BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0022.p (1115 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAI7.1 B3KAI7_9BACI Type III restriction protein res subunit 1822 0.0 Q0AZK4.1 Q0AZK4_SYNWW Type I restriction-modification system R s... 1820 0.0 C1Q679.1 C1Q679_9ACTN Helicase, type I site-specific restriction... 1144 0.0 Q5L349.1 Q5L349_GEOKA Type I restriction-modification system R s... 1090 0.0 B4BSJ3.1 B4BSJ3_9BACI Type III restriction protein res subunit 1051 0.0 >B3KAI7.1 B3KAI7_9BACI Type III restriction protein res subunit Length = 1117 Score = 1822 bits (4720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 864/1116 (77%), Positives = 981/1116 (87%), Gaps = 1/1116 (0%) Query: 1 MPANFEFLLGQPEYKLFANACIEAERVLATSPAMAAVGSRKAFELAVKWVYAADNTITMP 60 MPANFEFL QPEYKLFA+ACIEAERVL+TSPAMAAVGSRKAFELAVKWVY+ADNTI MP Sbjct: 1 MPANFEFLQDQPEYKLFASACIEAERVLSTSPAMAAVGSRKAFELAVKWVYSADNTIVMP 60 Query: 61 YKDNLQALIHEPTFKFAMENQTWGKLPYIIKLGNLAVHTDKXXXXXXXXXXXXXXFEFIQ 120 YKDNLQ+LIHEP+F+FAME QTWGKLPYIIKLGNLAVHTD+ FEFIQ Sbjct: 61 YKDNLQSLIHEPSFRFAMEPQTWGKLPYIIKLGNLAVHTDRAIQRSDAILSLASLFEFIQ 120 Query: 121 WLDYCYGVNYEERHFAEDNIPVEKVVLDEARIKEKDSLIEQKESEIEALRAQIAAMSDRL 180 WLDYCYG NYEER F E+ IP +KV+LDEARIKEKDSLIEQK+SEIEALRAQIAAMSDRL Sbjct: 121 WLDYCYGTNYEERTFHEERIPDKKVILDEARIKEKDSLIEQKDSEIEALRAQIAAMSDRL 180 Query: 181 TADKEQHQEERHFTPEDISEFRTRKKYIDVDLKLLGWTLGDDAREEVELYGMPNDEGKGY 240 TA+K H+EER FTPEDISEF+TRKKYIDVDLKLLGW G+D +EEVEL GMPN E KGY Sbjct: 181 TAEKSVHKEERQFTPEDISEFKTRKKYIDVDLKLLGWVFGEDVKEEVELQGMPNPEQKGY 240 Query: 241 ADYVLYGKDGLPLAIIEAKRTSKDPKAGTHQAKLYADCLERMTGRRPMMFTSNGFETNLW 300 ADYVLYGKDGLPLAIIEAKRTS+DPK G QAKLYADCLER TGRRPMMFT+NGFET+LW Sbjct: 241 ADYVLYGKDGLPLAIIEAKRTSRDPKIGAQQAKLYADCLERSTGRRPMMFTTNGFETHLW 300 Query: 301 DDVTSPQRKVSGVFSKSDLQKLMNRRNERKVLDEVVIDDNITDRYYQKEAIRAVCDNIMT 360 DD+++PQRKVSG+FSK+DL+KLMNRR ERK LD+V+IDD ITDRYYQKEAIRA+CD+I T Sbjct: 301 DDLSAPQRKVSGIFSKADLEKLMNRRTERKPLDQVLIDDRITDRYYQKEAIRAICDSIQT 360 Query: 361 GHRRSLLVMATGTGKTRTASSLTDVLSRGGYVTNILFLADRKALVKQAKDDFKNYLPDMS 420 GHR++LLVMATGTGKTRTASSLTDVLSRGGYVTN+LFLADR ALV QAK+DFKNYLPD+S Sbjct: 361 GHRKALLVMATGTGKTRTASSLTDVLSRGGYVTNVLFLADRTALVTQAKNDFKNYLPDLS 420 Query: 421 LCNLLSNKDDKTARIVFSTYPTMLNAIDRAKSDDGKRLFTPAHFDLIIVDEAHRSIFKKF 480 LCNLLSNKD+K+ARIVFSTYPTMLNAID K++DGKRLFTPAHFDLIIVDEAHRSIFKK+ Sbjct: 421 LCNLLSNKDNKSARIVFSTYPTMLNAIDDVKNEDGKRLFTPAHFDLIIVDEAHRSIFKKY 