BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0039.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z601.1 C0Z601_BREBN Putative uncharacterized protein 422 e-116 C2WA78.1 C2WA78_BACCE Putative uncharacterized protein 410 e-113 C3P221.1 C3P221_BACAA Putative uncharacterized protein 404 e-111 C3LCF8.1 C3LCF8_BACAC Putative uncharacterized protein 404 e-111 Q81N81.1 Q81N81_BACAN Putative uncharacterized protein 404 e-111 >C0Z601.1 C0Z601_BREBN Putative uncharacterized protein Length = 235 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/235 (84%), Positives = 215/235 (91%) Query: 1 MNLEMVMQELEALGKERTKKIYQSNGAHEPLFGVATGQMKPIAKKIKINQPLAEQLYATG 60 M++ MVMQELEALGKERTKKIY SNGAHEPLFGVATG MKPIA+KIKINQPLAEQLYATG Sbjct: 1 MDVGMVMQELEALGKERTKKIYLSNGAHEPLFGVATGAMKPIARKIKINQPLAEQLYATG 60 Query: 61 NYDAMYFAGIIADPQAMTEADFERWIDGAYFYMLSDYVVAVTLAEADIAQEVADKWIASG 120 NYDAMYFAG+IADP+AMT+ADF+RW+D AYFYMLSDYVVAVTL+EADIAQEVAD+WI SG Sbjct: 61 NYDAMYFAGVIADPKAMTKADFDRWMDSAYFYMLSDYVVAVTLSEADIAQEVADQWITSG 120 Query: 121 EELRMSAGWSCYCWLLGNRPDDEFSETKLAHMLEIVKHTIHDSPERTKYAMNNFIYTVGV 180 EELRMSAGWSCYCWLLGNRPD EFS TKLA+MLE VK TIHD+PERTKYAMN FIYTVG Sbjct: 121 EELRMSAGWSCYCWLLGNRPDHEFSVTKLANMLETVKKTIHDAPERTKYAMNQFIYTVGT 180 Query: 181 SYVPLHEAAVETAKTVGPVEVQKDKKKSSFLLASERIQKAVSKGELGFKRKHVRC 235 SY+PLH+ AVE AK VGPVEVQKDK KS FL A + IQKAVSK +LGFKRKHVRC Sbjct: 181 SYLPLHDKAVEIAKEVGPVEVQKDKAKSKFLNAYDHIQKAVSKDQLGFKRKHVRC 235 >C2WA78.1 C2WA78_BACCE Putative uncharacterized protein Length = 235 Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust. Identities = 189/235 (80%), Positives = 215/235 (91%) Query: 1 MNLEMVMQELEALGKERTKKIYQSNGAHEPLFGVATGQMKPIAKKIKINQPLAEQLYATG 60 M+ E VMQELEALGKERTKKIY SNGAH+PLFGVATG MKPIAKKIKINQ LAE+LY+TG Sbjct: 1 MDFETVMQELEALGKERTKKIYISNGAHDPLFGVATGAMKPIAKKIKINQRLAEELYSTG 60 Query: 61 NYDAMYFAGIIADPQAMTEADFERWIDGAYFYMLSDYVVAVTLAEADIAQEVADKWIASG 120 NYDAMYFAGIIADP+AM+E+DF+RW+D AYFYMLSDYVVAVTL+E+D AQ++ADKWIASG Sbjct: 61 NYDAMYFAGIIADPKAMSESDFDRWMDEAYFYMLSDYVVAVTLSESDFAQDIADKWIASG 120 Query: 121 EELRMSAGWSCYCWLLGNRPDDEFSETKLAHMLEIVKHTIHDSPERTKYAMNNFIYTVGV 180 +ELRMSAGWSCYCWLLGNR D+EFSE+K++ MLEIVK+TIHDSPERTK AMN F+YTVG+ Sbjct: 121 DELRMSAGWSCYCWLLGNRQDNEFSESKISSMLEIVKNTIHDSPERTKSAMNTFLYTVGI 180 Query: 181 SYVPLHEAAVETAKTVGPVEVQKDKKKSSFLLASERIQKAVSKGELGFKRKHVRC 235 SY+PLHE AVETAK VG VEV++DKKKSSFL ASE I K + +G LGFKRKHVRC Sbjct: 181 SYLPLHEKAVETAKEVGIVEVKRDKKKSSFLNASESIYKEIDRGRLGFKRKHVRC 235 >C3P221.1 C3P221_BACAA Putative uncharacterized protein Length = 235 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/235 (79%), Positives = 214/235 (91%) Query: 1 MNLEMVMQELEALGKERTKKIYQSNGAHEPLFGVATGQMKPIAKKIKINQPLAEQLYATG 60 M+ + VMQELEALGKERTKKIY SNGAHEP+FGVATG MKPIAKKIK+NQ LAE+LYATG Sbjct: 1 MDFKTVMQELEALGKERTKKIYISNGAHEPVFGVATGAMKPIAKKIKVNQELAEELYATG 60 Query: 61 NYDAMYFAGIIADPQAMTEADFERWIDGAYFYMLSDYVVAVTLAEADIAQEVADKWIASG 