BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0024.p (489 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAI5.1 B3KAI5_9BACI N-6 DNA methylase 871 0.0 Q0AZK8.1 Q0AZK8_SYNWW Type I restriction modification system M s... 845 0.0 A5KNN9.1 A5KNN9_9FIRM Putative uncharacterized protein 599 e-169 Q5L352.1 Q5L352_GEOKA Type I restriction modification system M s... 593 e-168 B0A8Q8.1 B0A8Q8_9CLOT Putative uncharacterized protein 582 e-164 >B3KAI5.1 B3KAI5_9BACI N-6 DNA methylase Length = 489 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/489 (83%), Positives = 453/489 (92%) Query: 1 MLTGEVRNKVDKIWSDIWAGGISNPLTVIEQLTYLMFIRSLDEKELENESFEALSGEKMP 60 MLTGE+RNK+DKIWSD+WAGGISNPLTVIEQLTYLMFIRSLDEK+LE+E EAL+GE MP Sbjct: 1 MLTGEIRNKIDKIWSDMWAGGISNPLTVIEQLTYLMFIRSLDEKDLESEMTEALTGETMP 60 Query: 61 KIFPENEEGQELRWSKFKTKDARIIYDIVSTKVFPFIKAMNGANTTAFSRYMQDAMFLVP 120 K+FP +EEGQ +RWSKFK KD R I++IV TKVFP+IK +NG N TAFSRYMQDAMFL+P Sbjct: 61 KVFPLDEEGQSMRWSKFKNKDPREIFNIVGTKVFPYIKNLNGTNETAFSRYMQDAMFLIP 120 Query: 121 TPQVLQKMITGLDELYEHDIKNLDMQGDLYEYMLGKLASAGQNGQFRTPKHIRDLMVRLI 180 TPQVLQK+ITGLDELYEHDIK+LDMQGDLYEYMLGKLA++GQNGQFRTPKHIRD+MVRL+ Sbjct: 121 TPQVLQKIITGLDELYEHDIKDLDMQGDLYEYMLGKLATSGQNGQFRTPKHIRDMMVRLL 180 Query: 181 APTPNDKIVDPACGTAGFLVSSAEYIREKYEAEMTSEQWEHFSGEMFSGYDTDRTMLRLS 240 APTP+DKI DPACGTAGFL+SSAEYIREKYEAEMTSEQWEHF+GEMFSG+DTDRTMLRLS Sbjct: 181 APTPDDKICDPACGTAGFLISSAEYIREKYEAEMTSEQWEHFAGEMFSGFDTDRTMLRLS 240 Query: 241 AMNLMLHSISQPHIDYVDSVSRQNNTASAYDIVLANPPFTGTVDAESINENLRTITDTKK 300 AMNLMLHSI+QP+IDYVDSVS+QN TAS YDIVLANPPFTGTVDAESI++NL+TI +TKK Sbjct: 241 AMNLMLHSINQPNIDYVDSVSKQNETASEYDIVLANPPFTGTVDAESIHDNLKTICNTKK 300 Query: 301 TELLFVALFLRILRKGGRCACIVPDGVLFGSTKAHKSLRKELVENHQLQAVISMPSGVFK 360 TELLFVALFLRIL+KGGRCACIVPDGVLFG+TKAHKSLRKELVENHQLQAVISMPSGVFK Sbjct: 301 TELLFVALFLRILQKGGRCACIVPDGVLFGTTKAHKSLRKELVENHQLQAVISMPSGVFK 360 Query: 361 PYAGVSTAILLFTKTDAGGTDKVWFYDMKADGYSLDDKRSXXXXXXXXXXXXRYHNLEGE 420 PYAGVSTAIL+FTKTDAGGTDKVWFYDM+ADGYSLDDKRS R+HN++ E Sbjct: 361 PYAGVSTAILIFTKTDAGGTDKVWFYDMQADGYSLDDKRSPIEANDIPDILNRFHNIDAE 420 Query: 421 