BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0055.p (248 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B277.1 C3B277_BACMY Putative uncharacterized protein 112 4e-23 C3AU27.1 C3AU27_BACMY Putative uncharacterized protein 112 4e-23 C3BJ04.1 C3BJ04_9BACI Putative uncharacterized protein 112 4e-23 B1HZR7.1 B1HZR7_LYSSC Putative uncharacterized protein 106 2e-21 A3I6V3.1 A3I6V3_9BACI Putative uncharacterized protein 103 1e-20 >C3B277.1 C3B277_BACMY Putative uncharacterized protein Length = 242 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 7 MKAERMKLQYPVIFILILIGALGTVMLGINSL-DSENFAGFYVRGWKTFYLHMASFHGLF 65 ++AE K++ I+ L+ L ++ G+ + ++ N+ + + W+ Y M HG+ Sbjct: 7 IQAEFYKIKKTKIWTLLF---LSPILAGVIAYANASNYPDY--KHWELIYNIMIMVHGML 61 Query: 66 LYPLYAGVLASFICRYEHINGGWKQLFCLPIPRSRVYYAKXXXXXXXXXXXXXXFAGSYL 125 L PL G+ +FICRYEH NGGWKQL PI R VY K F SY+ Sbjct: 62 LLPLLTGIFTAFICRYEHSNGGWKQLLVQPISRYHVYIIKFLFILLFIGAMQVFFIISYI 121 Query: 126 LVGELLHLGNDLDVAELITGTVGGWLAILPFAALQLWVSMRLKSFXXXXXXXXXXXXXNI 185 VG+LLH+ +A ++ VGGW+A LP ALQLWVS SF + Sbjct: 122 SVGQLLHVPGPFPLATIVKSVVGGWIATLPLIALQLWVSSIWSSFSAPIALNVIASIPAM 181 Query: 186 VLTGLHASIGAWFPSTTAYYAMYPR 210 ++ A G +P + + AM P+ Sbjct: 182 IIAN-SARFGPIYPWSQPFLAMLPK 205 >C3AU27.1 C3AU27_BACMY Putative uncharacterized protein Length = 242 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 7 MKAERMKLQYPVIFILILIGALGTVMLGINSL-DSENFAGFYVRGWKTFYLHMASFHGLF 65 ++AE K++ I+ L+ L ++ G+ + ++ N+ + + W+ Y M HG+ Sbjct: 7 IQAEFYKIKKTKIWTLLF---LSPILAGVIAYANASNYPDY--KHWELIYNIMIMVHGML 61 Query: 66 LYPLYAGVLASFICRYEHINGGWKQLFCLPIPRSRVYYAKXXXXXXXXXXXXXXFAGSYL 125 L PL G+ +FICRYEH NGGWKQL PI R VY K F SY+ Sbjct: 62 LLPLLTGIFTAFICRYEHSNGGWKQLLVQPISRYHVYIIKFLFILLFIGAMQVFFIISYI 121 Query: 126 LVGELLHLGNDLDVAELITGTVGGWLAILPFAALQLWVSMRLKSFXXXXXXXXXXXXXNI 185 VG+LLH+ +A ++ VGGW+A LP ALQLWVS SF + Sbjct: 122 SVGQLLHVPGPFPLATIVKSVVGGWIATLPLIALQLWVSSIWSSFSAPIALNVIASIPAM 181 Query: 186 VLTGLHASIGAWFPSTTAYYAMYPR 210 ++ A G +P + + AM P+ Sbjct: 182 IIAN-SARFGPIYPWSQPFLAMLPK 205 >C3BJ04.1 C3BJ04_9BACI Putative uncharacterized protein Length = 242 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 7 MKAERMKLQYPVIFILILIGALGTVMLGINSL-DSENFAGFYVRGWKTFYLHMASFHGLF 65 ++AE K++ I+ L+ L ++ G+ + ++ N+ + + W+ Y M HG+ Sbjct: 7 IQAEFYKIKKTKIWTLLF---LSPILAGVIAYANASNYPDY--KHWELIYNIMIMVHGML 61 Query: 66 LYPLYAGVLASFICRYEHINGGWKQLFCLPIPRSRVYYAKXXXXXXXXXXXXXXFAGSYL 125 L PL G+ +FICRYEH NGGWKQL PI R VY K F SY+ Sbjct: 62 