480 Query: 481 RAIFEYFDGYVVGLTATPKTDVDRNTYDFFEMESGVPTYAYPYETAVEMDRVLVPYHNIE 540 R IFEYFD VVGLTATPK DVDRNTYDFFE+ESGVPTYAYPYETAVE+D VLVPY NIE Sbjct: 481 RVIFEYFDAMVVGLTATPKMDVDRNTYDFFELESGVPTYAYPYETAVEVDHVLVPYQNIE 540 Query: 541 VTTKVLEQGITYDTLSADDKARYEEDFTEEDGEMPEFIPSPAINDFIFNQATVDQVLEDL 600 VTTK LE+GI YD LS DK RYEEDFT+EDGEMPE +PSPA+N+FIFNQ TVD VLEDL Sbjct: 541 VTTKFLEEGIAYDELSDQDKQRYEEDFTDEDGEMPEHVPSPAVNEFIFNQFTVDMVLEDL 600 Query: 601 MTQGIKVSGGDRLGKTIIFAQNKNHAQYIVERFNKLYPQYKGDFAKRIVSEDDYTQSLID 660 MT+G+KV+GGDRLGKTIIFAQNK HAQYIV+RFN LYPQY+G FAKRIVSED Y QS+ID Sbjct: 601 MTKGLKVAGGDRLGKTIIFAQNKRHAQYIVDRFNALYPQYRGSFAKRIVSEDAYAQSIID 660 Query: 661 DFKLANKSPYIAVSVDMLDTGIDVPEIVNLVFFKRIRSKTKFWQMIGRGTRLCKDLFGEG 720 +FK K PYIAVSVDMLDTGIDVPEI+NLVFFKRIRSKTKFWQMIGRGTRL K+LFGEG Sbjct: 661 EFKAPEKEPYIAVSVDMLDTGIDVPEILNLVFFKRIRSKTKFWQMIGRGTRLRKNLFGEG 720 Query: 721 EDKTHFVIFDYLGNFEFFRQHKEGLQGNEAYSLSEVIFAKRIRLIQHLQQAVFIDEPYQS 780 DKT FVIFDYLGNFEFFRQH+EGL GNEA SLSE IF KRI LI H+Q A F +E Q+ Sbjct: 721 LDKTGFVIFDYLGNFEFFRQHQEGLAGNEAKSLSESIFTKRISLIHHMQDASFAEEEIQA 780 Query: 781 IRTDLIEIVIGQIQALNTELVSVKMQLQYIEKYKHQAAFVCLLEQDQSNLIKYVAPIVYM 840 IRT++++ V QIQ LNTELVSVK++LQY+EKYK AFV L + ++ L +++AP+VYM Sbjct: 781 IRTEMVDTVAEQIQMLNTELVSVKLKLQYVEKYKQAEAFVYLSDANKQELNQHLAPLVYM 840 Query: 841 DDADEHAKRFDNLLYGLMLAQAEEAPQYKKSKKQLIDVATTLLQRATIPQVRDKLTLIQT 900 ++ DEH KRFDNL+YGLM+A E+ Q KK K QL D++ L +RATIPQ++DKL IQ Sbjct: 841 NETDEHEKRFDNLMYGLMIAHIEQTAQLKKLKNQLTDISFRLSKRATIPQIKDKLAFIQR 900 Query: 901 IGTEEFWDSANLLDFEKVRQELRGLIKFIVDEG-GKNPIYTNLADEVLEVHEGKAMYEAY 959 I EEFW++A+L+ +E++R ELR L+KF+VDE G+ IYTNL DEV+E+ EGK MY+AY Sbjct: 901 IAAEEFWETADLITYEQLRVELRSLMKFLVDESTGQGIIYTNLKDEVVEISEGKEMYQAY 960 Query: 960 TFEDYKLKVNRYIEKNRDNLVIHKLRNNIPLTALDYEALEKIFTGELGTAEDYEREFKDT 1019 F++YKLKVNRYIE+NRD++ IHKLRNNIPLT+LDYE+LEKIFTGELGTAEDY+REF+DT Sbjct: 961 NFDNYKLKVNRYIEQNRDSIAIHKLRNNIPLTSLDYESLEKIFTGELGTAEDYKREFQDT 1020 Query: 1020 PFGLLVRKIAKLEYAAATAAFSEFINDQSLSQGQIVFVKKVIDYIVQNGYIDNVTELTKP 1079 PFGLLVRK+AKL++ AA AFS+FINDQSL+Q QIVFVKKVIDYI QNGYID+V+EL KP Sbjct: 1021 PFGLLVRKVAKLDHEAAMNAFSDFINDQSLNQMQIVFVKKVIDYIAQNGYIDHVSELLKP 1080 Query: 1080 PFDKPQSFVKLFDGTKQRRLVETVAQIKENAVKIIG 1115 PFDKPQSF+KLFDG KQ++LV+TV IKENAV+I G Sbjct: 1081 PFDKPQSFIKLFDGAKQKKLVDTVNSIKENAVRITG 1116 >Q0AZK4.1 Q0AZK4_SYNWW Type I restriction-modification system