BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0036.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B6FZV2.1 B6FZV2_9CLOT Putative uncharacterized protein 167 6e-40 B0PEK5.1 B0PEK5_9FIRM Putative uncharacterized protein 166 1e-39 B1IGW4.1 B1IGW4_CLOBK Transcriptional regulator, TetR family 162 1e-38 C1FQK7.1 C1FQK7_CLOBJ Transcriptional regulator, TetR family 162 2e-38 A7GFF2.1 A7GFF2_CLOBL Transcriptional regulator, TetR family 162 2e-38 >B6FZV2.1 B6FZV2_9CLOT Putative uncharacterized protein Length = 196 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 119/191 (62%), Gaps = 2/191 (1%) Query: 8 MKEKPYHHGNLRKQLIETGISLINEEGVKSFSLRRVAAQCNVSHTAPYSHFKNVDELIAA 67 MK YHH NL+ +LIE GI L+N+ GV+ SLR+VA CNVSH+APYSHFKN DELI+A Sbjct: 1 MKNSTYHHINLKNELIEKGIDLVNKYGVEQLSLRKVAQVCNVSHSAPYSHFKNKDELISA 60 Query: 68 MGEHVTEQFMERLRISIMGEEDSREAISLLGQAYVDFFIENPQYFQFLYYHSGIIIDLD- 126 M +++T+QF E+L ++ + + G+ Y+ FF+ENPQYF FL+ + I IDLD Sbjct: 61 MQKYITDQFSEKLLNTVSLYSNQSNFLLEFGKTYILFFLENPQYFSFLFTQNSISIDLDI 120 Query: 127 -NYSSDNYPPFALFRTTAFHMFRSTGLPEASYSHQLIVLWSMVHGIASLLTNNGVRYSGN 185 +++ +NY PF +++ S + + + +I L++ +HGI SL T VR++ + Sbjct: 121 NSFTEENYKPFLIYKEQLLKQLASLNISDEKKQNYIISLFAYIHGITSLATMENVRHTFD 180 Query: 186 WRDSFSILTVL 196 W L L Sbjct: 181 WSKKLDDLICL 191 >B0PEK5.1 B0PEK5_9FIRM Putative uncharacterized protein Length = 206 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 9 KEKPYHHGNLRKQLIETGISLINEEGVKSFSLRRVAAQCNVSHTAPYSHFKNVDELIAAM 68 K + YHH +LR LIETGI L++ EG+ +FSLR+VAA C VSH APYSHF+N +EL+ AM Sbjct: 4 KRQTYHHKDLRNALIETGIQLVSTEGINAFSLRKVAAACGVSHAAPYSHFQNKEELLEAM 63 Query: 69 GEHVTEQFMERLRISIMGEEDSREAISLLGQAYVDFFIENPQYFQFLYYHSGIIIDLDNY 128 +T++F ++L ++ + E + +G AYV FF+EN YFQFLY S I IDL Sbjct: 64 QLFITDRFSKQLESTVQKNNNVAEILKDMGIAYVSFFVENSAYFQFLYSQSNIKIDLSLS 123 Query: 129 SSD--NYPPFALFRTTAFHMFRSTGLPEASYSHQLIVLWSMVHGIASLLTNNGVRYSGNW 186 D NY P+ +++ + T E + +I +W+ +HG+ SL T N V Y+ +W Sbjct: 124 IPDDQNYKPYIIYKNIVSKLLEQTHYSEEKQNDIIITIWAFIHGVTSLATMNNVNYNNDW 183 Query: 187 RD 188 R+ Sbjct: 184 RE 185 >B1IGW4.1 B1IGW4_CLOBK Transcriptional regulator, TetR family Length = 197 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 116/185 (62%), Gaps = 4/185 (2%) Query: 8 MKEKPYHHGNLRKQLIETGISLINEEGVKSFSLRRVAAQCNVSHTAPYSHFKNVDELIAA 67 M YHHG+L++ LI G+ L NEEG FSLR+VAA CNVSH+APY HFKN +ELI A Sbjct: 1 MASDTYHHGDLKESLIIEGLKLFNEEGADKFSLRKVAALCNVSHSAPYKHFKNKEELINA 