ADRQPTEPSFLVDKSAIEANDYDLSINRYKEVVYEKVEYDKPEVIMTRLDELSLDISSKM 480 ADR+PTE SFLV+KS I A DYDLSINRYKEVVYEKVEYD P+VIM RLDEL+L I+SKM Sbjct: 421 ADRKPTEQSFLVEKSVIVAKDYDLSINRYKEVVYEKVEYDAPDVIMNRLDELNLSIASKM 480 Query: 481 EELRGLLGE 489 EELRGL+GE Sbjct: 481 EELRGLIGE 489 >Q0AZK8.1 Q0AZK8_SYNWW Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) Length = 489 Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/489 (79%), Positives = 446/489 (91%) Query: 1 MLTGEVRNKVDKIWSDIWAGGISNPLTVIEQLTYLMFIRSLDEKELENESFEALSGEKMP 60 M+TGE+RNK+DKIW+D+WAGGI+NPLTVIEQLTYLMFIRSLDEKELE ES EALSGE+MP Sbjct: 1 MITGEIRNKIDKIWTDMWAGGITNPLTVIEQLTYLMFIRSLDEKELEMESVEALSGEEMP 60 Query: 61 KIFPENEEGQELRWSKFKTKDARIIYDIVSTKVFPFIKAMNGANTTAFSRYMQDAMFLVP 120 KIFP+++ GQ++RWSKFKTKD+R IYDIV +KVFPFIKAMNG NT+AFSRYMQDAMFL+P Sbjct: 61 KIFPQDKAGQDMRWSKFKTKDSRAIYDIVGSKVFPFIKAMNGKNTSAFSRYMQDAMFLIP 120 Query: 121 TPQVLQKMITGLDELYEHDIKNLDMQGDLYEYMLGKLASAGQNGQFRTPKHIRDLMVRLI 180 TPQVLQK+ITGLDELYEHDIK+LDMQGD+YEYMLGKL++AGQNGQFRTPK IRD+MVRL+ Sbjct: 121 TPQVLQKIITGLDELYEHDIKDLDMQGDVYEYMLGKLSTAGQNGQFRTPKQIRDMMVRLL 180 Query: 181 APTPNDKIVDPACGTAGFLVSSAEYIREKYEAEMTSEQWEHFSGEMFSGYDTDRTMLRLS 240 P P++K+ DPACGTAGFLVS AEYIREKYE EMT EQWEHF G MF+G+DTDRTMLR+S Sbjct: 181 DPAPDNKVCDPACGTAGFLVSIAEYIREKYETEMTPEQWEHFGGAMFTGFDTDRTMLRIS 240 Query: 241 AMNLMLHSISQPHIDYVDSVSRQNNTASAYDIVLANPPFTGTVDAESINENLRTITDTKK 300 AMNLMLHSI+QP I+YVDSVS+QN+ +SAYDI+LANPPFTGT+D ESIN+NL+ + +KK Sbjct: 241 AMNLMLHSITQPRIEYVDSVSKQNSISSAYDIILANPPFTGTIDTESINDNLKAVCSSKK 300 Query: 301 TELLFVALFLRILRKGGRCACIVPDGVLFGSTKAHKSLRKELVENHQLQAVISMPSGVFK 360 TELLFVALFLR+LRKGGRC+CIVPDGVLFG+T+AHK+LRKELVENHQLQ VISMPSGVFK Sbjct: 301 TELLFVALFLRMLRKGGRCSCIVPDGVLFGTTRAHKALRKELVENHQLQTVISMPSGVFK 360 Query: 361 PYAGVSTAILLFTKTDAGGTDKVWFYDMKADGYSLDDKRSXXXXXXXXXXXXRYHNLEGE 420 PYAGVSTAIL+FTKT AGGTDKVWFYDM+ADGYSLDDKR+ R+HN EGE Sbjct: 361 PYAGVSTAILVFTKTGAGGTDKVWFYDMRADGYSLDDKRTPIEDNDIPDIIARFHNPEGE 420 Query: 421 ADRQPTEPSFLVDKSAIEANDYDLSINRYKEVVYEKVEYDKPEVIMTRLDELSLDISSKM 480 ADR+PTE SF V+KSAI ANDYDLSINRYKE+VYEKV YD P VIM RLD+L+LDI++KM Sbjct: 421 ADRKPTEQSFFVEKSAIVANDYDLSINRYKEIVYEKVVYDAPAVIMDRLDKLNLDIAAKM 