R subunit (Endonuclease) Length = 1115 Score = 1820 bits (4714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 857/1115 (76%), Positives = 987/1115 (88%) Query: 1 MPANFEFLLGQPEYKLFANACIEAERVLATSPAMAAVGSRKAFELAVKWVYAADNTITMP 60 M ANF+FL GQ EY LFA ACIEAERVLATSPAMAA+GSRKA ELAVKWVY+ADNTITMP Sbjct: 1 MSANFDFLKGQAEYTLFATACIEAERVLATSPAMAAMGSRKACELAVKWVYSADNTITMP 60 Query: 61 YKDNLQALIHEPTFKFAMENQTWGKLPYIIKLGNLAVHTDKXXXXXXXXXXXXXXFEFIQ 120 Y+DNLQ+LIHEP+F+F ++NQTW KL YIIKLGNLAVHT+K FEFIQ Sbjct: 61 YRDNLQSLIHEPSFRFVLDNQTWSKLLYIIKLGNLAVHTEKAISRSDAVLSLSFLFEFIQ 120 Query: 121 WLDYCYGVNYEERHFAEDNIPVEKVVLDEARIKEKDSLIEQKESEIEALRAQIAAMSDRL 180 W+DYCYG NY ER F E IP E+V+LD ++KE DSLI+QK++EIEALRA+I AMS +L Sbjct: 121 WIDYCYGFNYVERSFDEAKIPAEQVILDVTKLKEIDSLIDQKDTEIEALRAKIEAMSPQL 180 Query: 181 TADKEQHQEERHFTPEDISEFRTRKKYIDVDLKLLGWTLGDDAREEVELYGMPNDEGKGY 240 TADKE H+EERHFTP DISE TRKKYIDVDLKLLGW GDD +EEVELYGMPN EGKGY Sbjct: 181 TADKEHHKEERHFTPLDISELLTRKKYIDVDLKLLGWVFGDDVQEEVELYGMPNPEGKGY 240 Query: 241 ADYVLYGKDGLPLAIIEAKRTSKDPKAGTHQAKLYADCLERMTGRRPMMFTSNGFETNLW 300 ADYVLYGKDGLPLA+IEAKRTSKDPK GT QAKLYADCLE+MTGRRPMMFT+NGFET LW Sbjct: 241 ADYVLYGKDGLPLAVIEAKRTSKDPKIGTQQAKLYADCLEKMTGRRPMMFTTNGFETYLW 300 Query: 301 DDVTSPQRKVSGVFSKSDLQKLMNRRNERKVLDEVVIDDNITDRYYQKEAIRAVCDNIMT 360 DD+TSPQRKVSGVFSK+DL+KLMNRRNERK LDE+ IDD ITDRYYQKEAIRAVC+NI T Sbjct: 301 DDLTSPQRKVSGVFSKADLEKLMNRRNERKPLDEIPIDDKITDRYYQKEAIRAVCENIET 360 Query: 361 GHRRSLLVMATGTGKTRTASSLTDVLSRGGYVTNILFLADRKALVKQAKDDFKNYLPDMS 420 GHR+SLLVMATGTGKTRTASSLTDVLSRGGY+TN LFLADR ALV+QAK+DFK LPDMS Sbjct: 361 GHRKSLLVMATGTGKTRTASSLTDVLSRGGYITNTLFLADRTALVRQAKNDFKTNLPDMS 420 Query: 421 LCNLLSNKDDKTARIVFSTYPTMLNAIDRAKSDDGKRLFTPAHFDLIIVDEAHRSIFKKF 480 LCNLL NK+DKTARIVFSTYPTMLNAID AK+++G+RLFTPAHFDLIIVDEAHRSIFKK+ Sbjct: 421 LCNLLINKEDKTARIVFSTYPTMLNAIDSAKNENGQRLFTPAHFDLIIVDEAHRSIFKKY 480 Query: 481 RAIFEYFDGYVVGLTATPKTDVDRNTYDFFEMESGVPTYAYPYETAVEMDRVLVPYHNIE 540 RAIFEYFD ++GLTATPK +VDRNTYDFFEMESGVPTYAY YETAV+ D VLVPYHNIE Sbjct: 481 RAIFEYFDSMLIGLTATPKQEVDRNTYDFFEMESGVPTYAYAYETAVDKDHVLVPYHNIE 540 Query: 541 VTTKVLEQGITYDTLSADDKARYEEDFTEEDGEMPEFIPSPAINDFIFNQATVDQVLEDL 600 V T+ LE+GITYD LS +DKARYEEDFT+EDGEMP+FIPSPA+N+FIFNQ TVD VLEDL Sbjct: 541 VRTRFLEEGITYDELSEEDKARYEEDFTDEDGEMPDFIPSPAVNEFIFNQCTVDMVLEDL 600 Query: 601 MTQGIKVSGGDRLGKTIIFAQNKNHAQYIVERFNKLYPQYKGDFAKRIVSEDDYTQSLID 660 MT+GIKV+GGDRLGKTIIFAQNK