 +K+ E++I G+G+L +LD +LYG NEAGKST FIR +LFG R P ER Sbjct: 1 MKLLEVRIDGFGQLQGFNCRLDGPSVILYGMNEAGKSTLFGFIRTILFGFARRNQPAERQ 60 Query: 61 EPAQGGQHGGMLAARDSEGGQWRIRRYMTGGETPGRSEKLHITVSHPD---GRTEEAGQT 117 EP GG HGG L +D+EG RY GR + I+++ D G Q Sbjct: 61 EPVNGGTHGGQLVFQDAEGHTCIAERYAHAN--GGRLKLRRISLTEHDFQPGEESWPTQE 118 Query: 118 EMERRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEIMRAERRLQ 177 E E+R LGG + +FR+L+A++L ELQ++GAL EE+ YL+HAG G I AE++LQ Sbjct: 119 EWEQRYLGGTNEQLFRELYAITLTELQQVGALSHEELGRYLYHAGWENGKAIAAAEKKLQ 178 >Q8TNC8.1 Q8TNC8_METAC Putative uncharacterized protein Length = 1300 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 94/171 (54%), Gaps = 16/171 (9%) Query: 1 VKIEELQIGGYGRLHNREMK-LDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPG-RVNPQE 58 +KI+ + I G+G+ ++ L SG+ +L G NEAGKST FIR M FGIP R N Sbjct: 10 MKIDAIHIDGFGKFSRLSVENLPSGLVILTGANEAGKSTLFTFIRRMFFGIPNTRCN--- 66 Query: 59 RYEPAQGGQHGGMLAARDSEGGQWRIRRYMTGGETPGRSEKLHITVSHPDGRTEEAGQTE 118 Y P +GGQHGG L DSEG +W I R S K + V PDG T +TE Sbjct: 67 LYPPLEGGQHGGRLVVIDSEGERWVIER--------NTSRKDDVKVVLPDGNT--GSKTE 116 Query: 119 MERRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEI 169 + +LLG R++F ++A L+ELQ L + ++S L+ AG G G I Sbjct: 117 L-LKLLGHADRNIFENIYAFGLEELQSFETLNDQSINSKLYSAGTGVGVSI 166 >C1P8K3.1 C1P8K3_BACCO Putative uncharacterized protein Length = 995 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 10/178 (5%) Query: 1 VKIEELQIGGYGRLHNREMKLDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQERY 60 +KI E+ I G+GRL + M+ S + ++YG NEAGKST + FI A+LFG P R + Y Sbjct: 1 MKIREVHIYGFGRLVDFHMENLSDLQVIYGENEAGKSTFMAFIEAVLFGFPSRQQNGQHY 60 Query: 61 EPAQGGQHGGMLAARDSEGGQWRIRRYMTGGETPGRSEKLHITVSHPDGRTEEAGQTEME 120 EP +GG L + G+ + R G G ++V+ DGRT G E+ Sbjct: 61 EPKFSPVYGGRLVLETEKDGKITVER--IKGRAAG-----EVSVTFADGRT---GGEEVL 110 Query: 121 RRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEIMRAERRLQQ 178 ++L G++R MF+ +++ +L LQE+ L ++ S +LF AG G ++ AER L++ Sbjct: 111 AQVLNGLNRQMFQSIYSFNLQSLQEIRKLTGDDFSRFLFAAGTIGTDALLSAERELEK 168 >B5UKA3.1 B5UKA3_BACCE Putative uncharacterized protein Length = 974 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 17/180 (9%) Query: 1 VKIEELQIGGYGRLHNREMKLDSGVSLLYGRNEAGKSTTLQFIRAMLFGIPGRVNPQERY 60 ++IE+L I GYG+L N EM L S +++LYG NEAGKST F++++LFG P R Q RY Sbjct: 1 MRIEKLHIYGYGKLENVEMDL-SLLTVLYGENEAGKSTIRSFMKSILFGFPTR--GQRRY 57 Query: 61 EPAQGGQHGGMLAARDSEGGQWRIRRY--MTGGETPGRSEKLHITVSHPDGRTEEAGQTE 118 EP +GG++GG + + + G+ +I R GE +TV DG+T G E Sbjct: 58 EPKEGGKYGGAITVQTEQYGRLKIERLPKTAAGE---------VTVYFEDGKT---GGEE 105 Query: 119 MERRLLGGISRSMFRQLFAVSLDELQELGALQSEEMSSYLFHAGMGGGGEIMRAERRLQQ 178 + +L G++ S+F +F+ + LQ + L ++ +YLF A G +++ +++L++ Sbjct: 106 ILNDILSGMNESLFESVFSFDMHGLQNIHQLGEADIGNYLFSASAVGSDALLQLDKKLEK 165 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,245,311,862 Number of extensions: 52752404 Number of successful extensions: 138818 Number of sequences better than 1.0e-05: 225 Number of HSP's gapped: 138630 Number of HSP's successfully gapped: 225 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)