BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0028.p (517 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LRE9.1 A6LRE9_CLOB8 Putative uncharacterized protein 593 e-167 B8I665.1 B8I665_CLOCE Putative uncharacterized protein 187 2e-45 B2TJM5.1 B2TJM5_CLOBB Putative membrane protein 77 3e-12 B2V531.1 B2V531_CLOBA Dolichyl-phosphate-mannose-protein mannosy... 74 5e-11 Q6HMU0.1 Q6HMU0_BACHK Putative uncharacterized protein 73 6e-11 >A6LRE9.1 A6LRE9_CLOB8 Putative uncharacterized protein Length = 526 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 293/510 (57%), Positives = 367/510 (71%), Gaps = 1/510 (0%) Query: 1 MVKRIQRTLYVILAFFIGLFIASSFFLRAEYNYFAYGDTPVLAKQKLVLFMXXXXXXXXX 60 M I++ +Y+I FFIGLFIASSFF+RA+YN F YGD PVL QKL +F+ Sbjct: 1 MSALIKKIIYLIFTFFIGLFIASSFFVRAKYNTFLYGDKPVLQNQKLGIFIFMILILVLL 60 Query: 61 XXXXYRMCLKLDKYSPRIVIPATLLFSCAIQIVIIFLFTRLPTDDSQTVLSLARDMLYRN 120 YRMCLKL++YS +IVIP TL+FS IQ++IIFLFT+LPT DSQTVLSLA +MLYRN Sbjct: 61 SVDLYRMCLKLNRYSKKIVIPVTLVFSFIIQMIIIFLFTKLPTADSQTVLSLALNMLYRN 120 Query: 121 DYSSFDTSGYLHMFPFQFSIVLYLKTLLYLFPDNYLVIKSFNILFSLVTTLMIYLLYKEL 180 DYSSF +SGYL+MFPF FS VLYLKTLL +FP+NYLV+K FNILF+LVT+L+IY +YKE+ Sbjct: 121 DYSSFQSSGYLYMFPFNFSTVLYLKTLLTIFPNNYLVLKIFNILFTLVTSLIIYYIYKEI 180 Query: 181 NPTSKRQDYGVLVFAATYLPSLFMSNLIYNDVIATAFLTSALYFAVRFTRTTSYKDILLT 240 N S+ DYGVL+FA+TY+PSLFMSN IYND+IAT LTS++YF +RF + S K I++ Sbjct: 181 NYKSRDNDYGVLIFASTYIPSLFMSNYIYNDIIATTLLTSSIYFLIRFVKDGSIKYIVIA 240 Query: 241 AILLAAGNYFRSIGXXXXXXXXXXXXXHMRTLGWKKVIPPVILTVLLFNVPGWTQNAVLQ 300 ++ L+ GNYFRS+G ++ G KK I + +LFN+P W QN +LQ Sbjct: 241 SVCLSIGNYFRSVGTIVLIAAVFYILLQVKKTGVKKAITSFCILGVLFNIPNWNQNFILQ 300 Query: 301 GTHTVEESPNQNSAPVYMWLNMGVNLETFGFWDNRESYSIYQQDAGYNKAESTRLFKASI 360 T+ V ES N+NSAP+YMW+NMG+N +T G+WDN +SY+IYQ+ A YNK +ST LFK I Sbjct: 301 ETNIVNESVNKNSAPIYMWINMGMNEDTIGYWDNMKSYNIYQRQARYNKEKSTELFKEEI 360 Query: 361 ADKFSKATAGELVNMYYKKLIWTWTEGTYQIERYXXXXXXXXXXXXXXXFVMDRYVYTTF 420 +K S L MYY K+IWTWTEGTYQIE + Y Y TF Sbjct: 361 KNKLSNMGFTSLSKMYYDKIIWTWTEGTYQIETFGIGNEAVSSSQRVGR-EEKVYSYNTF 419 Query: 421 ASDWFKGDSNARSGLLWTLYVLNILMYACILVRLIGGIKAKRYAETPLILVILGFIGFYL 