BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0057.p (303 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B1G1.1 Q2B1G1_9BACI Probable ABC transporter, ATP-binding prot... 304 6e-81 A4IPR1.1 A4IPR1_GEOTN ABC transporter ATP-binding protein 291 4e-77 B4BNU0.1 B4BNU0_9BACI ABC transporter-related protein 291 4e-77 Q6HMF7.1 Q6HMF7_BACHK Probable ABC transporter, ATP-binding prot... 288 5e-76 A0RCQ0.1 A0RCQ0_BACAH ABC transporter, ATP-binding protein 288 5e-76 >Q2B1G1.1 Q2B1G1_9BACI Probable ABC transporter, ATP-binding protein; probable MrsF protein Length = 303 Score = 304 bits (779), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 212/303 (69%) Query: 1 MPQLIVETKGLTRRFGEQVSVNEVNLEVPEGKIYGFLGPNGAGKTTTIKMLLGLLRADAG 60 M +LI+ET GLT++FG++ +V V+L + +G+IYGFLGPNGAGKTTTI+MLLGL R G Sbjct: 1 MSELILETNGLTKKFGKRSAVENVDLRLAKGEIYGFLGPNGAGKTTTIRMLLGLARPTGG 60 Query: 61 TIRMFSQEMPENSLDILRKVGSLVENPSYYGHLTGYKNLKILSTLLKLPDRRIGEVLEIV 120 +I +F +++ + L ILRKVGSLVE PSYYGHLT +NL+ L +L++P RI EVL IV Sbjct: 61 SIHIFGRDLKKEKLQILRKVGSLVEYPSYYGHLTAIENLEALRRILEVPKSRIDEVLAIV 120 Query: 121 RLTSSADRKVSGYSLGMKQRLGIAAALLRGPQLLILDEPTNGLDPAGIQEIRHLMLSLAH 180 RL+ A R V G+SLGMKQRLGIAAALL P+LLILDEPTNGLDP+GI EIR L+ S+ Sbjct: 121 RLSKEAKRPVKGFSLGMKQRLGIAAALLANPELLILDEPTNGLDPSGILEIRELIKSMPA 180 Query: 181 DQGMTILLSSHLLSEVDTIADEIGIISSGRLVYQGALELLERRRGKVLEFAVERPEEALR 240 GMTIL+SSHLLSE+D +A ++GIIS G +++Q ++ +L ++ + V E+A R Sbjct: 181 QHGMTILVSSHLLSEIDQMATQVGIISKGSMIFQDSIHVLRQKANSQIAITVNETEKAWR 240 Query: 241 TLLLQGFTVERKGNTLSVAAENASMTQAELFKLLGPYGIMNAREHSKSLEELFMELTGKG 300 LL G E+K L + + + A + + +E K+LE++F+ELTG+G Sbjct: 241 ALLSNGIQAEKKREHLLLDGTDTQVAAAVETLVRHDVSVYRVQEQRKTLEDIFLELTGEG 300 Query: 301 VSL 303 SL Sbjct: 301 GSL 303 >A4IPR1.1 A4IPR1_GEOTN ABC transporter ATP-binding protein Length = 303 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 214/299 (71%), Gaps = 1/299 (0%) Query: 3 QLIVETKGLTRRFGEQVSVNEVNLEVPEGKIYGFLGPNGAGKTTTIKMLLGLLRADAGTI 62 + IVET LT+RFG++++VN +NL++P G++YGFLGPNGAGK+TT++MLLGL+R AG+I Sbjct: 2 EYIVETHHLTKRFGKEIAVNALNLKIPRGEVYGFLGPNGAGKSTTLRMLLGLMRPTAGSI 61 Query: 63 RMFSQEMPENSLDILRKVGSLVENPSYYGHLTGYKNLKILSTLLKLPDRRIGEVLEIVRL 122 R+F +++ + + ILR VGSLVE+PSYY HLT Y+NL+ + +L P +I EVL++VRL Sbjct: 62 RIFGKDLKKERISILRNVGSLVESPSYYSHLTAYENLEAMRKILGSPKEKIDEVLDLVRL 121 Query: 123 TSSADRKVSGYSLGMKQRLGIAAALLRGPQLLILDEPTNGLDPAGIQEIRHLMLSLAHDQ 