HA+YIVERFNKLYPQY G FAKR+V +D+Y Q++ID Sbjct: 601 MTKGIKVAGGDRLGKTIIFAQNKKHAEYIVERFNKLYPQYHGSFAKRVVCDDNYVQTIID 660 Query: 661 DFKLANKSPYIAVSVDMLDTGIDVPEIVNLVFFKRIRSKTKFWQMIGRGTRLCKDLFGEG 720 DFK+A K P+IAVSVDMLDTGIDVPE+VNLVFFKRIRSK KFWQMIGRGTRLCK+LFG+G Sbjct: 661 DFKIAEKEPHIAVSVDMLDTGIDVPELVNLVFFKRIRSKIKFWQMIGRGTRLCKNLFGDG 720 Query: 721 EDKTHFVIFDYLGNFEFFRQHKEGLQGNEAYSLSEVIFAKRIRLIQHLQQAVFIDEPYQS 780 +DKTHF+IFDYLGNFEFFR +K+G++GNE S+SE IFAKR+RLI HLQQ+ F++EPYQ+ Sbjct: 721 QDKTHFLIFDYLGNFEFFRTNKDGVKGNETQSISEAIFAKRVRLIHHLQQSAFMEEPYQA 780 Query: 781 IRTDLIEIVIGQIQALNTELVSVKMQLQYIEKYKHQAAFVCLLEQDQSNLIKYVAPIVYM 840 IRT+LI+ V+ QI LNTEL+SVK+QLQYIEKYK++ AFV L + D+ +LI ++AP+VYM Sbjct: 781 IRTNLIDTVVQQINTLNTELISVKLQLQYIEKYKNKDAFVFLSDLDKHDLIVHLAPLVYM 840 Query: 841 DDADEHAKRFDNLLYGLMLAQAEEAPQYKKSKKQLIDVATTLLQRATIPQVRDKLTLIQT 900 DD DE AKRFDN +YGLM+AQ E AP + K KKQLI+V ++L QR TIPQ+++K+ LI Sbjct: 841 DDMDEFAKRFDNFMYGLMIAQIEGAPHFNKGKKQLINVCSSLSQRITIPQIKEKIELINN 900 Query: 901 IGTEEFWDSANLLDFEKVRQELRGLIKFIVDEGGKNPIYTNLADEVLEVHEGKAMYEAYT 960 +GT++FW ++++LDFEK R ELR LIKFIVDEGG +PIYTNL D VLEV EG+ + AYT Sbjct: 901 VGTDDFWQNSDILDFEKARIELRSLIKFIVDEGGVSPIYTNLNDIVLEVKEGEGLDPAYT 960 Query: 961 FEDYKLKVNRYIEKNRDNLVIHKLRNNIPLTALDYEALEKIFTGELGTAEDYEREFKDTP 1020 FEDYKLKVNRYIE+NRD++ I+KLRNNIPLTA DY +LE IFTGELGT EDYERE++DTP Sbjct: 961 FEDYKLKVNRYIEENRDHIAIYKLRNNIPLTAFDYNSLEHIFTGELGTPEDYEREYQDTP 1020 Query: 1021 FGLLVRKIAKLEYAAATAAFSEFINDQSLSQGQIVFVKKVIDYIVQNGYIDNVTELTKPP 1080 FGLLVRKIAK+EY AA AAFSEFINDQSLSQGQIVFVKKVIDYI+QNGYI+NV+ L KPP Sbjct: 1021 FGLLVRKIAKMEYEAACAAFSEFINDQSLSQGQIVFVKKVIDYIMQNGYIENVSTLMKPP 1080 Query: 1081 FDKPQSFVKLFDGTKQRRLVETVAQIKENAVKIIG 1115 FDKP+SF+KLFDG+KQ+++VE V Q+++NAVKI+G Sbjct: 1081 FDKPKSFIKLFDGSKQKQIVEAVNQVRDNAVKIVG 1115 >C1Q679.1 C1Q679_9ACTN Helicase, type I site-specific restriction-modification system restriction subunit Length = 1125 Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 579/1131 (51%), Positives = 776/1131 (68%), Gaps = 36/1131 (3%) Query: 4 NFEFLLGQPEYKLFANACIEAERVLATSPAMAAVGSRKAFELAVKWVYAADNTITMPYKD 63 NF FL EY++F+ AC +AER A+SPAM A+ RKA ELAVKWVYAAD T+ P++ Sbjct: 2 NFSFLKDIKEYEMFSGACEDAERTFASSPAMCALACRKAMELAVKWVYAADETMNEPWRS 61 Query: 64 NLQALIHEPTFKFAMENQTWGKLPYIIKLGNLAVHTDKXXXXXXXXXXXXXXFEFIQWLD 123 NL +LIHE +FK AM+ TWG+L YI KLGN A HT + F F++W+D Sbjct: 62 