480 A++ FKGDS RSGLLW LYV+N LMY I +R+IG IK K++ E L+LV LGFIGFY+ Sbjct: 420 ATELFKGDSVYRSGLLWILYVMNFLMYCFIFIRMIGVIKEKKFDEVLLVLVFLGFIGFYV 479 Query: 481 LWEIKSRYIYPVYPLLIVFSYMGFKDVYDY 510 LWEIKSRYIYP YP+LI+ SYMGFKDVY++ Sbjct: 480 LWEIKSRYIYPTYPILIILSYMGFKDVYEF 509 >B8I665.1 B8I665_CLOCE Putative uncharacterized protein Length = 513 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/467 (27%), Positives = 215/467 (46%), Gaps = 14/467 (2%) Query: 40 PVLAKQKLVLFMXXXXXXXXXXXXXYRMCLKLDKYSPRIVIPATLLFSCAIQIVIIFLFT 99 P L QK ++ + Y + L +++ + I A L +Q++ I +F Sbjct: 38 PKLISQKPLVLIGLAISEFLILLGIYYIGQFLLRFNEKKTILAILAVYIIVQVIYILMFP 97 Query: 100 RLPTDDSQTVLSLARDMLYRNDYSSFDTSGYLHMFPFQFSIVLYLKTLLYLFPDNYLVIK 159 +D+ V AR+ L +SS YL +P I ++ L PD L ++ Sbjct: 98 VNAYEDAAIVEGFAREFL-NGKFSSLQIGNYLGYYPNNIGITVFFAFLYLFLPDTLLTLR 156 Query: 160 SFNILFSLVTTLMIYLLYKELNPTSKRQDYGVLVFAATYLPSLFMSNLIYNDVIATAFLT 219 N++FS +T + Y LY EL P + GVL+ +LP++ ++NL Y D+I+T+ + Sbjct: 157 FCNVIFSTLTAWLTYKLYIELFPNERNSSVGVLLLTVCFLPAIILNNLTYGDIISTSLCS 216 Query: 220 SALYFAVRFTRTTSYKDILLTAILLAAGNYFRSIGXXXXXXXXXXXXXHMR----TLGWK 275 + L +A +F +T+ K + TA+LL GN+ RS+ + + + K Sbjct: 217 AGLLYASKFVKTSLLKYAVYTALLLMLGNFIRSVALLFLLAVLLYWALNSKLFRCAIDMK 276 Query: 276 KVIPPVILTVLLFNVPGWTQNAVLQGTHTVEESPNQNSAPVYMWLNMGVNLE-TFGFWDN 334 +VI ++ VL F++P + V + ++E ++ PV+ W+N+G + G+WD Sbjct: 277 RVIAGTVIAVLAFSLPLKIFSFVGFKSGIIQEPVGIHANPVWRWINIGFPSDGKLGYWDG 336 Query: 335 RESYSIYQQDAGYNKAESTRLFKASIADKFSKATAGELVNMYYKKLIWTWTEGTYQIERY 394 + SI+ N +++ F I DK+ + Y KK WTWTEGTY + Y Sbjct: 337 GRNTSIFVSRYNCNPKLASKFFIHDIIDKYRNIGKKNTIKGYTKKTFWTWTEGTYNVNFY 396 Query: 395 XXXXXXXXXXXXXXXFVMDRYVYTTFASDWFKGDSNARSGLLWTLYVLNILMYACILVRL 454 + +Y D R + W L+ N + A + L Sbjct: 397 GLSQALEPENFKLYDTPLIKYAE--------PADKTFRESIDWYLHTYNWITLALMAFYL 448 Query: 455 IGGIKAKRYAETPLILVILGFIGFYLLWEIKSRYIYPVYPLLIVFSY 501 IK K ++ LI IL ++GFY WE+KSRY++ +YP+LI+ SY Sbjct: 449 GNCIKRKDFSTELLIYTILFYLGFYFFWEVKSRYLFGLYPILIILSY 495 >B2TJM5.1 B2TJM5_CLOBB Putative membrane protein Length = 481 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/311 (23%), Positives = 141/311 (45%), Gaps = 8/311 (2%) Query: 82 ATLLFSCAIQIVIIFLFTRLPTDDSQTVLSLARDMLYRNDYSSFDTSGYLHMFPFQFSIV 141 + +L S I+I+ I P D + + ++ + D S F GY+ FP V Sbjct: 72 SLILISIFIKILWILNADNTPNSDFKVMYECGKNFI-SGDLSCFKGIGYIGRFPHLTIHV 130 Query: 142 LYLKTLLYLFPD-NYLVIKSFNILFSLVTTLMIYLLYKELNPTSKRQDYGVLVFAATYLP 200 LY+ + YL P+ N L++K ++ + L++YL+ EL + ++ +L+ A+ + P Sbjct: 131 LYMAAIQYLSPESNLLIMKIISLFLGTIVVLIVYLITLELFKSKEKALLSLLI-ASVFPP 189 Query: 201 SLFMSNLIYNDVIATAFLTSALYFAVRFTRTTSYKDIL--LTAILLAAGNYFRSIGXXXX 258 + +++ ++ +A F ++Y +R + YK L L++I LA GN FR + Sbjct: 190 FITYTSVFCSENLAMPFYLLSIYLFLRGIESDKYKFQLFCLSSICLAFGNLFRMVAIIIL 249 Query: 259 XXXXXXXXXHMRTLGWKKVIPPVILTVLLFNVPGWTQNAVLQGTHTVEESPNQNSAPVYM 318 + + +KK+I V + V F + +++LQ + E + S P Sbjct: 250 IAYTLYILIYYKDRIFKKLINIVFVIVPYFLIIVLV-SSILQKVNITENPLWRGSEPKIT 308 Query: 319 WLNMGVNLETFGFWDNRESYSIYQQDAGYNKAESTRLFKASIADKFSKATAGELVNMYYK 378 + G N + G W+ ++ + + Y++ E K I D+F+ A +++ Y Sbjct: 309 NVLKGTNFNSLGMWNVEDAKLVEENINNYDELELK--CKEVIHDRFTTAPTIKVLIFYLG 366 Query: 379 KLIWTWTEGTY 389 KL W G + Sbjct: 367 KLGSQWCIGDF 377 >B2V531.1 B2V531_CLOBA Dolichyl-phosphate-mannose-protein mannosyltransferase EC=2.4.1.109 Length = 481 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 73/311 (23%), Positives = 138/311 (44%), Gaps = 8/311 (2%) Query: 82 ATLLFSCAIQIVIIFLFTRLPTDDSQTVLSLARDMLYRNDYSSFDTSGYLHMFPFQFSIV 141 + +L S I+I+ I P D + + ++ + D S F GY+ FP V Sbjct: 72 SLILISIFIKILWILNADNTPNSDFKVMYECGKNFI-SGDLSCFKGIGYIGRFPHLTIHV 130 Query: 142 LYLKTLLYLFP-DNYLVIKSFNILFSLVTTLMIYLLYKELNPTSKRQDYGVLVFAATYLP 200 LY+ + YL P N L++K ++ L++YL+ EL + ++ +L+ A+ + P Sbjct: 131 LYMAAIQYLSPASNLLIMKIISLFLGTTVVLIVYLITLELFKSKEKALLSLLI-ASVFPP 189 Query: 201 SLFMSNLIYNDVIATAFLTSALYFAVRFTRTTSYKDIL--LTAILLAAGNYFRSIGXXXX 258 + +++ ++ +A F ++Y +R + YK L L++I LA GN FR + Sbjct: 190 FITYTSVFCSENLAMPFYLLSIYLFLRGIESDKYKFRLFCLSSICLALGNLFRMVAIIVL 249 Query: 259 XXXXXXXXXHMRTLGWKKVIPPVILTVLLFNVPGWTQNAVLQGTHTVEESPNQNSAPVYM 318 + + +KK+I V + V F + +++LQ + E + S P Sbjct: 250 IAYTLYILIYYKDRIFKKLINIVFVVVPYFLIIVLV-SSILQKINITENPLWRGSEPKIT 308 Query: 319 WLNMGVNLETFGFWDNRESYSIYQQDAGYNKAESTRLFKASIADKFSKATAGELVNMYYK 378 + G