BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0046.p (225 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1L1A8.1 B1L1A8_CLOBM Methionine ABC transporter, MUT family, pe... 166 9e-40 C3KVD5.1 C3KVD5_CLOB6 Methionine ABC transporter, MUT family, pe... 166 2e-39 B1QIZ8.1 B1QIZ8_CLOBO Methionine ABC transporter, MUT family, pe... 166 2e-39 C1FMJ0.1 C1FMJ0_CLOBJ Methionine ABC transporter, MUT family, pe... 164 5e-39 B1IKV3.1 B1IKV3_CLOBK Methionine ABC transporter, MUT family, pe... 164 5e-39 >B1L1A8.1 B1L1A8_CLOBM Methionine ABC transporter, MUT family, permease protein Length = 229 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 121/216 (56%) Query: 10 DFQTILDRIIVPGLRDTLIMLGGTVVTCTFFGFVLALILITTDVNGLRPNRLVYETISAV 69 + T++ +II P L +T+ M+ + GF+LA++L+ TD G++PN+++Y +SA+ Sbjct: 14 EITTLMKQIIFPSLWETIYMIIIATILSFVIGFILAIVLVVTDEKGIKPNKIIYGILSAI 73 Query: 70 INVLRSVPFXXXXXXXXXXXRLVVGTTIGTTAAIFSITIVGSPLIARLLEGCFKEVNPSL 129 IN+LRSVPF R VVGT+IG AAI + I +P IARL+E KEVNPSL Sbjct: 74 INILRSVPFIILAVAIIPFTRSVVGTSIGKNAAIVPLIIASAPFIARLIESSLKEVNPSL 133 Query: 130 IEAAKSFGASDWQITFHXXXXXXXXXXXXHLTLGYVSLLGFTAMXXXXXXXXXXXXXXXX 189 IEAAKSFGAS+ QI F +LTL +++LG TAM Sbjct: 134 IEAAKSFGASNIQIIFKVMVKEAIPSINLNLTLATITILGLTAMAGAVGAGGLGAVGLTY 193 Query: 190 XXQNFNDTIMYSTXXXXXXXXXXXXXGGNFLYRKLK 225 Q+FNDTIMY+T GN +Y+KLK Sbjct: 194 GYQSFNDTIMYTTLVLLVIIVGIIQFVGNVIYKKLK 229 >C3KVD5.1 C3KVD5_CLOB6 Methionine ABC transporter, MUT family, permease protein Length = 218 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 120/216 (55%) Query: 10 DFQTILDRIIVPGLRDTLIMLGGTVVTCTFFGFVLALILITTDVNGLRPNRLVYETISAV 69 + T++ +II+P L T+ M+ + GF+LA++L TD G++PN+++Y +SA+ Sbjct: 3 EITTLMKQIILPSLWQTIYMIIIATILSFVIGFILAIVLAVTDERGIKPNKIIYGILSAI 62 Query: 70 INVLRSVPFXXXXXXXXXXXRLVVGTTIGTTAAIFSITIVGSPLIARLLEGCFKEVNPSL 129 INVLRSVPF R +VGT+IG AAI +TI +P IARL+E KEVNPSL Sbjct: 63 INVLRSVPFIILAVAIIPFTRSIVGTSIGENAAIVPLTIASAPFIARLIESSLKEVNPSL 122 Query: 130 IEAAKSFGASDWQITFHXXXXXXXXXXXXHLTLGYVSLLGFTAMXXXXXXXXXXXXXXXX 189 IEAAKSFGAS+ QI F LTL +++LG TAM Sbjct: 123 IEAAKSFGASNIQIIFKVMVKEAIPSINLDLTLATITILGLTAMAGAVGAGGLGAVGLTY 182 Query: 190 XXQNFNDTIMYSTXXXXXXXXXXXXXGGNFLYRKLK 225 Q+FNDTIMY+T GN +Y+KLK Sbjct: 183 GYQSFNDTIMYTTLILLVIIVGIIQFVGNIIYKKLK 218 >B1QIZ8.1 B1QIZ8_CLOBO Methionine ABC transporter, MUT family, permease protein Length = 218 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 120/216 (55%) Query: 10 DFQTILDRIIVPGLRDTLIMLGGTVVTCTFFGFVLALILITTDVNGLRPNRLVYETISAV 69 + T++ +II+P L T+ M+ + GF+LA++L TD G++PN+++Y +SA+ Sbjct: 3 EITTLMKQIILPSLWQTIYMIIIATILSFVIGFILAIVLAVTDERGIKPNKIIYGILSAI 62 Query: 70 INVLRSVPFXXXXXXXXXXXRLVVGTTIGTTAAIFSITIVGSPLIARLLEGCFKEVNPSL 129 