NLASLIHEASFKNAMDTTTWGQLRYIWKLGNNAAHTQRQIDARDALAALAGLFNFVEWID 121 Query: 124 YCYGVNYEERHFAEDNIPVEKVVLDEARIK-------EKDSLIEQKESEIEALRAQIAAM 176 YCYG +YEERHF IPV K LDE +++ EKD+ I Q E ++ A RAQ Sbjct: 122 YCYGPSYEERHFDPKAIPVLKQALDEQKLRKTLQENAEKDARIAQLEEQVRAQRAQ---- 177 Query: 177 SDRLTADKEQHQEERHFTPEDISEFRTRKKYIDVDLKLLGWTLGDDAREEVELYGMPNDE 236 + KEQ EE HF P++I E+ TRK+YIDVDL+ GW L D + E E+ GMPN Sbjct: 178 ---FSETKEQRPEETHFNPDEIPEYETRKRYIDVDLEYAGWNLDDSVKTEAEVSGMPNPT 234 Query: 237 GKGYADYVLYGKDGLPLAIIEAKRTSKDPKAGTHQAKLYADCLERMTGRRPMMFTSNGFE 296 G G+ DYVL G++G PLAI+EAKRT DP G QA+LYA+CLE+ G RP +F SNGFE Sbjct: 235 GTGFIDYVLLGRNGKPLAIVEAKRTMYDPLKGEQQARLYANCLEKKYGYRPFVFLSNGFE 294 Query: 297 TNLWDDVTSPQRKVSGVFSKSDLQKLMNRRNERKVLDEVVIDDNIT----DRYYQKEAIR 352 T DD T+ R SGVF + DL++LMNRR + K L V ++ +I +RYYQ EAI Sbjct: 295 TRFMDDGTAAPRACSGVFGREDLERLMNRRGKVKNLSTVPVNRDIAGGGRNRYYQVEAIE 354 Query: 353 AVCDNIMTGHRRSLLVMATGTGKTRTASSLTDVLSRGGYVTNILFLADRKALVKQAKDDF 412 AVC N+ GHRRSLLVMATGTGKTRTA+ L DVLSR G VTN+LFLADR ALV+QAK+ F Sbjct: 355 AVCQNMEEGHRRSLLVMATGTGKTRTAAGLVDVLSRAGAVTNVLFLADRVALVRQAKNAF 414 Query: 413 KNYLPDMSLCNLLSNKDDKT----ARIVFSTYPTMLNAIDRAKSDDGKRLFTPAHFDLII 468 +NYL M++CNL DDK ARIVFSTYPT+LNA+D K D RLFTPAHFDLII Sbjct: 415 QNYLTTMTVCNLCET-DDKAKNVDARIVFSTYPTILNAVDDVKRDGDARLFTPAHFDLII 473 Query: 469 VDEAHRSIFKKFRAIFEYFDGYVVGLTATPKTDVDRNTYDFFEMESGVPTYAYPYETAVE 528 VDEAHRSIFKK+RAIF+YFD VVGLTATPK +VDRNTYDFF++E G+PTY Y Y TAVE Sbjct: 474 VDEAHRSIFKKYRAIFDYFDSPVVGLTATPKDEVDRNTYDFFQVERGIPTYLYEYATAVE 533 Query: 529 MDRVLVPYHNIEVTTKVLEQGITYDTLSADDKARYEEDFTEEDG-EMPEFIPSPAINDFI 587 D+VLVPY+NIEV T L +GITYD LS +D+ RY++D+ E G P+++ + A++ F+ Sbjct: 534 KDKVLVPYYNIEVQTNFLSKGITYDELSEEDRQRYDDDWEEAQGTSAPDYVEASALDRFV 593 Query: 588 FNQATVDQVLEDLMTQGIKVSGGDRLGKTIIFAQNKNHAQYIVERFNKLYPQYKGD-FAK 646 FN+ T+D VL LM +GIK+ GG+ +GKTIIFAQN+ HA+ IV+RFN+LYP++ F K Sbjct: 594 FNEHTIDLVLTTLMDEGIKIKGGEHIGKTIIFAQNRKHAEIIVKRFNELYPKFGAQGFCK 653 Query: 647 RIVSEDDYTQSLIDDFKLANKSPYIAVSVDMLDTGIDVPEIVNLVFFKRIRSKTKFWQMI 706 R+V DDY ++I DF+ + P I VSVDM+DTGIDVPE+VNLVFFK+++SK KFWQMI Sbjct: 654 RVVHTDDYAPTVITDFE-TKEMPTITVSVDMMDTGIDVPEVVNLVFFKQVKSKVKFWQMI 712 Query: 707 GRGTRLCKDLF------GEGEDKTHFVIFDYLGNFEFFRQHKEGLQGNEAYSLSEVIFAK 760 GRGTRLC+ + GE EDK HF IFD+ GNFEFFRQ ++ +G S+ E +F + Sbjct: 713 GRGTRLCEGIHAQDKVSGEYEDKKHFFIFDWCGNFEFFRQEQKLAEGANPESMQEKVFKR 772 Query: 761 RIRLIQHLQQAVFIDEPYQSIRTDLIEIVIGQIQALNTEL-VSVKMQLQYIEKYKHQAAF 