BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0344.0002.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DFV9.1 B1DFV9_9BACL Binding-protein-dependent transport system... 281 6e-74 C4G3Y5.1 C4G3Y5_ABIDE Putative uncharacterized protein 237 8e-61 B7Y536.1 B7Y536_RUMHA Putative uncharacterized protein 173 1e-41 A5ZA59.1 A5ZA59_9FIRM Putative uncharacterized protein 160 1e-37 C4ZBZ8.1 C4ZBZ8_9FIRM ABC-type sugar transport system, permease ... 159 3e-37 >B1DFV9.1 B1DFV9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 281 bits (718), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 131/270 (48%), Positives = 180/270 (66%), Gaps = 1/270 (0%) Query: 22 YSVILIYPVLQTVVRSFYDWDGLSTAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAGF 81 ++VI++YP++QT+ S +DWDG+ A F G+ N+ L +D + SLKNG IFA++L F Sbjct: 22 FTVIVMYPLVQTLFMSLFDWDGVLKAKFVGLNNFNTLIHDDIFYVSLKNGFIFAVILTVF 81 Query: 82 QIGLGTVLALVCANPRTRGRKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLFELL 141 Q+ L TV AL+ NPR +G+ +L+ AYFIPVVLSVTVVCQLWI+MY+P G++NKLF+ L Sbjct: 82 QLVLATVFALILLNPRIKGKNMLRRAYFIPVVLSVTVVCQLWISMYNPQYGMINKLFQAL 141 Query: 142 NIPYRQNWLSS-PTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGKWR 200 + Y Q+WLS+ SIIA+ V AWQ MGYQF+L+YA K++PE +FEAA IDG ++ Sbjct: 142 GLSYSQDWLSNLGLSSIIAVTMVAAWQGMGYQFALIYAAAKSLPEHFFEAAKIDGATTFQ 201 Query: 201 AHWHVTLPLMRETYKFCFTIAITSGIGAFVQMLIMTNGGPGTTNYTMTFMIYRYAFMESN 260 H +T+PL+ ETY+ C + +G+ AF M IMT GGPGT+ YT+T+M+YR AF Sbjct: 202 IHRKITIPLLAETYRICLIFTLNAGLNAFAYMQIMTKGGPGTSTYTLTYMMYRSAFKLDQ 261 Query: 261 YGYACXXXXXXXXXXXXXXXXXNKVFDRGQ 290 YGY C NK R + Sbjct: 262 YGYGCAVAVVVVLQCLFVTFLINKFVARER 291 >C4G3Y5.1 C4G3Y5_ABIDE Putative uncharacterized protein Length = 297 Score = 237 bits (605), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 117/269 (43%), Positives = 175/269 (65%), Gaps = 4/269 (1%) Query: 1 MNKYLGNKSXXXXXXXXXXXXYSVILIYPVLQTVVRSFYDWDGLSTAAFSGIANYRELF- 59 M K GNK Y+V++ YP++QT ++S Y+WDG++ F G+ +Y +LF Sbjct: 1 MKKVTGNKVAIAIFVLPTLLLYTVLVFYPIIQTAIKSLYEWDGINIGEFVGLKHYIKLFT 60 Query: 60 NDPLLSTSLKNGLIFALVLAGFQIGLGTVLALVCANPRTRGRKLLKTAYFIPVVLSVTVV 119 D SL NGL+F LV +QIGLG+V+A A+ + RGRK ++AYFIP LS+ +V Sbjct: 61 RDKTFKVSLINGLLFPLVTVVYQIGLGSVIAFTLASKKIRGRKFFRSAYFIPSTLSIVIV 120 Query: 120 CQLWIAMY--DPTN-GLVNKLFELLNIPYRQNWLSSPTQSIIAIAFVNAWQFMGYQFSLL 176 C+LW+A+ D +N GL+NKLFELL + YRQNWL+ +I+ +AFV AWQ +G L+ Sbjct: 121 CKLWLAILASDASNMGLLNKLFELLGLSYRQNWLAQGIPAILIMAFVAAWQGIGNTILLI 180 Query: 177 YAGVKAVPEDYFEAATIDGCGKWRAHWHVTLPLMRETYKFCFTIAITSGIGAFVQMLIMT 236 Y +KA+P+ Y+EAA DG +A+ V +P++ ETYK + +T G+ AF + IMT Sbjct: 181 YTAIKAIPDQYYEAAVTDGARPIQAYIKVIIPMLAETYKLLLILILTGGLRAFEHIFIMT 240 Query: 237 NGGPGTTNYTMTFMIYRYAFMESNYGYAC 265 +GGPG T+++M+Y+ A++ +N+GYAC Sbjct: 241 SGGPGNRTSTLSYMMYKSAYVMNNFGYAC 269 >B7Y536.1 B7Y536_RUMHA Putative uncharacterized protein Length = 292 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 143/245 (58%), Gaps = 6/245 (2%) Query: 22 YSVILIYPVLQTVVRSFYDWDGLS-TAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAG 80 +S+ LI P+ SF++W+ LS T F G+ NY+E+F L S+ N LIF++V+ Sbjct: 28 FSIFLIVPIGIAFAGSFHEWNPLSGTYNFLGLENYKEVFTSSLFGKSMLNTLIFSVVVII 87 