BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0050.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0DAG0.1 C0DAG0_9CLOT Putative uncharacterized protein 296 2e-78 C5EKP9.1 C5EKP9_9FIRM Putative uncharacterized protein 260 1e-67 A7B2Y7.1 A7B2Y7_RUMGN Putative uncharacterized protein 255 4e-66 C5EFR8.1 C5EFR8_9FIRM General stress protein 69 252 3e-65 B7N5A7.1 B7N5A7_ECOLU Putative oxidoreductase; similar to aldo/k... 252 4e-65 >C0DAG0.1 C0DAG0_9CLOT Putative uncharacterized protein Length = 333 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/321 (46%), Positives = 208/321 (64%), Gaps = 2/321 (0%) Query: 1 MKTMQIGSSGIEASVLTLGAFGMGGGFQFPDTDDGESIRAIHAALDAGINCIDTAPVYGF 60 MK +IG+SGI AS +++GA+ +GGG + D DD ESIR IHAALD GIN IDTA VYGF Sbjct: 1 MKQREIGTSGIFASEMSMGAWAIGGGTWWGDNDDAESIRTIHAALDQGINWIDTARVYGF 60 Query: 61 GHSEEIVGQAIKGRRDKVILSTKCGLWWGDEEGSYRFTWEGRRVKRNLSPRVIRIEVEES 120 GHSEE+VG+A+K RR +VILSTKCGL W D+ G Y FT +G +V R+L P+ IR ++E S Sbjct: 61 GHSEEVVGKAVKDRRHEVILSTKCGLQWYDDGGEYHFTGDGHQVHRDLRPQAIRRDLELS 120 Query: 121 LRRLGTDYIDIYYTHNPAMEPFLTPIEETIGTLMELKKEGKIRAIGASNCEPHHIQSYIR 180 L+ LGTDYID+YYTH L PI ET+G LM +K+EGKIRAIGASN + H++ Y + Sbjct: 121 LKALGTDYIDVYYTHWQCKTYGLVPIAETMGELMRMKEEGKIRAIGASNVQLRHLEEYRQ 180 Query: 181 HGEISIVQKKYNMLSREAEADVLPLCKDNGISFHAYSPLAQGLLSGHIGKDYQLPQDDPR 240 G++ ++Q+KY+ML R E ++LP C+ N ++ YSP+ QGLL+G + Y + R Sbjct: 181 SGQLDVIQEKYSMLDRRVEEELLPYCEANTVTLQTYSPIEQGLLTGTVPNGYVPRPGEAR 240 Query: 241 RGDRWWQGEAFLLAVDFARELEALAREFGISTSSLAVAYLQARHEHVNVILGIRKERHLH 300 WW+ + +A + LA ++ S ++L +A+ R N++ G RK + Sbjct: 241 ENKLWWRPQTIAIANEMMDGWRDLADQYHCSIANLVIAWSMKRSPQFNILCGARKLHQIA 300 Query: 301 ENL--AGADFRFPDGAVEEID 319 EN+ AG + D A E D Sbjct: 301 ENVKSAGVELTNEDFARMEAD 321 >C5EKP9.1 C5EKP9_9FIRM Putative uncharacterized protein Length = 337 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 131/323 (40%), Positives = 205/323 (63%), Gaps = 1/323 (0%) Query: 4 MQIGSSGIEASVLTLGAFGMGGGFQFPDTDDGESIRAIHAALDAGINCIDTAPVYGFGHS 63 M++G++G+EASV+++G +GG + DD SIR IH AL+ GI+ D++ YGFGH+ Sbjct: 1 MKVGNTGMEASVISMGTLSIGGDGVWGANDDTVSIRTIHRALELGIDWFDSSNFYGFGHA 60 Query: 64 EEIVGQAIKGRRDKVILSTKCGLWWGDEEGSYRFTWEGRRVKRNLSPRVIRIEVEESLRR 123 EE++GQA++GRRDK +STKCGL W EGS FT +G ++ RNLSP +R +E SLRR Sbjct: 61 EEVLGQALQGRRDKCFISTKCGLEWDTGEGSPFFTRDGHQIYRNLSPMAVRRSLEGSLRR 120 Query: 124 