819 + L Q LQ A F + YQ R +++ + ++Q++ L +VK+ ++ ++K+ ++ Sbjct: 773 QALLAQALQGADFASDDYQEWRVRVVQEMAVKVQSVKEPLTAAVKLHIREVDKFSQVPSY 832 Query: 820 VCLLEQDQSNLIKYVAPIVYMDDADEHAKRFDNLLYGLMLAQAEEAPQYKKSKKQLIDVA 879 L + D ++L K VAP+V D +E + RFD L+Y M+ + + +++ +A Sbjct: 833 QVLEDVDIADLNK-VAPLVRADGEEELSLRFDALMYAYMVVLI-SGTNTENHRTRVVGIA 890 Query: 880 TTLLQRATIPQVRDKLTLIQTIGTEEFWDSANLLDFEKVRQELRGLIKFIVDEGGKNPIY 939 L +A+IPQVR+K+ L++ + +E F +SA+L+ E+VR ELR L+KF++ + + Sbjct: 891 VRLQNKASIPQVREKMDLLKRVTSEGFLESASLITLEEVRVELRDLMKFLIGDSRPLMVE 950 Query: 940 TNLADEVLEVHEGKAMYEAYTFEDYKLKVNRYIEKNRDNLVIHKLRNNIPLTALDYEALE 999 T + D V+ EG A+ FEDYKLKV+RYI +N ++ VI K+ +N +T+ + LE Sbjct: 951 TRVTDSVVGRCEGDAISPKEDFEDYKLKVSRYIAQNANHTVIAKIHHNQQMTSFELNELE 1010 Query: 1000 KIFTGELGTAEDYEREFKDTPFGLLVRKIAKLEYAAATAAFSEFINDQSLSQGQIVFVKK 1059 +IFT ELG DY + DTPFG LVR++A L + AA AF+EF+ D+SLS+ Q+ FV K Sbjct: 1011 RIFTVELGNEADYRAAYGDTPFGKLVRQVAGLSHEAAMDAFAEFLGDESLSRQQMDFVHK 1070 Query: 1060 VIDYIVQNGYIDNVTELTKPPFDKPQSFVKLFDGTKQRRLVETVAQIKENA 1110 ++DY+ NG++D + +L KPPFD+PQSFV+LFDG +QRRLV+ + + +NA Sbjct: 1071 IVDYVETNGFMD-LADLGKPPFDQPQSFVRLFDGRRQRRLVQIIQSVNDNA 1120 >Q5L349.1 Q5L349_GEOKA Type I restriction-modification system R subunit (Endonuclease) EC=3.1.21.3 Length = 1112 Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/1124 (49%), Positives = 762/1124 (67%), Gaps = 25/1124 (2%) Query: 3 ANFEFLLGQPEYKLFANACIEAERVLATSPAMAAVGSRKAFELAVKWVYAADNTITMPYK 62 +NF FL+G+P Y+ F NAC+EAE+ L SPA A+ +R+A ELAVKWVY+ D+ + +PY+ Sbjct: 2 SNFHFLVGKPHYESFTNACLEAEKSLVVSPATCAILTRRALELAVKWVYSFDSALKVPYQ 61 Query: 63 DNLQALIHEPTFKFAMENQTWGKLPYIIKLGNLAVHTDKXXXXXXXXXXXXXXFEFIQWL 122 DNL +LIH+ F ++ L YI+KLGN+AVHT+ +F+ W+ Sbjct: 62 DNLSSLIHDNVFLSIIDEDLLPLLRYIVKLGNVAVHTNSMITREEAILSLHNLHQFVSWI 121 Query: 123 DYCYGVNYEERHFAEDNIPV--EKVVLDEA------RIKEKDSLIEQKESEIEALRAQIA 174 DYCY Y F E +P+ EK E R+ KD +E+ E E LRA Sbjct: 122 DYCYSDEYTATDFDESLLPIGEEKRERPEELKDLYERLSSKDKRLEEMMKENEQLRAL-- 179 Query: 175 AMSDRLTADKEQHQEERHFTPEDISEFRTRKKYIDVDLKLLGWTLGDDAREEVELYGMPN 234 LTA +E++ +E HF +++SE+ TRKKYID+DLKL GW D E + GMPN Sbjct: 180 -----LTAKREENTKEYHFQVDELSEWETRKKYIDLDLKLAGWEFKKDVIVEYPVVGMPN 234 Query: 235 DEGKGYADYVLYGKDGLPLAIIEAKRTSKDPKAGTHQAKLYADCLERMTGRRPMMFTSNG 294 EG GY DYVL+G +G PLA+IEAKRT+ DP G QAKLYADC+E+M G+ P++F +NG Sbjct: 235 QEGVGYVDYVLFGDNGKPLAVIEAKRTTADPNKGKQQAKLYADCIEKMHGQPPIIFYTNG 