BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0342.0033.p
         (77 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D724.1 B1D724_9BACL Transcriptional regulator, AraC family           84   3e-15
C2Y3L5.1 C2Y3L5_BACCE Transcriptional regulator, AraC                  71   3e-11
C3HB28.1 C3HB28_BACTU Transcriptional regulator, AraC                  69   2e-10
C2XLP3.1 C2XLP3_BACCE Transcriptional regulator, AraC                  69   2e-10
B1DAL5.1 B1DAL5_9BACL Transcriptional regulator, AraC family           63   8e-09

>B1D724.1 B1D724_9BACL Transcriptional regulator, AraC family
          Length = 323

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 50/62 (80%)

Query: 1   MGRTFIEYVNHKKIVNAELILLTRDISVLETASLVGMPNMANFYKIFYKYNQCSPKEFRR 60
           +G +F E+VN++KI  AE ILLT+D+S+ E    +GMPNMA+FYK+F KYN CSPK+F+R
Sbjct: 256 IGMSFTEFVNYRKIKWAERILLTKDLSITEVGERIGMPNMAHFYKMFKKYNDCSPKQFQR 315

Query: 61  KL 62
           K+
Sbjct: 316 KM 317


>C2Y3L5.1 C2Y3L5_BACCE Transcriptional regulator, AraC
          Length = 315

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 47/65 (72%)

Query: 1   MGRTFIEYVNHKKIVNAELILLTRDISVLETASLVGMPNMANFYKIFYKYNQCSPKEFRR 60
           MG +F++YVN+K+I  AE +L+T D+S+ +    VG+ NM+ FYK+F K N C PKEF++
Sbjct: 237 MGISFLDYVNYKRIKQAESLLITSDLSITDVGCEVGIANMSQFYKLFKKENNCLPKEFKQ 296

Query: 61  KLHGI 65
           ++  I
Sbjct: 297 RIQSI 301


>C3HB28.1 C3HB28_BACTU Transcriptional regulator, AraC
          Length = 309

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 1   MGRTFIEYVNHKKIVNAELILLTRDISVLETASLVGMPNMANFYKIFYKYNQCSPKEFRR 60
           MG +F++YVN+K+I  AE +L+T D+S+      VG+ NM+ FYK+F K N C PKEF++
Sbjct: 237 MGISFLDYVNYKRIKQAESLLITSDLSISNVGCEVGIANMSQFYKLFKKENNCLPKEFKQ 296

Query: 61  KLHG 64
           ++  
Sbjct: 297 RIQS 300


>C2XLP3.1 C2XLP3_BACCE Transcriptional regulator, AraC
          Length = 309

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 1   MGRTFIEYVNHKKIVNAELILLTRDISVLETASLVGMPNMANFYKIFYKYNQCSPKEFRR 60
           MG +F++YVN+K+I  AE +L+T D+S+      VG+ NM+ FYK+F K N C PKEF++
Sbjct: 237 MGISFLDYVNYKRIKQAESLLITSDLSISNVGCEVGIANMSQFYKLFKKENNCLPKEFKQ 296

Query: 61  KLHG 64
           ++  
Sbjct: 297 RIQS 300


>B1DAL5.1 B1DAL5_9BACL Transcriptional regulator, AraC family
          Length = 300

 Score = 63.2 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query: 1   MGRTFIEYVNHKKIVNAELILLTRDISVLETASLVGMPNMANFYKIFYKYNQCSPKEFRR 60
           +G +F++YVN ++I+ A  +L+    SV   A+ VG+ NMA+FY++F +YN C+PKE+ R
Sbjct: 236 VGVSFVDYVNRQRILKAAHMLVAEPASVSSIAASVGIENMAHFYELFKRYNGCTPKEYAR 295

Query: 61  KL 62
           +L
Sbjct: 296 RL 297


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 383,839,043
Number of extensions: 10914403
Number of successful extensions: 44772
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 44789
Number of HSP's successfully gapped: 6
Length of query: 77
Length of database: 3,060,696,203
Length adjustment: 48
Effective length of query: 29
Effective length of database: 2,608,487,483
Effective search space: 75646137007
Effective search space used: 75646137007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)