182 +++AD+KV G+SLGMKQRLGIA ALL P+LLILDEPTNGLDP+GI E+R+L+ L ++ Sbjct: 122 SNAADKKVKGFSLGMKQRLGIAMALLNDPKLLILDEPTNGLDPSGIIEMRNLIKRLPKEK 181 Query: 183 GMTILLSSHLLSEVDTIADEIGIISSGRLVYQGALELLERRRGKVLEFAVERPEEALRTL 242 +T+L+SSHLLSE+D +A +G+IS G+L++Q +++ + + + V A R+L Sbjct: 182 DITVLISSHLLSEIDQVATYVGVISKGKLIFQDSIKAMRNKAQLKIRLKVSDANNAYRSL 241 Query: 243 LLQGFTVERKGNTLSVAAENASMTQAELFKLLGP-YGIMNAREHSKSLEELFMELTGKG 300 L +G + + + + ++ A + L+ Y + E +SLE++F+++T G Sbjct: 242 LAKGIKTHYQDHIIYLYEQSDEAVAAVVETLVDEGYSVYRVEEEHQSLEDIFLKMTAGG 300 >B4BNU0.1 B4BNU0_9BACI ABC transporter-related protein Length = 303 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 214/299 (71%), Gaps = 1/299 (0%) Query: 3 QLIVETKGLTRRFGEQVSVNEVNLEVPEGKIYGFLGPNGAGKTTTIKMLLGLLRADAGTI 62 + IVET LT+RFG++++VN +NL++P G++YGFLGPNGAGK+TT++MLLGL+R AG+I Sbjct: 2 EYIVETHHLTKRFGKEIAVNALNLKIPRGEVYGFLGPNGAGKSTTLRMLLGLMRPTAGSI 61 Query: 63 RMFSQEMPENSLDILRKVGSLVENPSYYGHLTGYKNLKILSTLLKLPDRRIGEVLEIVRL 122 R+F +++ + + ILR VGSLVE+PSYY HLT Y+NL+ + +L P +I EVL++VRL Sbjct: 62 RIFGKDLKKERISILRNVGSLVESPSYYSHLTAYENLEAMRKILGSPKEKIDEVLDLVRL 121 Query: 123 TSSADRKVSGYSLGMKQRLGIAAALLRGPQLLILDEPTNGLDPAGIQEIRHLMLSLAHDQ 182 +++AD+KV G+SLGMKQRLGIA ALL P+LLILDEPTNGLDP+GI E+R+L+ L ++ Sbjct: 122 SNAADKKVKGFSLGMKQRLGIAMALLNDPKLLILDEPTNGLDPSGIIEMRNLIKRLPKEK 181 Query: 183 GMTILLSSHLLSEVDTIADEIGIISSGRLVYQGALELLERRRGKVLEFAVERPEEALRTL 242 +T+L+SSHLLSE+D +A +G+IS G+L++Q +++ + + + V A R+L Sbjct: 182 DITVLISSHLLSEIDQVATYVGVISKGKLIFQDSIKAMRNKAQLKIRLKVSDANNAYRSL 241 Query: 243 LLQGFTVERKGNTLSVAAENASMTQAELFKLLGP-YGIMNAREHSKSLEELFMELTGKG 300 L +G + + + + ++ A + L+ Y + E +SLE++F+++T G Sbjct: 242 LAKGIKTHYQDHIIYLYEQSDEAVAAVVETLVDEGYSVYRVEEEHQSLEDIFLKMTAGG 300 >Q6HMF7.1 Q6HMF7_BACHK Probable ABC transporter, ATP-binding protein; probable MrsF protein Length = 307 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 149/302 (49%), Positives = 210/302 (69%), Gaps = 3/302 (0%) Query: 1 MPQLIVETKGLTRRFGEQVSVNEVNLEVPEGKIYGFLGPNGAGKTTTIKMLLGLLRADAG 60 M IVET+GLT+ +G SVN++ ++V +G+IYGFLGPNGAGKTTTI+MLLGL++ G Sbjct: 4 MGTYIVETEGLTKTYGAVNSVNQLQMQVGKGEIYGFLGPNGAGKTTTIRMLLGLIKPTTG 63 Query: 61 TIRMFSQEMPENSLDILRKVGSLVENPSYYGHLTGYKNLKILSTLLKLPDRRIGEVLEIV 120 I++F+Q++ N +DILR+VGSLVE+PSYYGHLTGY+NL+++ +L++P + I EVL IV Sbjct: 64 NIKIFNQDLKTNRIDILREVGSLVESPSYYGHLTGYENLEVIRQMLQVPKKNIDEVLRIV 123 Query: 121 