BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0043.p (336 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IPP0.1 A4IPP0_GEOTN Transcriptional regulator LacI-family 301 9e-80 B4BNW2.1 B4BNW2_9BACI Transcriptional regulator, LacI family 301 9e-80 A7Z2G3.1 A7Z2G3_BACA2 Putative transcriptional regulator 275 5e-72 A8FJ80.1 A8FJ80_BACP2 LacI family transcriptional regulator 262 3e-68 B4AK33.1 B4AK33_BACPU LacI family transcriptional regulator 261 5e-68 >A4IPP0.1 A4IPP0_GEOTN Transcriptional regulator LacI-family Length = 350 Score = 301 bits (770), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 151/326 (46%), Positives = 218/326 (66%), Gaps = 2/326 (0%) Query: 1 VADDAGVSRATASLVVRGSKSIKPSTHKKVMDSIEKLGYVYDRVAASFRSQSSSTVGIVI 60 VA AGVSRATASLVVRGS +I T +KV+ S+++LGYVYDRVAA+ RSQ SSTVG++I Sbjct: 22 VAKHAGVSRATASLVVRGSPNISKETREKVLQSMKELGYVYDRVAANLRSQRSSTVGLII 81 Query: 61 TDFENPFYHQMLTKVEDMLYEQQFTFLLGMSSESREKQERVLETMLEHRVCGIILTPVVD 120 T+ +NPF+ ++L V + L E+ +T +LG + + EKQ+ +L TMLEHRV G+I++PV Sbjct: 82 TELDNPFFSELLVGVHEALDEEGYTVILGTTFDRPEKQDALLSTMLEHRVGGVIMSPVPG 141 Query: 121 TQPTLFNKLRALQIPALLMGREVAGSGA-DYVGTDYRLGSQLAVRHLVEQGHRRIAYIGG 179 + +LR IP +L RE +G DY+G D G +LA HL++QGHRRIA+IGG Sbjct: 142 CSTEMLERLRQWDIPVVLFAREEIPAGQFDYIGIDNVAGGRLATEHLIDQGHRRIAFIGG 201 Query: 180 MLPGNTAYQERIDGYCSALQEYGLEVDPKLIMPTPLNREGGIRAIQEVLKLENPPTACFC 239 P ++ ++ R GY AL+ G++VD L+ P+ R+GG A+++ L+ NPPTA FC Sbjct: 202 S-PLSSVWKARKAGYSEALRAAGIDVDETLLFPSATARQGGRMAVKQALQHPNPPTALFC 260 Query: 240 HNDIIALGVTIGLRLQGLIPGEHMAIVGFDNILETETVEPKLTTVSVFHDQWGVEAARQI 299 +ND++A G +GL+ +GL+PG +A+VGFDNI E+ +P LTTV+ F + G AAR++ Sbjct: 261 YNDVVAFGAMLGLKEEGLVPGRDIAVVGFDNIQESALFQPPLTTVAAFPENIGACAARRL 320 Query: 300 LDRIGGLQSDXXXXXXXXXXXXRKSS 325 +R+ G S+ R+SS Sbjct: 321 HERMEGDDSEPKRMILNPELIVRQSS 346 >B4BNW2.1 B4BNW2_9BACI Transcriptional regulator, LacI family Length = 350 Score = 301 bits (770), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 151/326 (46%), Positives = 218/326 (66%), Gaps = 2/326 (0%) Query: 1 VADDAGVSRATASLVVRGSKSIKPSTHKKVMDSIEKLGYVYDRVAASFRSQSSSTVGIVI 60 VA AGVSRATASLVVRGS +I T +KV+ S+++LGYVYDRVAA+ RSQ SSTVG++I Sbjct: 22 VAKHAGVSRATASLVVRGSPNISKETREKVLQSMKELGYVYDRVAANLRSQRSSTVGLII 81 Query: 61 TDFENPFYHQMLTKVEDMLYEQQFTFLLGMSSESREKQERVLETMLEHRVCGIILTPVVD 120 T+ +NPF+ ++L V + L E+ +T +LG + + EKQ+ +L TMLEHRV G+I++PV Sbjct: 82 TELDNPFFSELLVGVHEALDEEGYTVILGTTFDRPEKQDALLSTMLEHRVGGVIMSPVPG 141 