BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0045.p (317 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3KVD4.1 C3KVD4_CLOB6 Methionine ABC transporter, MUT family, AT... 389 e-106 B1QIZ7.1 B1QIZ7_CLOBO Methionine ABC transporter, MUT family, AT... 389 e-106 B1QCV8.1 B1QCV8_CLOBO Methionine ABC transporter, MUT family, AT... 377 e-103 A7GDI4.1 A7GDI4_CLOBL Methionine ABC transporter, MUT family, AT... 377 e-102 C1FMI9.1 C1FMI9_CLOBJ Methionine ABC transporter, MUT family, AT... 376 e-102 >C3KVD4.1 C3KVD4_CLOB6 Methionine ABC transporter, MUT family, ATP-binding protein Length = 320 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/322 (59%), Positives = 238/322 (73%), Gaps = 7/322 (2%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MIEI L K + + VL INV I GDIYGLVG+SGAGKSTLLRCINGLE++E G L+V Sbjct: 1 MIEISNLQKFYSNTEVLHNINVNIDKGDIYGLVGVSGAGKSTLLRCINGLESYEGGNLKV 60 Query: 61 NGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHEL 120 NG ++ L+G +LR FR IGMIFQQFSLLERKTVYEN+ PM+C+ YKK + D ++ EL Sbjct: 61 NGIEVKKLNGKKLRAFRKNIGMIFQQFSLLERKTVYENVALPMECWGYKKTDIDRKVKEL 120 Query: 121 LRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLK 180 L LVEL DKI S+P +LSGGQKQRVAIARAL ++P+ILLCDEATSALDPNIT SIL LLK Sbjct: 121 LELVELKDKINSKPRELSGGQKQRVAIARALTLDPEILLCDEATSALDPNITNSILELLK 180 Query: 181 KINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLGSAG 240 KINR+LGITI++VTH+MEVVK+VC MA+LSKG L+ G+V+DIFL + L ELLG Sbjct: 181 KINRDLGITIIVVTHEMEVVKKVCNKMAILSKGNLEAKGNVEDIFLDKPVVLEELLGPLE 240 Query: 241 ---MGQQGDKVVFEMVQRPG--QNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAV 295 + +QG V E+++R ++ LLS A T +++ +VWGG D+Y D I GAF + V Sbjct: 241 DNVIPEQG--VNIEIIERENIQKSSLLSSLAIDTKVKYSLVWGGTDKYRDKILGAFVINV 298 Query: 296 DKDDFPKAQAFLEDTDTEWRRV 317 KDD K +L + EWR V Sbjct: 299 KKDDKSKITNYLNEKHIEWREV 320 >B1QIZ7.1 B1QIZ7_CLOBO Methionine ABC transporter, MUT family, ATP-binding protein Length = 320 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/322 (59%), Positives = 237/322 (73%), Gaps = 7/322 (2%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MIEI L K + + VL INV I GDIYGLVG+SGAGKSTLLRCINGLE++E G L+V Sbjct: 1 MIEISNLQKFYSNTEVLHNINVNIDKGDIYGLVGVSGAGKSTLLRCINGLESYEGGNLKV 60 Query: 61 NGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHEL 120 NG ++ L+G +LR FR IGMIFQQFSLLERKTVYEN+ PM+C+ YKK + D ++ EL Sbjct: 61 NGIEVKKLNGKKLRAFRKNIGMIFQQFSLLERKTVYENVALPMECWGYKKTDIDRKVKEL 120 Query: 121 LRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLK 180 L LVEL DKI S+P +LSGGQKQRVAIARAL + P+ILLCDEATSALDPNIT SIL LLK Sbjct: 121 LELVELKDKINSKPRELSGGQKQRVAIARALTLEPEILLCDEATSALDPNITNSILELLK 180 Query: 181 KINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLGSAG 240 KINR+LGITI++VTH+MEVVK+VC MA+LSKG L+ G+V+DIFL + L ELLG Sbjct: 181 KINRDLGITIIVVTHEMEVVKKVCNKMAILSKGNLEAKGNVEDIFLDKPVVLEELLGPLE 240 Query: 241 ---MGQQGDKVVFEMVQRPG--QNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAV 295 + +QG V E+++R ++ LLS A T +++ +VWGG D+Y D I GAF + V Sbjct: 241 DNVIPEQG--VNIEIIERENIQKSSLLSSLAIDTKVKYSLVWGGTDKYRDKILGAFVINV 298 Query: 296 DKDDFPKAQAFLEDTDTEWRRV 317 KDD K +L + EWR V Sbjct: 299 KKDDKSKITNYLNEKHIEWREV 320 >B1QCV8.1 B1QCV8_CLOBO Methionine ABC transporter, MUT family, ATP-binding protein Length = 320 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 239/322 (74%), Gaps = 7/322 (2%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MIEI L K +GD VL INV I GDIYGL+G+SGAGKSTLLRCINGLE++E G+L+V Sbjct: 1 MIEISNLQKFYGDTKVLRDINVEINKGDIYGLLGVSGAGKSTLLRCINGLESYEAGSLKV 60 Query: 61 NGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHEL 120 N ++ +L+ ELR FR IGMIFQQFSLLERKTVYEN+ PM+C+ YKK + D ++ EL Sbjct: 61 NDVEVKNLNEKELRAFRKNIGMIFQQFSLLERKTVYENVALPMECWGYKKQDIDKKVKEL 120 Query: 121 LRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLK 180 L LVEL