RLTSSADRKVSGYSLGMKQRLGIAAALLRGPQLLILDEPTNGLDPAGIQEIRHLMLSLAH 180 RL ++ V YSLGMKQRLGIA ALL P+LLILDEPTNGLDPAGIQEIR L+ L Sbjct: 124 RLEKQKNKLVKQYSLGMKQRLGIAMALLGNPKLLILDEPTNGLDPAGIQEIRELIKQLPR 183 Query: 181 DQGMTILLSSHLLSEVDTIADEIGIISSGRLVYQGALELLERRRGKVLEFAVERPEEALR 240 MT+++SSHLL+E+D IA ++GII+SG+L++Q +E+L ++ ++ V +A + Sbjct: 184 QYDMTVVISSHLLNEMDQIATQVGIINSGQLIFQDKIEVLRKKSQASMKIRVNDVVKAHQ 243 Query: 241 TLLLQGFTVERKGNTLSVAAENASMTQAELFKLLGPYG--IMNAREHSKSLEELFMELTG 298 L + GN L V + + + LL + + +E +LEE+F+ LT Sbjct: 244 ILEQHHIHLSIDGNCL-VTQQQEDYFISHINDLLVQHNLSVYRIQEEKHTLEEIFLSLTE 302 Query: 299 KG 300 KG Sbjct: 303 KG 304 >A0RCQ0.1 A0RCQ0_BACAH ABC transporter, ATP-binding protein Length = 311 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 156/302 (51%), Positives = 210/302 (69%), Gaps = 5/302 (1%) Query: 5 IVETKGLTRRFGEQVSVNEVNLEVPEGKIYGFLGPNGAGKTTTIKMLLGLLRADAGTIRM 64 IV+T+ L++ +G VN+V+L V EG+IYGFLGPNGAGKTTT+KMLLGL++A GTI++ Sbjct: 12 IVQTQNLSKTYGAINCVNKVDLHVQEGEIYGFLGPNGAGKTTTLKMLLGLIKASEGTIKI 71 Query: 65 FSQEMPENSLDILRKVGSLVENPSYYGHLTGYKNLKILSTLLKLPDRRIGEVLEIVRLTS 124 F + + +N IL++ GSL+E+PSYYGHLTG +N+K++ L +PD+ I EVL IVRL + Sbjct: 72 FGESLDKNRASILQRTGSLIESPSYYGHLTGLENMKVMQRLRNVPDKNIDEVLRIVRLEN 131 Query: 125 SADRKVSGYSLGMKQRLGIAAALLRGPQLLILDEPTNGLDPAGIQEIRHLMLSLAHDQGM 184 D+K YSLGMKQRLGIA ALL P+LLILDEPTNGLDPAGI EIR L+ SL G+ Sbjct: 132 QKDKKAEQYSLGMKQRLGIAMALLAFPKLLILDEPTNGLDPAGIGEIRELIKSLPERYGI 191 Query: 185 TILLSSHLLSEVDTIADEIGIISSGRLVYQGALELLERRRGKVLEFAVERPEEALRTLLL 244 TILLSSHLLSE++ IA +GIIS G L++QG++ L ++ + +A + L Sbjct: 192 TILLSSHLLSEIEQIATSVGIISEGNLLFQGSMTSLRKKNRNAIFMKTGDNAKAEQLLFN 251 Query: 245 QGFTVERKGNTLSVAAENASMTQ-AELFKLLGPYGIMNAR--EHSKSLEELFMELTGKGV 301 QG++ G+ + + N T+ AE+ KLL + I R E KSLE++F+E TGK Sbjct: 252 QGYSPINNGSRIELG--NLQDTEVAEMNKLLVEHEIAVTRIEEQKKSLEDIFLEFTGKER 309 Query: 302 SL 303 SL Sbjct: 310 SL 311 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,666,149,155 Number of extensions: 66267701 Number of successful extensions: 515900 Number of sequences better than 1.0e-05: 91458 Number of HSP's gapped: 414882 Number of HSP's successfully gapped: 98205 Length of query: 303 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 168 Effective length of database: 1,788,859,178 Effective search space: 300528341904 Effective search space used: 300528341904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)