BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0344.0003.p (288 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4G3Y4.1 C4G3Y4_ABIDE Putative uncharacterized protein 263 2e-68 B8I509.1 B8I509_CLOCE Binding-protein-dependent transport system... 221 8e-56 B1DFW1.1 B1DFW1_9BACL Binding-protein-dependent transport system... 211 5e-53 C0CRH1.1 C0CRH1_9FIRM Putative uncharacterized protein 209 2e-52 B1DCZ6.1 B1DCZ6_9BACL Binding-protein-dependent transport system... 199 2e-49 >C4G3Y4.1 C4G3Y4_ABIDE Putative uncharacterized protein Length = 279 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 120/263 (45%), Positives = 174/263 (66%) Query: 26 LWLYFAVSIYPLFWMISYSLKNNDEIFVTNPFGLPTHFRFENYINAWTQFNIPRYFWNSF 85 L LY +S+YPL WMI S KNN+EIF TNPFG+PT FRF NY+ AW ++++ +YF NS Sbjct: 17 LGLYTVLSVYPLLWMIFNSFKNNEEIFSTNPFGIPTEFRFINYVKAWFEYDVVQYFSNSV 76 Query: 86 VVSIISTVXXXXXXXXXXXXXXRMQWRFRSAVRTYMLVGMFMPLQVIMIPLALLVRDFHL 145 V++ + RM W+ AV+TY+ VGMF+P Q+I+IPL +LV+D H+ Sbjct: 77 FVTVATVFLTVCLAMMFAYAIARMDWKLSGAVKTYVSVGMFIPAQIILIPLVILVKDLHV 136 Query: 146 TNTYGALIIPYIAIGLPFSTMVFYGFLVSIPREIEEAACIDGASIYRLFLGVXXXXXXXX 205 +T ++I+PY+A PF +FYG+L +P E+EEAA +DGASIY +FL + Sbjct: 137 NDTLLSVILPYVAFQTPFIITIFYGYLRQLPVEMEEAAAMDGASIYSIFLKIILPLVKPA 196 Query: 206 XXXXXXFQFLNNWNEFTLAYILISDENMKTLPLGLLFFQGSYSTDWGAMGAVMTIASLPM 265 F L +WNEF +A ++I+ + + TLP+GL+ FQG +STDWGAM A + I+S+P Sbjct: 197 IVSCALFTMLFSWNEFMIALVVIAKKELNTLPIGLVKFQGQFSTDWGAMAASLVISSIPT 256 Query: 266 VLVYLLLSDQVERAMTVGSAVKG 288 +L+YL S Q+E+A+ GS++KG Sbjct: 257 ILLYLAFSQQIEKAVAAGSSIKG 279 >B8I509.1 B8I509_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 284 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 105/273 (38%), Positives = 166/273 (60%), Gaps = 1/273 (0%) Query: 16 SIGQFLLQIPLWLYFAVSIYPLFWMISYSLKNNDEIFVTNPFGLPTHFRFENYINAWTQF 75 SI + L+ I L + + ++PL+WM S+SLK+N EIF NP GLP + + NY NA TQ Sbjct: 13 SISKILMYIALLIVAVIQLFPLYWMFSFSLKDNSEIFGGNPIGLPGKWLWSNYSNALTQG 72 Query: 76 NIPRYFWNSFVVSIISTVXXXXXXXXXXXXXXRMQWRFRSAVRTYMLVGMFMPLQVIMIP 135 N+ RYF NS +V+ ++ + RM +R R + ++ ++G+ +PL ++P Sbjct: 73 NVGRYFTNSVIVTTVTILLTSIIAVMASYALTRMVFRIRKPLNSFFILGLTVPLHSALLP 132 Query: 136 LALLVRDFHLTNTYGALIIPYIAIGLPFSTMVFYGFLVSIPREIEEAACIDGASIYRLFL 195 + +++R + N+Y ALI PY A +P + ++F GF+ SIPRE+EEAACIDG SIY++F Sbjct: 133 IFIMLRSLKMVNSYWALIAPYTAFAIPMAILIFSGFMGSIPREMEEAACIDGCSIYKIFF 192 Query: 196 GVXXXXXXXXXXXXXXFQFLNNWNEFTLAYILISDENMKTLPLGLLFFQGSYSTDWGAMG 255 + F FL WNE A + ISD KTL +G+ G Y+T+WG +G Sbjct: 193 TIILPLMRPAIATVTIFTFLQAWNELMFAVVFISDAKYKTLTVGIQSLAGQYTTEWGPIG 252 Query: 256 AVMTIASLPMVLVYLLLSDQVERAMTVGSAVKG 288 A + +A++P +++Y ++S +V+ ++ VG AVKG Sbjct: 253 AGLMVATIPTLIIYAIMSKKVQDSLVVG-AVKG 284 >B1DFW1.1 B1DFW1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 188 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 98/181 (54%), Positives = 134/181 (74%) Query: 108 RMQWRFRSAVRTYMLVGMFMPLQVIMIPLALLVRDFHLTNTYGALIIPYIAIGLPFSTMV 167 RM W+ RS +Y+L+G+F+P QVI+IPLA+ VRD ++NTY LI+PY+A L FS+++ Sbjct: 8 RMTWKLRSFANSYILIGLFIPTQVILIPLAVFVRDMGISNTYLGLILPYVAFNLAFSSLI 67 Query: 168 