294 Query: 295 FETNLWDDVTSPQRKVSGVFSKSDLQKLMNRRNERKVLDEVVIDDNITDRYYQKEAIRAV 354 FET +WDD+ P R+VSG ++K +L L++RR +K L V I+DNI +RYYQKEA+ AV Sbjct: 295 FETYMWDDLNYPARRVSGFYNKEELSLLIDRRTMKKPLKNVQINDNIANRYYQKEAVLAV 354 Query: 355 CDNIMTGHRRSLLVMATGTGKTRTASSLTDVLSRGGYVTNILFLADRKALVKQAKDDFKN 414 CD + R++LLVMATG+GKTRTA S+ DVL+R +V NILFLADRK LV QAK+ F + Sbjct: 355 CDALENKRRKALLVMATGSGKTRTAISIVDVLTRHNWVKNILFLADRKTLVTQAKNSFSH 414 Query: 415 YLPDMSLCNLLSNKDD-KTARIVFSTYPTMLNAIDRAKSDDGKRLFTPAHFDLIIVDEAH 473 LP+++LCNLL NKD+ + +R+VFSTYPTM+NAID AK DG+RLFT HFDLII+DE+H Sbjct: 415 LLPNLTLCNLLDNKDNPEESRMVFSTYPTMMNAIDDAKRKDGRRLFTVGHFDLIIIDESH 474 Query: 474 RSIFKKFRAIFEYFDGYVVGLTATPKTDVDRNTYDFFEMESGVPTYAYPYETAVEMDRVL 533 RSI+KK+RAIF+YFD ++GLTATPK ++DRNTY+ F++E+GVPTYAY + AV+ D L Sbjct: 475 RSIYKKYRAIFDYFDAILLGLTATPKDEIDRNTYEVFDLENGVPTYAYELDQAVQ-DGYL 533 Query: 534 VPYHNIEVTTKVLEQGITYDTLSADDKARYEEDFTEEDGEMPEFIPSPAINDFIFNQATV 593 V Y IE K LE GI YD LS ++K RYEE F D E+ E I S A+N+++FN T+ Sbjct: 534 VDYRTIETKLKFLEDGIHYDELSDEEKERYEETF---DDEVGEDIDSTALNEWLFNDDTI 590 Query: 594 DQVLEDLMTQGIKVSGGDRLGKTIIFAQNKNHAQYIVERFNKLYPQYKGDFAKRIVSEDD 653 D VL DLM +GI+V GGD+LGKTIIFA+N HA+ IVERF++L+P+YKG FA+ I + Sbjct: 591 DTVLRDLMEKGIRVEGGDKLGKTIIFAKNHRHAERIVERFDQLFPEYKGGFARVIDYSVN 650 Query: 654 YTQSLIDDFKLANKSPYIAVSVDMLDTGIDVPEIVNLVFFKRIRSKTKFWQMIGRGTRLC 713 Y Q+LIDDF NK P IAVSVDMLDTG+D+PE+VNLVFFK++RSK+KFWQMIGRGTRLC Sbjct: 651 YYQTLIDDFSDRNKWPQIAVSVDMLDTGVDIPEVVNLVFFKKVRSKSKFWQMIGRGTRLC 710 Query: 714 KDLFGEGEDKTHFVIFDYLGNFEFFRQHKEGLQGNEAYSLSEVIFAKRIRLIQHLQQAVF 773 KDLFG G+DKTHF+IFDY GNFEFFR++ +G++G SL+E +F +I +I+ LQ + Sbjct: 711 KDLFGVGQDKTHFLIFDYCGNFEFFRENPKGIEGKAVESLTERLFNAKIEIIKELQHLQY 770 Query: 774 IDEPYQSIRTDLIEIVIGQIQALNTELVSVKMQLQYIEKYKHQAAFVCLLEQDQSNLIKY 833 +E Y + R +LI+ V+ +I LN E V+ +QY+ K+K++ + L D + + ++ Sbjct: 771 QEEEYIAYRNELIDEVLAEINKLNEENFRVRQHIQYVHKFKNRTKWDSLTAIDVNEIKEH 830 Query: 834 VAPIVYMDDADEHAKRFDNLLYGLMLAQAEEAPQYKKSKKQLIDVATTLLQRATIPQVRD 893 ++P++ + DE AKRFD L+Y + LA+ + K + +I A L + +IPQV + Sbjct: 831 LSPLIVPLNDDELAKRFDLLMYTIELAKL-QTKNATKPIRSVIRTAEALSKLGSIPQVME 889 Query: 894 KLTLIQTIGTEEFWDSANLLDFEKVRQELRGLIKFIVDEGGKNPIYTNLADEVLEVHEGK 953 + +I+ + TEEFW A++ + E VR+ LR L+KF+ E K YTN D++LEV E Sbjct: 890 QKYIIEKVQTEEFWSEADIFELEAVREALRDLVKFLEKETQK-IYYTNFKDQILEVKENG 948 Query: 954 AMYEAYTFEDYKLKVNRYIEKNRDNLVIHKLRNNIPLTALDYEALEKIFTGELGTAEDYE 