LLPLLTGIFTAFICRYEHSNGGWKQLLVQPISRYHVYIIKFLFILLFIGAMQVFFIISYI 121 Query: 126 LVGELLHLGNDLDVAELITGTVGGWLAILPFAALQLWVSMRLKSFXXXXXXXXXXXXXNI 185 VG+LLH+ +A ++ VGGW+A LP ALQLWVS SF + Sbjct: 122 SVGQLLHVPGPFPLATIVKSVVGGWIATLPLIALQLWVSSIWSSFAAPIALNVIASIPAM 181 Query: 186 VLTGLHASIGAWFPSTTAYYAMYPR 210 ++ A G +P + + AM P+ Sbjct: 182 IIAN-SARFGPIYPWSQPFLAMLPK 205 >B1HZR7.1 B1HZR7_LYSSC Putative uncharacterized protein Length = 245 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 1/211 (0%) Query: 3 MEYLMKAERMKLQYPVIFILILIGALGTVMLGINSLDSENFAGFYVRGWKTFYLHMASFH 62 M +++AE KL+ + +IL G + + +G+++ +N +G + W M + Sbjct: 1 MTAILRAEWFKLRKSKMVPIILAGPIIGLFIGLSANLEDNMSGVSINEWYIALFSMNLTY 60 Query: 63 GLFLYPLYAGVLASFICRYEHINGGWKQLFCLPIPRSRVYYAKXXXXXXXXXXXXXXFAG 122 L PL GVLAS ICRYEH +GGWKQL LP+ R +V+ AK + Sbjct: 61 ALLFLPLITGVLASLICRYEHHSGGWKQLLALPVTRGKVFVAKYVLIVLLVMAMQLLYLC 120 Query: 123 SYLLVGELLHLGNDLDVAELITGTVGGWLAILPFAALQLWVSMRLKSFXXXXXXXXXXXX 182 S VG + + + + VGGW+A LP ALQLW+S+ KSF Sbjct: 121 SVFAVGMIKGYTDPFPMEIVWKSIVGGWVATLPLVALQLWISIMFKSFAAPFAVNVVFTL 180 Query: 183 XNIVLTGLHASIGAWFPSTTAYYAMYPRGTA 213 +I IG ++P + MY G+ Sbjct: 181 PSIFAIN-SERIGPYYPWAQPFSMMYIGGST 210 >A3I6V3.1 A3I6V3_9BACI Putative uncharacterized protein Length = 245 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 1/211 (0%) Query: 3 MEYLMKAERMKLQYPVIFILILIGALGTVMLGINSLDSENFAGFYVRGWKTFYLHMASFH 62 M +++AE KL+ + +IL G + + +G+++ +N +G + W M + Sbjct: 1 MTAILRAEWFKLRKSKMVPIILAGPIIGLFIGLSANLEDNMSGVPINEWYIALFSMNLTY 60 Query: 63 GLFLYPLYAGVLASFICRYEHINGGWKQLFCLPIPRSRVYYAKXXXXXXXXXXXXXXFAG 122 L PL GV AS ICRYEH +GGWKQL LP+ R +V+ AK + Sbjct: 61 ALLFLPLITGVFASLICRYEHQSGGWKQLLALPVTRGKVFVAKYVLIVLLVMAMQILYLC 120 Query: 123 SYLLVGELLHLGNDLDVAELITGTVGGWLAILPFAALQLWVSMRLKSFXXXXXXXXXXXX 182 S VG + + + + VGGW+A LP ALQLW+S+ KSF Sbjct: 121 SVFTVGMIKGYTDPFPMEIVWKSIVGGWVATLPLVALQLWMSIMFKSFAAPFAVNVVFTL 180 Query: 183 XNIVLTGLHASIGAWFPSTTAYYAMYPRGTA 213 +I IG ++P + MY G+ Sbjct: 181 PSIFAIN-SERIGPYYPWAQPFSMMYIGGST 210 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,268,826,133 Number of extensions: 45127702 Number of successful extensions: 129883 Number of sequences better than 1.0e-05: 47 Number of HSP's gapped: 129888 Number of HSP's successfully gapped: 47 Length of query: 248 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 116 Effective length of database: 1,817,122,223 Effective search space: 210786177868 Effective search space used: 210786177868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)