Query: 121 TQPTLFNKLRALQIPALLMGREVAGSGA-DYVGTDYRLGSQLAVRHLVEQGHRRIAYIGG 179 + +LR IP +L RE +G DY+G D G +LA HL++QGHRRIA+IGG Sbjct: 142 CSTEMLERLRQWDIPVVLFAREEIPAGQFDYIGIDNVAGGRLATEHLIDQGHRRIAFIGG 201 Query: 180 MLPGNTAYQERIDGYCSALQEYGLEVDPKLIMPTPLNREGGIRAIQEVLKLENPPTACFC 239 P ++ ++ R GY AL+ G++VD L+ P+ R+GG A+++ L+ NPPTA FC Sbjct: 202 S-PLSSVWKARKAGYSEALRAAGIDVDETLLFPSATARQGGRMAVKQALQHPNPPTALFC 260 Query: 240 HNDIIALGVTIGLRLQGLIPGEHMAIVGFDNILETETVEPKLTTVSVFHDQWGVEAARQI 299 +ND++A G +GL+ +GL+PG +A+VGFDNI E+ +P LTTV+ F + G AAR++ Sbjct: 261 YNDVVAFGAMLGLKEEGLVPGRDIAVVGFDNIQESALFQPPLTTVAAFPENIGACAARRL 320 Query: 300 LDRIGGLQSDXXXXXXXXXXXXRKSS 325 +R+ G S+ R+SS Sbjct: 321 HERMEGDDSEPKRMILNPELIVRQSS 346 >A7Z2G3.1 A7Z2G3_BACA2 Putative transcriptional regulator Length = 343 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 143/307 (46%), Positives = 201/307 (65%), Gaps = 1/307 (0%) Query: 1 VADDAGVSRATASLVVRGSKSIKPSTHKKVMDSIEKLGYVYDRVAASFRSQSSSTVGIVI 60 VA+ AGVS +TASL+VR + I +T +KV+ S+ +LGYVYDRVAA+ RSQ+S+TVG++I Sbjct: 14 VAEHAGVSTSTASLIVRNNPRISEATREKVLQSMRELGYVYDRVAANLRSQTSTTVGLII 73 Query: 61 TDFENPFYHQMLTKVEDMLYEQQFTFLLGMSSESREKQERVLETMLEHRVCGIILTPVVD 120 TD N F+ + L V++ L E T LLG + +S KQE+++ TMLEHRV G+IL PV Sbjct: 74 TDISNTFFSEFLIGVQNTLEEVGLTVLLGTTFDSVAKQEQLISTMLEHRVGGLILCPVSG 133 Query: 121 TQPTLFNKLRALQIPALLMGREVAGSGADYVGTDYRLGSQLAVRHLVEQGHRRIAYIGGM 180 T ++L L IP +L RE+A + D+VG DY G+ AVRH +E+GH+ IA++GG+ Sbjct: 134 TAEETLSRLEQLDIPVVLAVREIADADCDFVGADYEEGTYKAVRHFIEKGHQEIAFLGGV 193 Query: 181 LPGNTAYQERIDGYCSALQEYGLEVDPKLIMPTPLNREGGIRAIQEVLKLENPPTACFCH 240 +T + +R+ G+ AL+E LEV ++ + RE G A+ E+L+ PTA FC Sbjct: 194 KHSST-WTKRMKGFKKALREADLEVKNDYVIDSAPTREAGCEAVTELLRRSERPTAIFCF 252 Query: 241 NDIIALGVTIGLRLQGLIPGEHMAIVGFDNILETETVEPKLTTVSVFHDQWGVEAARQIL 300 +D++A GV G+R GLIPGE + IVGFDN+ E E P LTTVS F Q G EAA+ + Sbjct: 253 SDLVAFGVMQGIRKAGLIPGEDIDIVGFDNVPEAEISYPPLTTVSSFPRQSGKEAAQLLH 312 Query: 301 DRIGGLQ 307 +I Q Sbjct: 313 HKITNSQ 319 >A8FJ80.1 A8FJ80_BACP2 LacI family transcriptional regulator Length = 340 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/296 (45%), Positives = 189/296 (63%), Gaps = 1/296 (0%) Query: 1 VADDAGVSRATASLVVRGSKSIKPSTHKKVMDSIEKLGYVYDRVAASFRSQSSSTVGIVI 60 VA AGVS +TASLVVR + I +T KKV+ S+E LGYVYDRVAA+ RS+SS+ VG+++ Sbjct: 14 VAKHAGVSTSTASLVVRNNPRISEATRKKVLQSMEDLGYVYDRVAANMRSKSSNIVGVIV 73 Query: 61 TDFENPFYHQMLTKVEDMLYEQQFTFLLGMSSESREKQERVLETMLEHRVCGIILTPVVD 