FYGFLVSIPREIEEAACIDGASIYRLFLGVXXXXXXXXXXXXXXFQFLNNWNEFTLAYIL 227 FY F +IP EIEE+A +DGASIYR FL + F F+N WNEFTL+ IL Sbjct: 68 FYSFFRTIPMEIEESAFMDGASIYRTFLQIMLPLVQPAVATVTIFSFMNVWNEFTLSLIL 127 Query: 228 ISDENMKTLPLGLLFFQGSYSTDWGAMGAVMTIASLPMVLVYLLLSDQVERAMTVGSAVK 287 + E++KTLP+GLL F G Y+T+WG MGA M ++S+P+++VYL+L DQVE+A+TVGSAVK Sbjct: 128 ATKESIKTLPIGLLSFTGQYATNWGPMGAAMVLSSIPVIVVYLILGDQVEKALTVGSAVK 187 Query: 288 G 288 G Sbjct: 188 G 188 >C0CRH1.1 C0CRH1_9FIRM Putative uncharacterized protein Length = 276 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 110/274 (40%), Positives = 160/274 (58%), Gaps = 1/274 (0%) Query: 15 RSIGQFLLQIPLWLYFAVSIYPLFWMISYSLKNNDEIFVTNPFGLPTHFRFENYINAWTQ 74 R G L I L L+ V IYPLFWM +SLKNN+EIF N GLP H+ + NY AWT Sbjct: 4 RKTGSVLTYIFLVLFTVVQIYPLFWMFCFSLKNNNEIFGENVAGLPQHWLWSNYAEAWTN 63 Query: 75 FNIPRYFWNSFVVSIISTVXXXXXXXXXXXXXXRMQWRFRSAVRTYMLVGMFMPLQVIMI 134 N+ RYF+N+ VV+ + V R++W+F T L+G+ +P+ ++ Sbjct: 64 GNVGRYFFNTVVVTFATVVFTVVFSAMAAYAITRLKWKFSRTALTLFLMGLMIPIHCALL 123 Query: 135 PLALLVRDFHLTNTYGALIIPYIAIGLPFSTMVFYGFLVSIPREIEEAACIDGASIYRLF 194 PL L +L NTY LI+PY A LP + VF G++ IPRE+EE+A +DG +IY+ F Sbjct: 124 PLFLTYVKLNLLNTYFCLILPYTAFALPLAIYVFAGYMEGIPREMEESALLDGCNIYKCF 183 Query: 195 LGVXXXXXXXXXXXXXXFQFLNNWNEFTLAYILISDENMKTLPLGLLFFQGSYSTDWGAM 254 L + F+N WNEF LA I + +MKTL +G+ G ++T+WG + Sbjct: 184 LHIILPMLKPVVATVTILTFINTWNEFMLASIFTTKTSMKTLTVGVQEMVGQFTTNWGPV 243 Query: 255 GAVMTIASLPMVLVYLLLSDQVERAMTVGSAVKG 288 GA + +ASLP +++Y+L+S QV+++ G A+KG Sbjct: 244 GASLVLASLPTLVIYILMSKQVQKSFISG-AMKG 276 >B1DCZ6.1 B1DCZ6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 157/281 (55%), Gaps = 1/281 (0%) Query: 8 HMSPKTFRSIGQFLLQIPLWLYFAVSIYPLFWMISYSLKNNDEIFVTNPFGLPTHFRFEN 67 + P+ SIG+ L+ + L +YPL W+ YSLK N+EI F LP ++ N Sbjct: 12 RIKPQRKFSIGKILMWVLLSALIVTQLYPLLWLAIYSLKTNEEILSGQFFALPHALQWGN 71 Query: 68 YINAWTQFNIPRYFWNSFVVSIISTVXXXXXXXXXXXXXXRMQWRFRSAVRTYMLVGMFM 127 Y A N +Y NS V++I+ V R +W++ AV L+GM + Sbjct: 72 YSAAMESGNYVKYLLNSLKVTLITMVGVLFLSSLVSFAISRFKWKYGQAVMVVFLIGMMI 131 Query: 128 PLQVIMIPLALLVRDFHLTNTYGALIIPYIAIGLPFSTMVFYGFLVSIPREIEEAACIDG 187 P+Q ++PL ++ ++ H+ NT+ +LI+PYIA P + + GF+ SIP EIEE+A +DG Sbjct: 132 PMQATLLPLMIIFKNMHILNTHWSLILPYIAFQTPIAVFILSGFMKSIPNEIEESAIVDG 191 Query: 188 ASIYRLFLGVXXXXXXXXXXXXXXFQFLNNWNEFTLAYILISDENMKTLPLGLLFFQGSY 247 A ++R+F + F+N WNE+ LA IS E +KTLP G+ F Y Sbjct: 192 AGVFRIFWNIILPVSVPPMMTVCILTFINIWNEYILAATFISSERLKTLPFGVYSFVSQY 251 Query: 248 STDWGAMGAVMTIASLPMVLVYLLLSDQVERAMTVGSAVKG 288 S ++GA+GA + + +LP++++Y LL+D++ + M G AVKG Sbjct: 252 SVNYGAIGAFLVLGALPVIIIYFLLADKITKGMVAG-AVKG 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,517,072,256 Number of extensions: 56609524 Number of successful extensions: 184132 Number of sequences better than 1.0e-05: 5673 Number of HSP's gapped: 174937 Number of HSP's successfully gapped: 5674 Length of query: 288 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 154 Effective length of database: 1,798,280,193 Effective search space: 276935149722 Effective search space used: 276935149722 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)