BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0034.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D724.1 B1D724_9BACL Transcriptional regulator, AraC family 164 4e-39 C3HB28.1 C3HB28_BACTU Transcriptional regulator, AraC 138 4e-31 C2XLP3.1 C2XLP3_BACCE Transcriptional regulator, AraC 137 5e-31 C2Y3L5.1 C2Y3L5_BACCE Transcriptional regulator, AraC 134 7e-30 B1DAL5.1 B1DAL5_9BACL Transcriptional regulator, AraC family 128 4e-28 >B1D724.1 B1D724_9BACL Transcriptional regulator, AraC family Length = 323 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 132/209 (63%), Gaps = 1/209 (0%) Query: 6 SEQISYDNPLQPVRVLHEFRNEEVRGKWHYHNELELIAVVRGEFSIHTKDRVFRMSAGDV 65 +E++ Y+NPL +RV R ++ WHYH +LEL+ +++G + ++ + + GD+ Sbjct: 40 NEKVVYENPLLSLRVWQPIRKDDDFTNWHYHRQLELLYIIKGRLDVDVEEESYHLEPGDI 99 Query: 66 AIIGSFEPHHSFKDEGVMEYIVLQFDIFKYLGQDLLSYMKYFTEAGRLYSKLNYIFTENP 125 +IG+ + H K G ++YIVLQF++ + Q ++YM+YF+E S NYIF EN Sbjct: 100 IMIGASQLHRD-KSVGHLDYIVLQFELEPFFDQSTIAYMRYFSETENPLSMANYIFQENG 158 Query: 126 KVKQQIFNHIREISKEYAQRQKGYEIAIHSLIYRIILALFRNDTSSFMELKNDSELIKLL 185 KVK+QI ++IR++ E +++ GYEIA+ LI +I+L L RND + ++D + ++L Sbjct: 159 KVKKQIGDYIRQLHHEAERKETGYEIAVSVLIKQILLTLLRNDNRKMLAEQDDFDRLRLK 218 Query: 186 PVLDYIEKNINGRVDMKEAAKLMNLDYFY 214 PVLDY+E + R+ ++E ++ N+ Y+Y Sbjct: 219 PVLDYVENRLTDRIQVEEVCRIANMSYYY 247 >C3HB28.1 C3HB28_BACTU Transcriptional regulator, AraC Length = 309 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 5 ISEQISYDNPLQPVRVLH-----EFRNEEVRGKWHYHNELELIAVVRGEFSIHTKDRVFR 59 I E+++Y NPL ++V + ++ WHYH E+E +A++ G I KD+ Sbjct: 13 IEEKVTYQNPLLFLKVWDIVMETSYYDQIESAPWHYHEEIEFLAIIEGYLGIQNKDKYIV 72 Query: 60 MSAGDVAIIGSFEPHHSFKDEG-VMEYIVLQFDIFKYLGQDLLSYMKYFTEAGRLYSKLN 118 + GDV I+G E H S K + YIV Q ++ ++ + ++ Y+ F+E + ++LN Sbjct: 73 LGPGDVFILGKSELHRSHKASADSLHYIVFQVNLKQHFDRSIIQYLHCFSEQTKSLNELN 132 Query: 119 YIFTENPKVKQQIFNHIREISKEYAQRQKGYEIAIHSLIYRIILALFRNDTSSFMELKND 178 YIF +N VK + + I EI E ++ GYEIAI + I +++L L RNDT + + Sbjct: 133 YIFEQNKVVKHEAYALIIEIFTESKKKINGYEIAISAAIKKLLLILVRNDTHNILNYSEQ 192 Query: 179 SELIKLLPVLDYIEKNINGRVDMKEAAKLMNLDYFY 214 +L +L PVLDY+E +I ++ + +A L+NL Y Y Sbjct: 193 DDLARLKPVLDYVEDHIGEKITVTKACALINLSYHY 228 >C2XLP3.1 C2XLP3_BACCE Transcriptional regulator, AraC Length = 309 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 5 ISEQISYDNPLQPVRVLH-----EFRNEEVRGKWHYHNELELIAVVRGEFSIHTKDRVFR 59 I E+++Y NPL ++V + ++ WHYH E+E +A++ G I KD+ Sbjct: 13 IEEKVTYQNPLLFLKVWDIVMETSYYDQIESAPWHYHEEIEFLAIIEGYLGIQNKDKYIV 72 Query: 60 MSAGDVAIIGSFEPHHSFKDEG-VMEYIVLQFDIFKYLGQDLLSYMKYFTEAGRLYSKLN 118 + GDV I+G