LGTDYIDIYYTHNPAMEPFLTPIEETIGTLMELKKEGKIRAIGASNCEPHHIQSYIRHGE 183 L TDYID+Y TH ++ P TPIEET+GTLM+LKKEGKIRAIGASN I+ Y+++G+ Sbjct: 121 LKTDYIDLYITHWQSVPPAFTPIEETMGTLMDLKKEGKIRAIGASNVTAEDIREYLKYGQ 180 Query: 184 ISIVQKKYNMLSREAEADVLPLCKDNGISFHAYSPLAQGLLSGHIGKDYQL-PQDDPRRG 242 + ++Q++Y+ML + + LC ++ I++ AYS L +GLL+G + ++ P D Sbjct: 181 LDLIQERYSMLDPTSYDRLNGLCLEHNITYQAYSVLERGLLTGAYTMESKVTPGDARNEW 240 Query: 243 DRWWQGEAFLLAVDFARELEALAREFGISTSSLAVAYLQARHEHVNVILGIRKERHLHEN 302 W+Q + +D + L ++G + + L +A+ + ++NV G R+ + +N Sbjct: 241 SVWYQPKRRKRIIDLIEAWKPLCDKYGTTQAGLTIAWTLQQAPNINVDAGSRRVEAIEQN 300 Query: 303 LAGADFRFPDGAVEEIDRLLNRL 325 G F DG + ++ ++ + Sbjct: 301 ARGGGFLIEDGDLSMMNAMIKTV 323 >A7B2Y7.1 A7B2Y7_RUMGN Putative uncharacterized protein Length = 331 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 129/324 (39%), Positives = 195/324 (60%) Query: 2 KTMQIGSSGIEASVLTLGAFGMGGGFQFPDTDDGESIRAIHAALDAGINCIDTAPVYGFG 61 K IG++ ++ + +G + +GGG + + DD SIR I A+D GI DTAPVYG G Sbjct: 3 KERTIGTTTLKTPYIGMGTWAIGGGTWWGENDDALSIRTIEEAIDRGIVWFDTAPVYGIG 62 Query: 62 HSEEIVGQAIKGRRDKVILSTKCGLWWGDEEGSYRFTWEGRRVKRNLSPRVIRIEVEESL 121 HSE +VG+AIK R +++LSTKCGL W E + EGR V R+LS IR +E+SL Sbjct: 63 HSENVVGKAIKQNRSRILLSTKCGLEWDHETPCFHKVMEGRNVYRDLSAAAIRKNLEDSL 122 Query: 122 RRLGTDYIDIYYTHNPAMEPFLTPIEETIGTLMELKKEGKIRAIGASNCEPHHIQSYIRH 181 RRL TDYIDIYYTH + L P+EET+ TL++LKKEGKIRAIGASN I+ Y Sbjct: 123 RRLQTDYIDIYYTHWQTPDFSLYPLEETMDTLLQLKKEGKIRAIGASNVTAKIIEKYCSL 182 Query: 182 GEISIVQKKYNMLSREAEADVLPLCKDNGISFHAYSPLAQGLLSGHIGKDYQLPQDDPRR 241 G++ ++Q+KY++L ++LP+C+ + +S AYSPL QGLL+G + +D L D R Sbjct: 183 GQLDVIQEKYSLLDTHIADELLPVCQKHHVSIQAYSPLEQGLLTGKVTQDTVLSPTDVRN 242 Query: 242 GDRWWQGEAFLLAVDFARELEALAREFGISTSSLAVAYLQARHEHVNVILGIRKERHLHE 301 +++W ++ L ++ ++L ++ S S+L + A ++V+ G RK + + Sbjct: 243 KNKFWAQKSRLHILNVLQKLTPYTEKYSCSLSNLIIYLTAASLPDLHVLCGARKPEQIID 302 Query: 302 NLAGADFRFPDGAVEEIDRLLNRL 325 N+ + + E+ +L +L Sbjct: 303 NVKTLSLNLEEADLSEMSQLFEQL 326 >C5EFR8.1 C5EFR8_9FIRM General stress protein 69 Length = 307 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 125/287 (43%), Positives = 184/287 (64%), Gaps = 1/287 (0%) Query: 23 MGGGFQFPDTDDGESIRAIHAALDAGINCIDTAPVYGFGHSEEIVGQAIKG-RRDKVILS 81 MGG Q+ + DD S++AI AA++ GI IDTAP YGFGHSEE+VGQAI+ +R+ +I+ Sbjct: 1 MGGDAQWGEQDDAGSLKAIDAAVENGITMIDTAPAYGFGHSEELVGQAIRRFKREDLIIE 60 Query: 82 