120 NYDAMYFAGIIADP+AM+E+DF+RWIDGAYFYMLSDYVVAVTL+E++IAQEVADKWIASG Sbjct: 61 NYDAMYFAGIIADPKAMSESDFDRWIDGAYFYMLSDYVVAVTLSESNIAQEVADKWIASG 120 Query: 121 EELRMSAGWSCYCWLLGNRPDDEFSETKLAHMLEIVKHTIHDSPERTKYAMNNFIYTVGV 180 EEL+MSAGWSCYCWLLGNR D+EFSE+K++ MLE++K+TIHDSPERTK AMNNF+ TV + Sbjct: 121 EELKMSAGWSCYCWLLGNRKDNEFSESKISDMLEMLKNTIHDSPERTKSAMNNFLNTVAI 180 Query: 181 SYVPLHEAAVETAKTVGPVEVQKDKKKSSFLLASERIQKAVSKGELGFKRKHVRC 235 SYVPLHE AVE AK VG VEV++D KKSS L ASE IQK + +G LGFKRK+VRC Sbjct: 181 SYVPLHEKAVEIAKEVGIVEVKRDNKKSSLLNASESIQKELDRGRLGFKRKYVRC 235 >C3LCF8.1 C3LCF8_BACAC Putative uncharacterized protein Length = 235 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/235 (79%), Positives = 214/235 (91%) Query: 1 MNLEMVMQELEALGKERTKKIYQSNGAHEPLFGVATGQMKPIAKKIKINQPLAEQLYATG 60 M+ + VMQELEALGKERTKKIY SNGAHEP+FGVATG MKPIAKKIK+NQ LAE+LYATG Sbjct: 1 MDFKTVMQELEALGKERTKKIYISNGAHEPVFGVATGAMKPIAKKIKVNQELAEELYATG 60 Query: 61 NYDAMYFAGIIADPQAMTEADFERWIDGAYFYMLSDYVVAVTLAEADIAQEVADKWIASG 120 NYDAMYFAGIIADP+AM+E+DF+RWIDGAYFYMLSDYVVAVTL+E++IAQEVADKWIASG Sbjct: 61 NYDAMYFAGIIADPKAMSESDFDRWIDGAYFYMLSDYVVAVTLSESNIAQEVADKWIASG 120 Query: 121 EELRMSAGWSCYCWLLGNRPDDEFSETKLAHMLEIVKHTIHDSPERTKYAMNNFIYTVGV 180 EEL+MSAGWSCYCWLLGNR D+EFSE+K++ MLE++K+TIHDSPERTK AMNNF+ TV + Sbjct: 121 EELKMSAGWSCYCWLLGNRKDNEFSESKISDMLEMLKNTIHDSPERTKSAMNNFLNTVAI 180 Query: 181 SYVPLHEAAVETAKTVGPVEVQKDKKKSSFLLASERIQKAVSKGELGFKRKHVRC 235 SYVPLHE AVE AK VG VEV++D KKSS L ASE IQK + +G LGFKRK+VRC Sbjct: 181 SYVPLHEKAVEIAKEVGIVEVKRDNKKSSLLNASESIQKELDRGRLGFKRKYVRC 235 >Q81N81.1 Q81N81_BACAN Putative uncharacterized protein Length = 235 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/235 (79%), Positives = 214/235 (91%) Query: 1 MNLEMVMQELEALGKERTKKIYQSNGAHEPLFGVATGQMKPIAKKIKINQPLAEQLYATG 60 M+ + VMQELEALGKERTKKIY SNGAHEP+FGVATG MKPIAKKIK+NQ LAE+LYATG Sbjct: 1 MDFKTVMQELEALGKERTKKIYISNGAHEPVFGVATGAMKPIAKKIKVNQELAEELYATG 60 Query: 61 NYDAMYFAGIIADPQAMTEADFERWIDGAYFYMLSDYVVAVTLAEADIAQEVADKWIASG 120 NYDAMYFAGIIADP+AM+E+DF+RWIDGAYFYMLSDYVVAVTL+E++IAQEVADKWIASG Sbjct: 61 NYDAMYFAGIIADPKAMSESDFDRWIDGAYFYMLSDYVVAVTLSESNIAQEVADKWIASG 120 Query: 121 EELRMSAGWSCYCWLLGNRPDDEFSETKLAHMLEIVKHTIHDSPERTKYAMNNFIYTVGV 180 EEL+MSAGWSCYCWLLGNR D+EFSE+K++ MLE++K+TIHDSPERTK AMNNF+ TV + Sbjct: 121 EELKMSAGWSCYCWLLGNRKDNEFSESKISDMLEMLKNTIHDSPERTKSAMNNFLNTVAI 180 Query: 181 SYVPLHEAAVETAKTVGPVEVQKDKKKSSFLLASERIQKAVSKGELGFKRKHVRC 235 SYVPLHE AVE AK VG VEV++D KKSS L ASE IQK + +G LGFKRK+VRC Sbjct: 181 SYVPLHEKAVEIAKEVGIVEVKRDNKKSSLLNASESIQKELDRGRLGFKRKYVRC 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,356,177,491 Number of extensions: 52886973 Number of successful extensions: 129128 Number of sequences better than 1.0e-05: 224 Number of HSP's gapped: 128910 Number of HSP's successfully gapped: 224 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)