E H S K + YIV Q ++ ++ + ++ Y+ F+E + ++LN Sbjct: 73 LGPGDVFILGKSELHRSHKASADSLHYIVFQVNLKQHFDRSIIQYLHCFSEQTKSLNELN 132 Query: 119 YIFTENPKVKQQIFNHIREISKEYAQRQKGYEIAIHSLIYRIILALFRNDTSSFMELKND 178 YIF +N VK + + I EI E ++ GYEIAI + I +++L L RNDT + + Sbjct: 133 YIFEQNEVVKHEAYALIIEIFTESKKKINGYEIAISAAIKKLLLILVRNDTHNILNYSEQ 192 Query: 179 SELIKLLPVLDYIEKNINGRVDMKEAAKLMNLDYFY 214 +L +L PVLDY+E +I ++ + +A L+NL Y Y Sbjct: 193 DDLARLKPVLDYVEDHIGEKITVTKACALINLSYHY 228 >C2Y3L5.1 C2Y3L5_BACCE Transcriptional regulator, AraC Length = 315 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 122/220 (55%), Gaps = 6/220 (2%) Query: 1 MAGHISEQISYDNPLQPVRVLH-----EFRNEEVRGKWHYHNELELIAVVRGEFSIHTKD 55 +A I E++ Y NPL ++V + N+ WHYH E+E +A++ G+ I KD Sbjct: 9 LAEAIEEKVIYQNPLLFLKVWDIVMETSYNNQIESAPWHYHEEIEFLAIIEGDLGIQNKD 68 Query: 56 RVFRMSAGDVAIIGSFEPHHSFK-DEGVMEYIVLQFDIFKYLGQDLLSYMKYFTEAGRLY 114 + + GDV I G E H S K G + Y+V Q ++ ++ + ++ Y+ F+E + Sbjct: 69 KYIVLGPGDVFIFGKSELHRSHKPSAGSLHYVVFQVNLKQHFDRSIIQYLHCFSEQTKSL 128 Query: 115 SKLNYIFTENPKVKQQIFNHIREISKEYAQRQKGYEIAIHSLIYRIILALFRNDTSSFME 174 ++LNYIF +N VK + + I EI E + GYEIAI + I +++L L RNDT + + Sbjct: 129 NELNYIFEQNEVVKHEAYVLITEIFTESKMKMNGYEIAISAAIKKLLLLLVRNDTHNILN 188 Query: 175 LKNDSELIKLLPVLDYIEKNINGRVDMKEAAKLMNLDYFY 214 + +L PVLDY+E ++ ++ + +A L+NL Y Y Sbjct: 189 YSEQDDFARLKPVLDYVEDHLGEKITVTKACALINLSYHY 228 >B1DAL5.1 B1DAL5_9BACL Transcriptional regulator, AraC family Length = 300 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 6/213 (2%) Query: 7 EQISYDNPLQPVRVLHEFRNEEVRG----KWHYHNELELIAVVRGEFSIHTKDRVFRMSA 62 E I Y N ++ +F +E G +WHYH E+ELI V G + HT + + A Sbjct: 16 EPIHYQNQHLCIKAW-QFTDESKPGPSNRRWHYHKEVELILVQDGSMNFHTPGHCYALDA 74 Query: 63 GDVAIIGSFEPHHSFK-DEGVMEYIVLQFDIFKYLGQDLLSYMKYFTEAGRLYSKLNYIF 121 GDVAI+GS E H S K +G + YIVL D+ +Y ++ Y ++F+E R +LNYIF Sbjct: 75 GDVAIVGSSELHLSQKTSDGPLIYIVLHVDLQRYFDPAMMMYYRHFSELIRPLEELNYIF 134 Query: 122 TENPKVKQQIFNHIREISKEYAQRQKGYEIAIHSLIYRIILALFRNDTSSFMELKNDSEL 181 EN ++++ + +I +E +KGYEIA I ++L L R+D+ ++ + Sbjct: 135 RENTAARREMAGILTDIHEEMIGMRKGYEIAASMHIKHLLLTLLRHDSRGLLQSYEFVDD 194 Query: 182 IKLLPVLDYIEKNINGRVDMKEAAKLMNLDYFY 214 + PVLDY+ ++++ R+DM E +++ ++Y Y Sbjct: 195 AVMRPVLDYVSRHLSERIDMDEVSRIARMNYSY 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.141 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,245,858,979 Number of extensions: 49430298 Number of successful extensions: 138180 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 138237 Number of HSP's successfully gapped: 32 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)