INVLRSVPF R +VGT+IG AAI +TI +P IARL+E KEVNPSL Sbjct: 63 INVLRSVPFIILAVAIIPFTRSIVGTSIGENAAIVPLTIASAPFIARLIESSLKEVNPSL 122 Query: 130 IEAAKSFGASDWQITFHXXXXXXXXXXXXHLTLGYVSLLGFTAMXXXXXXXXXXXXXXXX 189 IEAAKSFGAS+ QI F LTL +++LG TAM Sbjct: 123 IEAAKSFGASNIQIIFKVMVKEAIPSINLDLTLATITILGLTAMAGAVGAGGLGAVGLTY 182 Query: 190 XXQNFNDTIMYSTXXXXXXXXXXXXXGGNFLYRKLK 225 Q+FNDTIMY+T GN +Y+KLK Sbjct: 183 GYQSFNDTIMYTTLILLVIIVGIIQFVGNIIYKKLK 218 >C1FMJ0.1 C1FMJ0_CLOBJ Methionine ABC transporter, MUT family, permease protein Length = 218 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 120/216 (55%) Query: 10 DFQTILDRIIVPGLRDTLIMLGGTVVTCTFFGFVLALILITTDVNGLRPNRLVYETISAV 69 + T++ +II+P L T+ M+ + + GF+LA++L TD G++PN+++Y +S + Sbjct: 3 EITTLMKQIILPSLWQTIYMIIISTILSFVIGFILAIVLAVTDERGIKPNKIIYGILSTI 62 Query: 70 INVLRSVPFXXXXXXXXXXXRLVVGTTIGTTAAIFSITIVGSPLIARLLEGCFKEVNPSL 129 INVLRSVPF R +VGT+IG AAI +TI +P IARL+E KEVNPSL Sbjct: 63 INVLRSVPFIILAVAIIPFTRSIVGTSIGENAAIVPLTIASAPFIARLIESSLKEVNPSL 122 Query: 130 IEAAKSFGASDWQITFHXXXXXXXXXXXXHLTLGYVSLLGFTAMXXXXXXXXXXXXXXXX 189 IEAAKSFGAS+ QI F LTL +++LG TAM Sbjct: 123 IEAAKSFGASNIQIIFKVMVKEAIPSINLDLTLATITILGLTAMAGAVGAGGLGAVGLTY 182 Query: 190 XXQNFNDTIMYSTXXXXXXXXXXXXXGGNFLYRKLK 225 Q+FNDTIMY+T GN +Y+KLK Sbjct: 183 GYQSFNDTIMYTTLILLVIIVGIIQFVGNIIYKKLK 218 >B1IKV3.1 B1IKV3_CLOBK Methionine ABC transporter, MUT family, permease protein Length = 218 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 120/216 (55%) Query: 10 DFQTILDRIIVPGLRDTLIMLGGTVVTCTFFGFVLALILITTDVNGLRPNRLVYETISAV 69 + T++ +II+P L T+ M+ + + GF+LA++L TD G++PN+++Y +S + Sbjct: 3 EITTLMKQIILPSLWQTIYMIIISTILSFVIGFILAIVLAVTDERGIKPNKIIYGILSTI 62 Query: 70 INVLRSVPFXXXXXXXXXXXRLVVGTTIGTTAAIFSITIVGSPLIARLLEGCFKEVNPSL 129 INVLRSVPF R +VGT+IG AAI +TI +P IARL+E KEVNPSL Sbjct: 63 INVLRSVPFIILAVAIIPFTRSIVGTSIGENAAIVPLTIASAPFIARLIESSLKEVNPSL 122 Query: 130 IEAAKSFGASDWQITFHXXXXXXXXXXXXHLTLGYVSLLGFTAMXXXXXXXXXXXXXXXX 189 IEAAKSFGAS+ QI F LTL +++LG TAM Sbjct: 123 IEAAKSFGASNIQIIFKVMVKEAIPSINLDLTLATITILGLTAMAGAVGAGGLGAVGLTY 182 Query: 190 XXQNFNDTIMYSTXXXXXXXXXXXXXGGNFLYRKLK 225 Q+FNDTIMY+T GN +Y+KLK Sbjct: 183 GYQSFNDTIMYTTLILLVIIVGIIQFVGNIIYKKLK 218 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 906,731,227 Number of extensions: 27377039 Number of successful extensions: 94147 Number of sequences better than 1.0e-05: 1357 Number of HSP's gapped: 93948 Number of HSP's successfully gapped: 1357 Length of query: 225 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 94 Effective length of database: 1,826,543,238 Effective search space: 171695064372 Effective search space used: 171695064372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)