480 Query: 481 EELRGLLGE 489 EELRGL+GE Sbjct: 481 EELRGLIGE 489 >A5KNN9.1 A5KNN9_9FIRM Putative uncharacterized protein Length = 489 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 293/487 (60%), Positives = 365/487 (74%) Query: 1 MLTGEVRNKVDKIWSDIWAGGISNPLTVIEQLTYLMFIRSLDEKELENESFEALSGEKMP 60 ML V+NK+++IW D+ AGG+S P VIEQLTYLMF + +DE+E + E E LSGEK Sbjct: 1 MLPSVVKNKIEQIWLDVIAGGVSQPTEVIEQLTYLMFAKQIDEREADIEMAELLSGEKQS 60 Query: 61 KIFPENEEGQELRWSKFKTKDARIIYDIVSTKVFPFIKAMNGANTTAFSRYMQDAMFLVP 120 IF E+ E Q LRW FK +AR ++ +VF F+ +N +AFSRY++ A F + Sbjct: 61 HIFGESREEQALRWRNFKGMEARALHKHFVDRVFIFLINLNSNENSAFSRYLKHATFKIN 120 Query: 121 TPQVLQKMITGLDELYEHDIKNLDMQGDLYEYMLGKLASAGQNGQFRTPKHIRDLMVRLI 180 P LQK++ GL++L+E+DIK+LDMQGDLYEYMLGKL SAG+ G FRTPKHIRD+MV+L+ Sbjct: 121 EPLALQKVVAGLEDLFENDIKDLDMQGDLYEYMLGKLNSAGRLGAFRTPKHIRDMMVKLM 180 Query: 181 APTPNDKIVDPACGTAGFLVSSAEYIREKYEAEMTSEQWEHFSGEMFSGYDTDRTMLRLS 240 PTP+ KI DPACGTAGFL+SSAEYIR +Y +MT+EQWE + E F+G+DTD TM RLS Sbjct: 181 MPTPDMKICDPACGTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDETMCRLS 240 Query: 241 AMNLMLHSISQPHIDYVDSVSRQNNTASAYDIVLANPPFTGTVDAESINENLRTITDTKK 300 MNLMLHS+ P ++ DSVS+ AYD++LANPPF GT++ E+INE+L IT+T K Sbjct: 241 CMNLMLHSVINPQLNKQDSVSKDYQVKDAYDLILANPPFKGTINKENINESLLAITNTTK 300 Query: 301 TELLFVALFLRILRKGGRCACIVPDGVLFGSTKAHKSLRKELVENHQLQAVISMPSGVFK 360 TELLFVALF+R+LR GGRCACIVPDGVLFGS+KAHK+LRKEL+EN L+AVISMPSGVFK Sbjct: 301 TELLFVALFIRLLRVGGRCACIVPDGVLFGSSKAHKNLRKELIENQYLEAVISMPSGVFK 360 Query: 361 PYAGVSTAILLFTKTDAGGTDKVWFYDMKADGYSLDDKRSXXXXXXXXXXXXRYHNLEGE 420 PYAGVSTAIL+FTKT+ GTDKVWFYDMKADGYSLDDKR R+H E E Sbjct: 361 PYAGVSTAILIFTKTNGTGTDKVWFYDMKADGYSLDDKRQPVQENDIPDIIERFHKKENE 420 Query: 421 ADRQPTEPSFLVDKSAIEANDYDLSINRYKEVVYEKVEYDKPEVIMTRLDELSLDISSKM 480 DR+ TE SF+VDK I N YDLSIN+YK++ Y VEY E I+ ++EL+ +I+ + Sbjct: 421 EDRERTEQSFMVDKQEIIDNGYDLSINKYKKIEYVPVEYPPTEEILAEIEELNEEITKET 480 Query: 481 EELRGLL 487 ELR LL Sbjct: 481 AELRALL 487 >Q5L352.1 Q5L352_GEOKA Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) EC=2.1.1.72 Length = 484 Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust. Identities = 284/489 (58%), Positives = 369/489 (75%), Gaps = 8/489 (1%) Query: 1 MLTGEVRNKVDKIWSDIWAGGISNPLTVIEQLTYLMFIRSLDEKELENESFEALSGEKMP 60 MLTGE+RNKVDKIW W GGI+NPLTVIEQ TYL+FI+ LDE E + E +AL G + Sbjct: 1 MLTGELRNKVDKIWETFWTGGITNPLTVIEQFTYLLFIKGLDEVETQREQEDALLGIESE 60 Query: 61 KIFPENEEGQELRWSKFKTKDARIIYDIVSTKVFPFIKAMNGANTTAFSRYMQDAMFLVP 120 +IFP ++ Q LRWSKFK +A +YD+VS +VFPFIK ++G +A+++YM DA+F++P Sbjct: 61 RIFPPDK--QHLRWSKFKHFEAAHMYDVVSNEVFPFIKNLHGNRESAYAKYMGDAIFMIP 118 Query: 121 TPQVLQKMITGLDELYEHDIKNLDMQGDLYEYMLGKLASAGQNGQFRTPKHIRDLMVRLI 180 TPQ+L K++ G+D + +K+ D +GDLYEY+L K+A+AG NGQFRTP+HI +MV L+ Sbjct: 119 TPQMLVKIVDGIDRI---PMKDRDTKGDLYEYLLSKIATAGTNGQFRTPRHIIHMMVELM 175 Query: 181 APTPNDKIVDPACGTAGFLVSSAEYIREKYEAEMTSEQW--EHFSGEMFSGYDTDRTMLR 238 PTP D IVDPA G+AGFLV++ EY+R K+ +++ Q EHF+ MF G+D DRTMLR Sbjct: 176 KPTPEDIIVDPAAGSAGFLVAAGEYLR-KHRSDLFLVQSLKEHFNNHMFYGFDMDRTMLR 234 Query: 239 LSAMNLMLHSISQPHIDYVDSVSRQNNTASAYDIVLANPPFTGTVDAESINENLRTITDT 298 + AMN+MLH I P+I+Y DS+S QN Y +VLANPPF G++D ++++ +L + T Sbjct: 235 IGAMNMMLHGIENPNIEYRDSLSEQNKDKDKYTLVLANPPFKGSLDYDAVSNDLLKVVKT 294 Query: 299 KKTELLFVALFLRILRKGGRCACIVPDGVLFGSTKAHKSLRKELVENHQLQAVISMPSGV 358 KKTELLF+ALFLRIL+ GGRCACIVPDGVLFGS+KAHK +RKE+VENH+L+A+ISMPSGV Sbjct: 295 KKTELLFLALFLRILKTGGRCACIVPDGVLFGSSKAHKDIRKEIVENHKLEAIISMPSGV 354 Query: 359 FKPYAGVSTAILLFTKTDAGGTDKVWFYDMKADGYSLDDKRSXXXXXXXXXXXXRYHNLE 418 FKPYAGVSTAI++FTKT GGTD+VWFYDMKADGYSLDDKR+ R+HN E Sbjct: 355 FKPYAGVSTAIMIFTKTGLGGTDQVWFYDMKADGYSLDDKRTPIEENDIPDIIARFHNRE 414 Query: 419 GEADRQPTEPSFLVDKSAIEANDYDLSINRYKEVVYEKVEYDKPEVIMTRLDELSLDISS 478 E +R+ TE SF V I NDYDLSIN+YKE+ YE+V+Y+ P VI+ R+ EL DI Sbjct: 415 AEKERKRTEQSFFVPVEEIRENDYDLSINKYKEIEYEEVQYEAPSVIIKRIKELENDILK 474 Query: 479 KMEELRGLL 487 + EL L+ Sbjct: 475 GLGELEDLI 483 >B0A8Q8.1 B0A8Q8_9CLOT Putative uncharacterized protein Length = 486 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 282/488 (57%), Positives = 366/488 (75%), Gaps = 5/488 (1%) Query: 1 MLTGEVRNKVDKIWSDIWAGGISNPLTVIEQLTYLMFIRSLDEKELENESFEALSGEKMP 60 M+TGE+RNKVDKIW W GGI+NPL VIEQ TYL+FI+ LD+ E + ES