120 TD N F + L V+ L +T LLG + +S +KQER++ TM+EHRV GIIL P Sbjct: 74 TDISNTFMSEFLIGVQTTLESLGYTVLLGTTFDSVDKQERLISTMVEHRVGGIILNPASK 133 Query: 121 TQPTLFNKLRALQIPALLMGREVAGSGADYVGTDYRLGSQLAVRHLVEQGHRRIAYIGGM 180 + +L ++ P +L RE++ DYVG DY G+ +A+RHL+++GHRRIA++GG+ Sbjct: 134 SSTRTVKQLNQIRTPKVLANRELSDVQCDYVGVDYEQGAWMAIRHLLQKGHRRIAFLGGI 193 Query: 181 LPGNTAYQERIDGYCSALQEYGLEVDPKLIMPTPLNREGGIRAIQEVLKLENPPTACFCH 240 +T + ER+ G+ A E L +D LI+ REGG A+ +V+ PPTA FC Sbjct: 194 KTSST-WIERMKGFKKAHDEENLTIDDSLIIDIEPTREGGKEALAQVMDQPEPPTAIFCF 252 Query: 241 NDIIALGVTIGLRLQGLIPGEHMAIVGFDNILETETVEPKLTTVSVFHDQWGVEAA 296 +D++A GV L + + PGE + +VGFDN+ E E P LTTVS F GV+AA Sbjct: 253 SDLVAFGVIQELSARDIKPGEDIDVVGFDNVPEAEMYHPPLTTVSSFPRSIGVKAA 308 >B4AK33.1 B4AK33_BACPU LacI family transcriptional regulator Length = 339 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 135/296 (45%), Positives = 189/296 (63%), Gaps = 1/296 (0%) Query: 1 VADDAGVSRATASLVVRGSKSIKPSTHKKVMDSIEKLGYVYDRVAASFRSQSSSTVGIVI 60 VA AGVS +TASLVVR + I +T KKV+ S+E LGYVYDRVAA+ RS+SS+ VG+++ Sbjct: 14 VAKHAGVSTSTASLVVRNNPRISEATRKKVLQSMEDLGYVYDRVAANMRSKSSNIVGVIV 73 Query: 61 TDFENPFYHQMLTKVEDMLYEQQFTFLLGMSSESREKQERVLETMLEHRVCGIILTPVVD 120 TD N F + L V+ L +T LLG + +S +KQER++ TM+EHRV GIIL P Sbjct: 74 TDISNTFISEFLIGVQTTLESLGYTVLLGTTFDSVDKQERLISTMVEHRVGGIILNPASK 133 Query: 121 TQPTLFNKLRALQIPALLMGREVAGSGADYVGTDYRLGSQLAVRHLVEQGHRRIAYIGGM 180 + +L ++ P +L RE++ DYVG DY G+ +A+RHL+++GHRRIA++GG+ Sbjct: 134 SSARTVKQLNQIRTPKVLANRELSDVQCDYVGVDYEQGAWMAIRHLLQKGHRRIAFLGGI 193 Query: 181 LPGNTAYQERIDGYCSALQEYGLEVDPKLIMPTPLNREGGIRAIQEVLKLENPPTACFCH 240 +T + ER+ G+ A E L +D LI+ REGG A+ +V+ PPTA FC Sbjct: 194 KTSST-WIERMKGFKKAHDEENLMIDDSLIIDIEPTREGGKEALAQVIDQPEPPTAIFCF 252 Query: 241 NDIIALGVTIGLRLQGLIPGEHMAIVGFDNILETETVEPKLTTVSVFHDQWGVEAA 296 +D++A GV L + + PGE + +VGFDN+ E E P LTTVS F GV+AA Sbjct: 253 SDLVAFGVIQELSARDIKPGEDIDVVGFDNVPEAEMYHPPLTTVSSFPRSIGVKAA 308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,859,193,010 Number of extensions: 75004697 Number of successful extensions: 219495 Number of sequences better than 1.0e-05: 8700 Number of HSP's gapped: 206507 Number of HSP's successfully gapped: 8702 Length of query: 336 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 200 Effective length of database: 1,779,438,163 Effective search space: 355887632600 Effective search space used: 355887632600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)