BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0027.p (343 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5Z3.1 B3K5Z3_9BACI Putative uncharacterized protein 198 5e-49 B3WBQ5.1 B3WBQ5_LACCB Uncharacterized protein IRC4 (Increased re... 178 5e-43 C5F7N1.1 C5F7N1_LACPA Putative uncharacterized protein 178 6e-43 C1PD66.1 C1PD66_BACCO Putative uncharacterized protein 177 9e-43 Q033P1.1 Q033P1_LACC3 Putative uncharacterized protein 176 2e-42 >B3K5Z3.1 B3K5Z3_9BACI Putative uncharacterized protein Length = 200 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 92/161 (57%), Positives = 114/161 (70%) Query: 6 YSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWDK 65 Y SK+ + I Y+L D EF+ V +K+ RI VD+TP E+IAYQLGWL LVM W++ Sbjct: 35 YPSKEAFIAEIRRTYMLFDQEFDAVPEDKKNHRIGEVDRTPQEMIAYQLGWLSLVMSWER 94 Query: 66 DEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTEE 125 DER G V P+P YKWNQLG LYQ FY+AY YSL ELR + +Q +W +W+ LTEE Sbjct: 95 DERAGIEVTTPAPDYKWNQLGALYQRFYQAYDGYSLVELRFMLKQRTDEWCEWINRLTEE 154 Query: 126 ELFIQGIRQWTGSKENWPMARWIHINSVAPFTSFRAKIRKW 166 ELF G+R+WT + NWPM +W+HINSVAPF SFR KIRKW Sbjct: 155 ELFRPGVRKWTVTSANWPMWKWLHINSVAPFKSFRTKIRKW 195 >B3WBQ5.1 B3WBQ5_LACCB Uncharacterized protein IRC4 (Increased recombination centers protein 4) Length = 169 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 112/161 (69%) Query: 6 YSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWDK 65 Y+ K+ LL+ I +Y AEF D+ ++++ + GVDKTP+E+++YQLGWL L++ WD+ Sbjct: 4 YADKQALLDTIEERYAKFRAEFTDIPEDKRELLVEGVDKTPSEMLSYQLGWLNLLLSWDR 63 Query: 66 DEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTEE 125 DE G V P+PGYKWN LGGLYQSFYE Y + SL + + ++ W+ TL++ Sbjct: 64 DEVAGIEVETPAPGYKWNNLGGLYQSFYEQYGQQSLQDQLAALDLLVKELCTWIETLSQS 123 Query: 126 ELFIQGIRQWTGSKENWPMARWIHINSVAPFTSFRAKIRKW 166 ELF G+R+W +K WP+ +WIHINSVAPFT+FR KIRKW Sbjct: 124 ELFDAGVRRWATTKAQWPLWKWIHINSVAPFTNFRPKIRKW 164 >C5F7N1.1 C5F7N1_LACPA Putative uncharacterized protein Length = 172 Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 112/161 (69%) Query: 6 YSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWDK 65 Y+ K+ LL+ I +Y AEF D+ ++++ + GVDKTP+E+++YQLGWL L++ WD+ Sbjct: 7 YADKQALLDTIEERYAKFRAEFTDIPEEKRELLVEGVDKTPSEMLSYQLGWLNLLLSWDR 66 Query: 66 DEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTEE 125 DE G V P+PGYKWN LGGLYQSFYE Y + SL + + ++ W+ TL++ Sbjct: 67 DEVAGIEVETPAPGYKWNNLGGLYQSFYEHYGQQSLQDQLAALDLLVKELCTWIETLSQS 126 Query: 126 ELFIQGIRQWTGSKENWPMARWIHINSVAPFTSFRAKIRKW 166 ELF G+R+W +K WP+ +WIHINSVAPFT+FR KIRKW Sbjct: 127 ELFDAGVRRWATTKTQWPLWKWIHINSVAPFTNFRPKIRKW 167 >C1PD66.1 C1PD66_BACCO Putative uncharacterized protein Length = 173 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 5 EYSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWD 64 +Y SKK L++ I L EF ++ KDV + GVD+TP+++IAYQLGWL L++ W+ Sbjct: 3 KYESKKSLIDEITKSAKLFIDEFRSINNLNKDVFVNGVDRTPSQMIAYQLGWLNLILSWE 62 Query: 65 KDEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTE 124 +D +EG+ VI P+P YKWN LGGLYQSFY+ YA S+ L +LF Q + + V + + Sbjct: 63 QDNKEGKNVITPAPDYKWNNLGGLYQSFYDKYANDSIETLIELFNQDVHKIIQLVESYND 122 Query: 125 EELFIQGIRQWTGSK-ENWPMARWIHINSVAPFTSFRAKIRKW 166 +ELF QG RQW S NWP+ +WIHIN+VAPF +FR KIRKW Sbjct: 123 QELFEQGGRQWASSTPSNWPIWKWIHINTVAPFKTFRTKIRKW 165 >Q033P1.1 Q033P1_LACC3 Putative uncharacterized protein Length = 169 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 111/161 (68%) Query: 6 YSSKKDLLEAIHSKYVLLDAEFEDVDTSQKDVRIPGVDKTPAEIIAYQLGWLQLVMGWDK 65 Y+ K+ LL+ I +Y AEF D+ ++++ + GVDKTP+E+++YQLGWL L++ WD+ Sbjct: 4 YADKQALLDTIEERYAKFRAEFTDIPEEKRELLVEGVDKTPSEMLSYQLGWLNLLLSWDR 63 Query: 66 DEREGRAVIMPSPGYKWNQLGGLYQSFYEAYAEYSLPELRDLFRQIEQQWLDWVGTLTEE 125 DE G V P+PGYKWN LGGLYQSFYE Y + SL + + ++ W+ TL++ Sbjct: 64 DEVAGIEVETPAPGYKWNNLGGLYQSFYEHYGQQSLQDQLAALDLLVKELCTWIETLSQS 123 Query: 126 ELFIQGIRQWTGSKENWPMARWIHINSVAPFTSFRAKIRKW 166 ELF +R+W +K WP+ +WIHINSVAPFT+FR KIRKW Sbjct: 124 ELFDANVRRWATTKAQWPLWKWIHINSVAPFTNFRPKIRKW 164 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,541,909,702 Number of extensions: 73389101 Number of successful extensions: 118528 Number of sequences better than 1.0e-05: 140 Number of HSP's gapped: 118403 Number of HSP's successfully gapped: 140 Length of query: 343 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 207 Effective length of database: 1,779,438,163 Effective search space: 368343699741 Effective search space used: 368343699741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)