G Sbjct: 1 MITGELRNKVDKIWEIFWTGGITNPLEVIEQFTYLLFIKGLDDNETQKESDAIFLGIPFE 60 Query: 61 KIFPENEEGQELRWSKFKTKDARIIYDIVSTKVFPFIKAMNGANTTAFSRYMQDAMFLVP 120 IFP+++ Q LRW+KFK ++ ++YDI++ +VFPFIK ++G +A+S+YM DA+F +P Sbjct: 61 GIFPQDK--QHLRWNKFKNEEPTVMYDIMANEVFPFIKNLHGDGESAYSKYMGDAIFKIP 118 Query: 121 TPQVLQKMITGLDELYEHDIKNLDMQGDLYEYMLGKLASAGQNGQFRTPKHIRDLMVRLI 180 T +L K+I G+D+L E D K+ D +GDLYEY+L K+A+AG NGQFRTP+HI D++V L+ Sbjct: 119 TALMLAKIIDGIDKL-EIDNKD-DNKGDLYEYLLSKVATAGTNGQFRTPRHIIDMIVSLM 176 Query: 181 APTPNDKIVDPACGTAGFLVSSAEYIREKY-EAEMTSEQWEHFSGEMFSGYDTDRTMLRL 239 PTP D IVDPA G+AGFLVSS +Y+R+ + + + EHF+ +MF G+D DRTMLR+ Sbjct: 177 KPTPQDTIVDPAAGSAGFLVSSQQYLRDNHADLFLVQSLKEHFNNDMFYGFDMDRTMLRI 236 Query: 240 SAMNLMLHSISQPHIDYVDSVSRQNNTASAYDIVLANPPFTGTVDAESINENLRTITDTK 299 AMN+MLH + P+I+Y DS+S N + Y +VLANPPF G++D E++ +L +T TK Sbjct: 237 GAMNMMLHGVDNPNIEYKDSLSEVNTDSEKYSLVLANPPFKGSLDYEAVGADLLKVTKTK 296 Query: 300 KTELLFVALFLRILRKGGRCACIVPDGVLFGSTKAHKSLRKELVENHQLQAVISMPSGVF 359 KTELLF+ALFLRIL+KGGRCA IVPDGVLFGSTK HK +RKE+VEN++L+A+ISMPSGVF Sbjct: 297 KTELLFLALFLRILKKGGRCASIVPDGVLFGSTKGHKDIRKEIVENNKLEAIISMPSGVF 356 Query: 360 KPYAGVSTAILLFTKTDAGGTDKVWFYDMKADGYSLDDKRSXXXXXXXXXXXXRYHNLEG 419 KPYAGVSTAI++FTKT GGTDKVWFYDMKADGYSLDDKR+ R+ NL+ Sbjct: 357 KPYAGVSTAIIIFTKTGNGGTDKVWFYDMKADGYSLDDKRNPVEENDIPDIIERFDNLDK 416 Query: 420 EADRQPTEPSFLVDKSAIEANDYDLSINRYKEVVYEKVEYDKPEVIMTRLDELSLDISSK 479 E DR+ TE SF VDKS I N YDLSIN+YKE+ YE+V YD PEVI+ R+ EL +I Sbjct: 417 EVDRKRTEQSFFVDKSEIVENGYDLSINKYKEIEYEEVVYDAPEVILGRVKELEDEIVKG 476 Query: 480 MEELRGLL 487 + EL +L Sbjct: 477 ISELERIL 484 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,862,345,933 Number of extensions: 116113372 Number of successful extensions: 299979 Number of sequences better than 1.0e-05: 1505 Number of HSP's gapped: 295849 Number of HSP's successfully gapped: 1565 Length of query: 489 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 349 Effective length of database: 1,741,754,103 Effective search space: 607872181947 Effective search space used: 607872181947 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)