60 Query: 68 MGEHVTEQFMERLR-ISIMGEEDSREAISLLGQAYVDFFIENPQYFQFLYYHS---GIII 123 + ++V +F + LR IS M ++D + I LG+ YV F +ENP Y +FL+ ++ II+ Sbjct: 61 ISQYVFSEFEKSLREISEMYKDDPYKKIMELGKKYVWFMVENPDYLKFLFLNNHKYEIIV 120 Query: 124 DLDNYSSDNYPPFALFRTTAFHMFRSTGLPEASYSHQLIVLWSMVHGIASLLTNNGVRYS 183 + + + F LF+ +A +S + E YS +I +WSMVHGIA +L N YS Sbjct: 121 EENKLETKILGAFGLFKNSAIEYLKSINVKEEEYSQDVIAMWSMVHGIAVMLANKTFIYS 180 Query: 184 GNWRD 188 GN+ + Sbjct: 181 GNYLE 185 >C1FQK7.1 C1FQK7_CLOBJ Transcriptional regulator, TetR family Length = 197 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 115/183 (62%), Gaps = 4/183 (2%) Query: 8 MKEKPYHHGNLRKQLIETGISLINEEGVKSFSLRRVAAQCNVSHTAPYSHFKNVDELIAA 67 M YHHG+L++ LI G+ L NEEG FSLR+VAA CNVSH+APY HFKN +ELI A Sbjct: 1 MASDTYHHGDLKESLIIEGLKLFNEEGADKFSLRKVAALCNVSHSAPYKHFKNKEELINA 60 Query: 68 MGEHVTEQFMERLR-ISIMGEEDSREAISLLGQAYVDFFIENPQYFQFLYYHS---GIII 123 + ++V +F + LR IS M ++D + I LG+ YV F +ENP Y +FL+ ++ II+ Sbjct: 61 ISQYVFSEFEKSLREISEMYKDDPYKKIMELGKKYVWFMVENPDYLKFLFLNNHKYEIIV 120 Query: 124 DLDNYSSDNYPPFALFRTTAFHMFRSTGLPEASYSHQLIVLWSMVHGIASLLTNNGVRYS 183 + + + F LF+ +A +S + E YS +I +WSMVHGIA +L N YS Sbjct: 121 EENKLETKISGAFGLFKNSAIEYLKSINVKEEEYSQDVIAMWSMVHGIAVMLANKTFIYS 180 Query: 184 GNW 186 GN+ Sbjct: 181 GNY 183 >A7GFF2.1 A7GFF2_CLOBL Transcriptional regulator, TetR family Length = 197 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 115/183 (62%), Gaps = 4/183 (2%) Query: 8 MKEKPYHHGNLRKQLIETGISLINEEGVKSFSLRRVAAQCNVSHTAPYSHFKNVDELIAA 67 M YHHG+L++ LI G+ L NEEG FSLR+VAA CNVSH+APY HFKN +ELI A Sbjct: 1 MASDTYHHGDLKESLIIEGLKLFNEEGADKFSLRKVAALCNVSHSAPYKHFKNKEELINA 60 Query: 68 MGEHVTEQFMERLR-ISIMGEEDSREAISLLGQAYVDFFIENPQYFQFLYYHS---GIII 123 + ++V +F + LR IS M ++D + I LG+ YV F +ENP Y +FL+ ++ II+ Sbjct: 61 ISQYVFSEFEKSLREISEMYKDDPYKKIMELGKKYVWFMVENPDYLKFLFLNNHKYEIIV 120 Query: 124 DLDNYSSDNYPPFALFRTTAFHMFRSTGLPEASYSHQLIVLWSMVHGIASLLTNNGVRYS 183 + + + F LF+ +A +S + E YS +I +WSMVHGIA +L N YS Sbjct: 121 EENKLETKISGAFGLFKNSAIEYLKSINVKEEEYSQDVIAMWSMVHGIAVMLANKTFIYS 180 Query: 184 GNW 186 GN+ Sbjct: 181 GNY 183 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,211,053,433 Number of extensions: 46633847 Number of successful extensions: 123886 Number of sequences better than 1.0e-05: 363 Number of HSP's gapped: 124077 Number of HSP's successfully gapped: 363 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)