Query: 81 FQIGLGTVLALVCANPRTRGRKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLFEL 140 F++GLG +A +P + + + Y++PVV + V +W MY+P G +N++F L Sbjct: 88 FRVGLGLGIAYAIYSPLVKHKSFFRAIYYMPVVTPMVAVAFVWKFMYNPQIGTINQIFGL 147 Query: 141 LNIPYRQNWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGKWR 200 NWL +P +++A+ + W+ GY + AG+ ++P D EAA +DG W+ Sbjct: 148 -----DVNWLMNPKIALLAVIIMTIWKDFGYAVVMYMAGLYSLPSDALEAAKVDGANGWQ 202 Query: 201 AHWHVTLPLMRETYKFCFTIAITSGIGAFVQMLIMTNGGPGTTNYTMTFMIYRYAFMESN 260 ++TLPL++ F +I S I A+VQ+LIMT GGPGT Y +++IY AF++ N Sbjct: 203 TFRYITLPLLKPMTLFVVITSIISYIQAYVQILIMTEGGPGTATYLASYIIYDEAFVKYN 262 Query: 261 YGYAC 265 +GYA Sbjct: 263 FGYAS 267 >A5ZA59.1 A5ZA59_9FIRM Putative uncharacterized protein Length = 294 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 4/292 (1%) Query: 1 MNKYLGNKSXXXXXXXXXXXXYSVILIYPVLQTVVRSFYDWDGLSTAAFSGIANYRELF- 59 M K LGNK + + P++ + V SF++++G+ + F GI NY ELF Sbjct: 1 MEKMLGNKKYILIFILPALLLFLGFTLIPLITSGVYSFFEYNGIGSKTFIGIKNYIELFT 60 Query: 60 NDPLLSTSLKNGLIFALVLAGFQIGLGTVLALVCANPRTRGRKLLKTAYFIPVVLSVTVV 119 +D ++KN LI Q+ + +LAL+ + +G +T YFIPVV+S V+ Sbjct: 61 SDRYFPQAVKNSLILVAASLFIQLPISLILALILSK-GVKGDNFFRTIYFIPVVISSMVI 119 Query: 120 CQLWIAMYDPTNGLVNKLFELLNIPYRQNWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAG 179 QLW+ M++ G++N + Y +WL+ + + + + WQ++GY + YAG Sbjct: 120 GQLWLKMFNSDYGVINTVIRYFVPEYEHSWLTK--NAFMTVLIPSVWQYIGYHMIIFYAG 177 Query: 180 VKAVPEDYFEAATIDGCGKWRAHWHVTLPLMRETYKFCFTIAITSGIGAFVQMLIMTNGG 239 +K++ DY+EAA IDG W+ + +TLPL+ K C AIT + AF + +MT GG Sbjct: 178 IKSISTDYYEAAQIDGASTWQVYRKITLPLLVPVIKTCVIFAITGSLRAFDLVYVMTGGG 237 Query: 240 PGTTNYTMTFMIYRYAFMESNYGYACXXXXXXXXXXXXXXXXXNKVFDRGQN 291 P + ++Y F + YGY N++F + + Sbjct: 238 PNHISEVPATLMYNNLFRKGLYGYGSAQAFFIVIECLIFTFIVNRLFKKAEQ 289 >C4ZBZ8.1 C4ZBZ8_9FIRM ABC-type sugar transport system, permease component Length = 292 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 143/245 (58%), Gaps = 6/245 (2%) Query: 22 YSVILIYPVLQTVVRSFYDWDGLS-TAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAG 80 +++ LI P+ SF++W+ LS T F G+ NY+++F L S+ N +IF++V+ Sbjct: 28 FTIFLIIPIGIAFAGSFHEWNPLSGTYKFLGLENYKQVFTSKLFGKSMFNTVIFSVVVIV 87 Query: 81 FQIGLGTVLALVCANPRTRGRKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLFEL 140 F++GLG +A + + + + Y++PVV + V +W MY+P G +NK+F L Sbjct: 88 FRVGLGLGIAYAIYSTLIKHKSFFRAVYYMPVVTPMVAVAFVWKFMYNPQIGTINKIFGL 147 Query: 141 LNIPYRQNWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGKWR 200 NWL +P ++IA+ + W+ GY + AG+ ++P D EAA +DG W+ Sbjct: 148 -----DINWLMNPKTALIAVMIMTIWKDFGYAVVMYMAGLYSLPADVMEAAQVDGASGWQ 202 Query: 201 AHWHVTLPLMRETYKFCFTIAITSGIGAFVQMLIMTNGGPGTTNYTMTFMIYRYAFMESN 260 ++TLPL++ F +I S I A+VQ+LIMT GGPGT+ Y +++IY AF++ N Sbjct: 203 KFRYITLPLLKPMTLFVVITSIISYIQAYVQILIMTEGGPGTSTYLASYIIYDEAFVKYN 262 Query: 261 YGYAC 265 +GYA Sbjct: 263 FGYAS 267 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,583,761,098 Number of extensions: 61887795 Number of successful extensions: 201504 Number of sequences better than 1.0e-05: 5744 Number of HSP's gapped: 194162 Number of HSP's successfully gapped: 5749 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)