TKCGLWWGDEEGSYRFTWEGRRVKRNLSPRVIRIEVEESLRRLGTDYIDIYYTHNPAMEP 141 TKCG+WW D++G+ + +GR ++RNLS + + EV++SL RLG DYIDIY TH + P Sbjct: 61 TKCGVWWKDDQGTVILSRDGRTIRRNLSRKAMLQEVDDSLMRLGLDYIDIYVTHQQPLPP 120 Query: 142 FLTPIEETIGTLMELKKEGKIRAIGASNCEPHHIQSYIRHGEISIVQKKYNMLSREAEAD 201 F I E +GTL ELKK GKIRA+G SN ++ Y+R+G++ +VQ++Y+ML ++ Sbjct: 121 FNVEISEIMGTLNELKKAGKIRAVGISNASLDQLREYMRYGQVDLVQERYSMLDQKKINA 180 Query: 202 VLPLCKDNGISFHAYSPLAQGLLSGHIGKDYQLPQDDPRRGDRWWQGEAFLLAVDFAREL 261 LP+C++ I+ AYSPL QGLL+G IG DY L + R W+Q E +D Sbjct: 181 FLPICREYNITVQAYSPLEQGLLTGKIGMDYVLDAVNVRNKIAWFQPEKRQRVLDMLEGW 240 Query: 262 EALAREFGISTSSLAVAYLQARHEHVNVILGIRKERHLHENLAGADF 308 + L ++G + L +A+ + ++ NVI G RK H+ + G + Sbjct: 241 KDLCGKYGCGITELVIAWTLSGYDRTNVICGGRKIAHVLGYIKGGEL 287 >B7N5A7.1 B7N5A7_ECOLU Putative oxidoreductase; similar to aldo/keto reductase Length = 326 Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 135/315 (42%), Positives = 195/315 (61%), Gaps = 5/315 (1%) Query: 1 MKTMQIGSSGIEASVLTLGAFGMGGGFQFP-DTDDGESIRAIHAALDAGINCIDTAPVYG 59 MK + +G++ I S + LG + +GGG + D D I I A GIN IDTAP Y Sbjct: 1 MKKIPLGTTDITLSRMGLGTWAIGGGPAWNGDLDQQICIDTILEAHRCGINLIDTAPGYN 60 Query: 60 FGHSEEIVGQAIKGR-RDKVILSTKCGLWWGDEEGSYRFTWEGRRVKRNLSPRVIRIEVE 118 FG+SE IVGQA+K R++V++ TKCG+ W + +GS R++ +NLSP IR EVE Sbjct: 61 FGNSEVIVGQALKKLPREQVVVETKCGIVW-ERKGSLFNKVGDRQLYKNLSPESIREEVE 119 Query: 119 ESLRRLGTDYIDIYYTHNPAMEPFLTPIEETIGTLMELKKEGKIRAIGASNCEPHHIQSY 178 SL+RLG DYIDIY TH ++ PF TPI ET+ L ELK EGKIRAIGA+N + HI+ Y Sbjct: 120 ASLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKAEGKIRAIGAANVDADHIREY 179 Query: 179 IRHGEISIVQKKYNMLSREAEADVLPLCKDNGISFHAYSPLAQGLLSGHIGKDYQLPQDD 238 +++GE+ I+Q KY++L R E+++LPLC+DNGI YSPL QGLL+G I +DY +P Sbjct: 180 LQYGELDIIQAKYSILDRAMESELLPLCRDNGIVVQVYSPLEQGLLTGTITRDY-VP-GG 237 Query: 239 PRRGDRWWQGEAFLLAVDFARELEALAREFGISTSSLAVAYLQARHEHVNVILGIRKERH 298 R W+Q E L +D + + L + + +LA+A++ + + ++++ G Sbjct: 238 ARANKVWFQRENMLKVIDMLEQWQPLCARYQCTIPTLALAWILKQSDLISILSGATAPEQ 297 Query: 299 LHENLAGADFRFPDG 313 + EN+A + D Sbjct: 298 VRENVAALNINLSDA 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,067,986,539 Number of extensions: 89530324 Number of successful extensions: 321919 Number of sequences better than 1.0e-05: 7795 Number of HSP's gapped: 305879 Number of HSP's successfully gapped: 7859 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)