DKI+S+P +LSGGQKQRVAIARAL ++P+ILLCDEATSALDP+IT SIL LLK Sbjct: 121 LELVELGDKIKSKPKELSGGQKQRVAIARALTLDPQILLCDEATSALDPSITNSILELLK 180 Query: 181 KINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLGSAG 240 KINRELGITIV+VTHQM VVK+VC MA+LSKG L+ G V+DIFL + + L ELLG Sbjct: 181 KINRELGITIVVVTHQMNVVKQVCNKMAILSKGNLEAKGKVEDIFLDKPKVLEELLGELE 240 Query: 241 ---MGQQGDKVVFEMVQRPG--QNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAV 295 + +QG V E+++R ++ LLS A T +++ +VWGG D+Y D I GAF + + Sbjct: 241 YNVIPKQG--VNIEIIERENIQKSSLLSSLAIDTKVKYSLVWGGTDKYRDKILGAFVINI 298 Query: 296 DKDDFPKAQAFLEDTDTEWRRV 317 +DD K +L + EWR V Sbjct: 299 KEDDKLKITNYLNEEHIEWREV 320 >A7GDI4.1 A7GDI4_CLOBL Methionine ABC transporter, MUT family, ATP-binding protein Length = 320 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 239/322 (74%), Gaps = 7/322 (2%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MIEI L K +GD VL INV I GDIYGL+G+SGAGKSTLLRCINGLE++E G+L+V Sbjct: 1 MIEISNLQKLYGDTKVLRDINVEIDKGDIYGLLGVSGAGKSTLLRCINGLESYEAGSLKV 60 Query: 61 NGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHEL 120 N ++ +L+ ELR FR IGMIFQQFSLLERKTVYEN+ PM+C+ YKK + D ++ EL Sbjct: 61 NDVEVKNLNEKELRAFRKNIGMIFQQFSLLERKTVYENVALPMECWGYKKQDIDKKVKEL 120 Query: 121 LRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLK 180 L LVEL DKI+S+P +LSGGQKQRVAIARAL ++P+ILLCDEATSALDP+IT SIL LLK Sbjct: 121 LELVELGDKIKSKPKELSGGQKQRVAIARALTLDPQILLCDEATSALDPSITNSILELLK 180 Query: 181 KINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLGSAG 240 KINRELGITIV+VTHQM VVK+VC MA+LSKG L+ G V+DIFL + + L ELLG Sbjct: 181 KINRELGITIVVVTHQMNVVKQVCNKMAILSKGNLEAKGKVEDIFLDKPKVLEELLGELE 240 Query: 241 ---MGQQGDKVVFEMVQRPG--QNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAV 295 + +QG V E+++R ++ LLS A T +++ +VWGG D+Y D I GAF + + Sbjct: 241 DNVIPKQG--VNIEIIERENIQKSSLLSSLAIDTKVKYSLVWGGTDKYRDKILGAFVINI 298 Query: 296 DKDDFPKAQAFLEDTDTEWRRV 317 +DD K +L + EWR V Sbjct: 299 KEDDKLKITNYLNEKHIEWREV 320 >C1FMI9.1 C1FMI9_CLOBJ Methionine ABC transporter, MUT family, ATP-binding protein Length = 320 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 239/322 (74%), Gaps = 7/322 (2%) Query: 1 MIEIKELYKSFGDKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRV 60 MIEI L K +GD VL INV I GDIYGL+G+SGAGKSTLLRCINGLE++E G+L+V Sbjct: 1 MIEISNLQKFYGDTKVLRDINVEIDKGDIYGLLGVSGAGKSTLLRCINGLESYEAGSLKV 60 Query: 61 NGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHEL 120 N ++ +L+ ELR FR IGMIFQQFSLLERKTVYEN+ PM+C+ YKK + D ++ EL Sbjct: 61 NDVEVKNLNEKELRAFRKNIGMIFQQFSLLERKTVYENVALPMECWGYKKQDIDKKVKEL 120 Query: 121 LRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLK 180 L LVEL DKI+S+P +LSGGQKQRVAIARAL ++P+ILLCDEATSALDP+IT SIL LLK Sbjct: 121 LELVELGDKIKSKPKELSGGQKQRVAIARALTLDPQILLCDEATSALDPSITNSILELLK 180 Query: 181 KINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAELLGSAG 240 KINRELGITIV+VTHQM VVK+VC MA+LSKG L+ G V+DIFL + + L ELLG Sbjct: 181 KINRELGITIVVVTHQMNVVKQVCNKMAILSKGNLEAKGKVEDIFLDKPKVLEELLGELE 240 Query: 241 ---MGQQGDKVVFEMVQRPG--QNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAV 295 + +QG V E+++R ++ LLS A T +++ +VWGG D+Y D I GAF + + Sbjct: 241 YNVIPKQG--VNIEIIERENIQKSSLLSSLAIDTKVKYSLVWGGTDKYRDKILGAFVINI 298 Query: 296 DKDDFPKAQAFLEDTDTEWRRV 317 +DD K +L + EWR V Sbjct: 299 KEDDKLKITNYLNEEHIEWREV 320 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,742,040,866 Number of extensions: 68519148 Number of successful extensions: 494579 Number of sequences better than 1.0e-05: 99708 Number of HSP's gapped: 362141 Number of HSP's successfully gapped: 108830 Length of query: 317 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 182 Effective length of database: 1,788,859,178 Effective search space: 325572370396 Effective search space used: 325572370396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)