BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0047.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LR45.1 A6LR45_CLOB8 Lipoprotein, YaeC family 131 5e-29 C5F018.1 C5F018_9HELI Abc-transport periplasmic protein 131 7e-29 C1UI07.1 C1UI07_9ACTN ABC-type metal ion transport system, perip... 131 8e-29 B1QCW0.1 B1QCW0_CLOBO Lipoprotein, NLPA family 130 1e-28 B1QIZ9.1 B1QIZ9_CLOBO Lipoprotein, NLPA family 130 2e-28 >A6LR45.1 A6LR45_CLOB8 Lipoprotein, YaeC family Length = 276 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 11/255 (4%) Query: 22 GCSKSASGGQS-----KHIVIGVIAREQPDIDYVAEKL-KTEGYDIEVKVFNDNIALNNA 75 GC +A+ G K I IGV + +I +A+ L + EGY +E+ FND N A Sbjct: 21 GCGGTATSGSKDSKNDKVIKIGVTPKPHEEIVNIAKPLLEKEGYTVEITEFNDYNQPNTA 80 Query: 76 TSEGEIDANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIG 135 EG +DAN+FQ+ YLN N S G L++ G I+ P+ SKK KS+D L +GA I Sbjct: 81 VEEGSLDANFFQHTPYLNEQNSSKGYHLVSVGA-IHLEPMGLYSKKVKSLDELKDGATIA 139 Query: 136 IANDSANRARELQLLAANGFIKLREGVELPTLLDITENKKKLNFVEIDPRSRVGAFADLD 195 + ND +N AR L+LLA G IK+++G EL T DITEN K L F E++ + A D+D Sbjct: 140 VPNDPSNEARALKLLAGKGLIKIKDG-ELVTSKDITENPKNLKFNELEAAAVPRAIDDVD 198 Query: 196 AMTAPSITVYQMKDPEVTIDTALFQETPEVYKQYGGIVLAINKDTEDQNKEWLDKVVNIL 255 A + K + + E K Y IV+ ++N+E + +V + Sbjct: 199 AAVINGNYAIEAKFNPAKDAIIIEDKASEAAKPYANIVVV---KQGNENQEKIKALVKAM 255 Query: 256 SSKEYADWLLKTYSG 270 +S E +++ K Y+G Sbjct: 256 TSPEVKEFIEKEYNG 270 >C5F018.1 C5F018_9HELI Abc-transport periplasmic protein Length = 271 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 143/260 (55%), Gaps = 16/260 (6%) Query: 22 GCSKSA------SGGQSKHIVIGVIAREQPDIDYVAEKLKTEGYDIEVKVFNDNIALNNA 75 GC SA S G+ K +V ++ V LK EG +E+K F D + N + Sbjct: 19 GCGDSAKENSAESKGEVKLVVGATPEPHAVILEQVIPVLKKEGVVLEIKEFTDYVTPNLS 78 Query: 76 TSEGEIDANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIG 135 ++G +DAN+FQ++ YL+SFN+ GT L++ NI+ P+ S K KS+D L EG + Sbjct: 79 LNDGSLDANFFQHKPYLDSFNKERGTKLVSVA-NIHLEPMGVYSNKIKSLDELKEGDLVS 137 Query: 136 IANDSANRARELQLLAANGFIKLREGVELPTLLDITENKKKLNFVEIDPRSRVGAFADLD 195 + ND +N AR L++L ANG IKL+EGVEL ++ DI EN KKLNF E+D A LD Sbjct: 138 LPNDPSNGARALRILEANGLIKLKEGVELVSVQDIVENPKKLNFKEMDAPQLARA---LD 194 Query: 196 AMTAPSI-TVYQMKDPEVTIDTALFQETPEVYKQYGGIVLAINKDTEDQNKEWLDKVVNI 254 +T I T + + ++ A+ E+ + + IV+ K+ + +N+ + K+V Sbjct: 195 DVTISVINTNFALLAGLNPLNDAIALESKD--SPFANIVVV--KEGQ-ENEAAIKKLVEA 249 Query: 255 LSSKEYADWLLKTYSGVKKP 274 L S+E D++L Y G P Sbjct: 250 LQSQEIKDFILTHYKGAILP 269 >C1UI07.1 C1UI07_9ACTN ABC-type metal ion transport system, periplasmic component/surface antigen Length = 276 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 131/250 (52%), Gaps = 9/250 (3%) Query: 22 GCSKSASGGQSKHIVIGVIAREQPDI-DYVAEKLKTEGYDIEVKVFNDNIALNNATSEGE 80 GC +A+ G K IV+G +I + V ++L EGY +EVK F D + N A +G Sbjct: 25 GCGSNAAAGDEKTIVVGASPTPHAEILEQVKDRLADEGYTLEVKEFTDYVQPNTALEDGA 84 Query: 81 IDANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIGIANDS 140 +DANYFQ+ YL FN GT+L + G I+ P+ K S+D+LP+GA+I + +D+ Sbjct: 85 LDANYFQHITYLEDFNDERGTNLASAG-GIHFEPLCLYPGKTASLDALPDGAQIAVPSDT 143 Query: 141 ANRARELQLLAANGFIKLREGVEL-PTLLDITENKKKLNFVEIDPRSRVGAFADLD-AMT 198 N AR L LL + G IK+R+G L T DI EN K L VE + S D+D A+ Sbjct: 144 TNEARALLLLESQGLIKIRDGAGLAATANDIVENPKNLTIVETEAASLPRTLQDVDLAVI 203 Query: 199 APSITVYQMKDPEVTIDTALFQETPEVYKQYGGIVLAINKDTEDQNKEWLDKVVNILSSK 258 + + +PE + A E E +Y +V A+ D++ E + +VN L S Sbjct: 204 NGNYAIGAGLEPETAL--ASEDENSEAADKYVNVV-AVRAG--DESSEKIKALVNALQSD 258 Query: 259 EYADWLLKTY 268 E ++ TY Sbjct: 259 EVKRFIEDTY 268 >B1QCW0.1 B1QCW0_CLOBO Lipoprotein, NLPA family Length = 272 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 24/253 (9%) Query: 28 SGGQSKHIVIG--VIAREQPDIDYVAEKL---KTEGYDIEVKVFNDNIALNNATSEGEID 82 + G K I IG VI++ D+ A+K+ K+ YD++VKVF+D I N A ++G ID Sbjct: 36 TSGDKKVITIGTSVISK---DVLEEAQKVFNKKSSKYDMKVKVFDDAITPNMAVNDGSID 92 Query: 83 ANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIGIANDSAN 142 N++Q + Y+ +FN+ GT L YG ++ + S K K + + + + ++ND+ N Sbjct: 93 GNFYQYQDYMENFNKDRGTKLKAYGKPVFAFQIGLYSNKVKKISDIKDKMTVAVSNDNTN 152 Query: 143 RARELQLLAANGFIKLREGVELPTLLDITENKKKLNFVEIDPRSRVGAFADLD-AMTAPS 201 RA L+LL G IKL++GVE+P LDI ENK L FVE++ + A D D A+ Sbjct: 153 RALALKLLDKEGIIKLKKGVEVPNTLDIVENKHNLKFVEMERLNLANALNDTDMAIVMAD 212 Query: 202 ITVYQMKDPEVTIDTALFQETPEVYKQYGGIVLAINKDTEDQNKEWLDKVVNILSSKEYA 261 + + KD E + + Q GIVL + +D KEW +V L+S E Sbjct: 213 VMLKAGKDSEKAL----------AFAQEEGIVLVLKED-----KEWAKEVEEALTSNEVK 257 Query: 262 DWLLKTYSGVKKP 274 ++ + G K P Sbjct: 258 TFIKEKTKGTKTP 270 >B1QIZ9.1 B1QIZ9_CLOBO Lipoprotein, NLPA family Length = 272 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 24/253 (9%) Query: 28 SGGQSKHIVIG--VIAREQPDIDYVAEKL---KTEGYDIEVKVFNDNIALNNATSEGEID 82 + G K I IG VI++ D+ A+K+ K+ Y+++VKVF+D I N A ++G ID Sbjct: 36 TSGDKKVITIGTSVISK---DVLEEAQKVFNKKSSKYEMKVKVFDDAITPNMAVNDGSID 92 Query: 83 ANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIGIANDSAN 142 N++Q E Y+ +FN+ GT L YG ++ + S K K + + + + ++ND+ N Sbjct: 93 GNFYQYEDYMENFNKDRGTKLKAYGKPVFAFQIGLYSNKVKKISDIKDKMTVAVSNDNTN 152 Query: 143 RARELQLLAANGFIKLREGVELPTLLDITENKKKLNFVEIDPRSRVGAFADLD-AMTAPS 201 RA L+LL G IKL++GVE+P LDI ENK L FVE++ + A D D A+ Sbjct: 153 RALALKLLDKEGIIKLKKGVEVPNTLDIVENKHNLKFVEMERLNLANALNDTDMAIVMAD 212 Query: 202 ITVYQMKDPEVTIDTALFQETPEVYKQYGGIVLAINKDTEDQNKEWLDKVVNILSSKEYA 261 + + KD E + + Q GIVL + +D KEW +V L+S E Sbjct: 213 VMLKAGKDSEKAL----------AFAQEEGIVLVLKED-----KEWAKEVEEALTSNEVK 257 Query: 262 DWLLKTYSGVKKP 274 ++ + G K P Sbjct: 258 TFIKEKTKGTKTP 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,603,309,149 Number of extensions: 67551816 Number of successful extensions: 155768 Number of sequences better than 1.0e-05: 1930 Number of HSP's gapped: 152391 Number of HSP's successfully gapped: 1931 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 130 (54.7 bits)