N + G W+ ++ + + Y+ E K I D+F+ A +++ Y Sbjct: 309 NVLKGTNFNSLGMWNVEDAKLVEENINNYD--ELKLKCKEVIHDRFTTAPIIKVLIFYLG 366 Query: 379 KLIWTWTEGTY 389 KL W G + Sbjct: 367 KLGAQWCIGDF 377 >Q6HMU0.1 Q6HMU0_BACHK Putative uncharacterized protein Length = 477 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 170/389 (43%), Gaps = 61/389 (15%) Query: 120 NDYSSFDTSGYLHMFPFQFSIVLYLKTLLYLFPDNYLVIKSFNILFSLVTTLMIYLLYKE 179 N+ SF Y + +Q +Y ++ LF + L IK NIL+ T IY L Sbjct: 109 NNNFSFADKAYFTTWVYQLGFTMYQAGVIKLFGEGVLAIKLLNILYCTGITYFIYRLATH 168 Query: 180 L-NPTSKRQDYGVLVFAATYLPSLFMSNLIYNDVIATAFLTSALYFAVRFTRTTSYKDIL 238 L N S R L+F ATY+P++ M++++ N +AT + Y V+ + SY I Sbjct: 169 LFNEFSGR--VAALIF-ATYIPNIMMTSVLTNQHLATFLFYAGFYLLVKKGISHSYAWIF 225 Query: 239 LTAILLAAGNYFRSIGXX-XXXXXXXXXXXHM---RTLGWKKVIPPVILTVLLFNVPGWT 294 ++ IL+A G+ R IG H+ + L K V+ +I + ++ V + Sbjct: 226 VS-ILIAFGDIMRPIGIVILLALTLFLLITHIIGDQKLNKKMVVSKIIGMIGIYYVVHFI 284 Query: 295 QNAVLQGTHTVEESPNQNSAPVYMWLNMGVNLETFGFWDNRESYSIYQQDAGYNKAE-ST 353 + L T V + P + P + ++ +G N ET G + + ++Q G + E Sbjct: 285 FSYTLIAT-GVTQYPLSSRDPYWKFV-VGFNPETTGGFSFPDHKLVFQYPIGEERFEIEK 342 Query: 354 RLFKASIADKFSKATAGELVNMYYKKLIWTWTEGTYQIERYXXXXXXXXXXXXXXXFVMD 413 +L K ADK G+L+ ++ K W G Y Sbjct: 343 QLIKERTADK------GQLLLLFKDKFKVMW--GDYD----------------------- 371 Query: 414 RYVYTTFASDWFKGDSNAR---SGLLWTLYVL---NILMYACILVRLIGGIKAKRYAETP 467 A+ ++ + + R S LLWTL L +I ++ACI I IK +R +T Sbjct: 372 -------AAIYWGLEGHPRPELSKLLWTLEKLCYVSICIFACIAS--IKMIKEQR-NKTL 421 Query: 468 LI--LVILGFIGFYLLWEIKSRYIYPVYP 494 L L+ILG++G + EI+SRY Y + P Sbjct: 422 LFFSLLILGYVGVHFFIEIQSRYRYFIIP 450 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,722,734,094 Number of extensions: 103385961 Number of successful extensions: 315803 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 315810 Number of HSP's successfully gapped: 30 Length of query: 517 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 377 Effective length of database: 1,741,754,103 Effective search space: 656641296831 Effective search space used: 656641296831 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 134 (56.2 bits)