1013 M+ ++Y+ KV Y+ ++RD + I+KLRNN LT D + LE I ELGT +DY+ Sbjct: 949 PMFNVNDLKNYRKKVEHYLHEHRDQMAIYKLRNNKKLTVQDLKTLEHILWSELGTKDDYQ 1008 Query: 1014 REFKDTPFGLLVRKIAKLEYAAATAAFSEFINDQSLSQGQIVFVKKVIDYIVQNGYIDNV 1073 REF DTP LVR+I L+ AA AFSEF++ + L+ Q FVK ++DY V+NG +D Sbjct: 1009 REFGDTPITKLVRQIVGLDPQAANEAFSEFLSSERLNIQQSRFVKLIVDYFVKNGVMDKR 1068 Query: 1074 TELTKPPFDKPQSFVKLFDGT--KQRRLVETVAQIKENAVKIIG 1115 L + PF S V+LF R+++ + +I N+ I+G Sbjct: 1069 V-LQEEPFKTVGSIVELFQDNMDDARKIIRIIDEINRNSEDIVG 1111 >B4BSJ3.1 B4BSJ3_9BACI Type III restriction protein res subunit Length = 1084 Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/1096 (49%), Positives = 741/1096 (67%), Gaps = 25/1096 (2%) Query: 31 SPAMAAVGSRKAFELAVKWVYAADNTITMPYKDNLQALIHEPTFKFAMENQTWGKLPYII 90 SPA A+ +R+A ELAVKWVY+ D+ + +PY+DNL +LIH+ F ++ L YI+ Sbjct: 2 SPATCAILTRRALELAVKWVYSFDSALKVPYQDNLSSLIHDNVFLSIIDEDLLPLLRYIV 61 Query: 91 KLGNLAVHTDKXXXXXXXXXXXXXXFEFIQWLDYCYGVNYEERHFAEDNIPV--EKVVLD 148 KLGN+AVHT+ +F+ W+DYCY Y F E +P+ EK Sbjct: 62 KLGNVAVHTNSMITREEAILSLHNLHQFVSWIDYCYSDEYTATDFDESLLPIGEEKRERP 121 Query: 149 EA------RIKEKDSLIEQKESEIEALRAQIAAMSDRLTADKEQHQEERHFTPEDISEFR 202 E R+ KD +E+ E E LRA LTA +E + +E HF +++SE+ Sbjct: 122 EELKDLYERLSSKDKRLEEMVKENEQLRAL-------LTAKREANTKEYHFQVDELSEWE 174 Query: 203 TRKKYIDVDLKLLGWTLGDDAREEVELYGMPNDEGKGYADYVLYGKDGLPLAIIEAKRTS 262 TRKKYID+DLKL GW D E + GMPN EG GY DYVL+G +G PLA+IEAKRT+ Sbjct: 175 TRKKYIDLDLKLAGWEFKKDVIVEYPVVGMPNQEGVGYVDYVLFGDNGKPLAVIEAKRTT 234 Query: 263 KDPKAGTHQAKLYADCLERMTGRRPMMFTSNGFETNLWDDVTSPQRKVSGVFSKSDLQKL 322 DP G QAKLYADC+E+M G+RP++F +NGFET +WDD+ P R+VSG ++K +L L Sbjct: 235 ADPNKGKQQAKLYADCIEKMHGQRPIIFYTNGFETYIWDDLNYPARRVSGFYNKEELSLL 294 Query: 323 MNRRNERKVLDEVVIDDNITDRYYQKEAIRAVCDNIMTGHRRSLLVMATGTGKTRTASSL 382 ++RR +K L V I+DNIT+RYYQKEA+ AVCD + R++LLVMATG+GKTRTA S+ Sbjct: 295 IDRRTMKKPLKNVQINDNITNRYYQKEAVLAVCDALEKKRRKALLVMATGSGKTRTAISI 354 Query: 383 TDVLSRGGYVTNILFLADRKALVKQAKDDFKNYLPDMSLCNLLSNKDD-KTARIVFSTYP 441 DVL+R +V NILFL DRK LV QAK+ F + LP+++LCNLL NKD+ + +R+VFSTYP Sbjct: 355 VDVLTRHNWVKNILFLTDRKTLVTQAKNSFSHLLPNLTLCNLLDNKDNPEESRMVFSTYP 414 Query: 442 TMLNAIDRAKSDDGKRLFTPAHFDLIIVDEAHRSIFKKFRAIFEYFDGYVVGLTATPKTD 501 TM+NAID AK DGKRLFT HFDLIIVDE+HRSI+KK+RAIF+YFD ++GLTATPK + Sbjct: 415 TMMNAIDEAKRKDGKRLFTVGHFDLIIVDESHRSIYKKYRAIFDYFDALLLGLTATPKDE 474 Query: 502 VDRNTYDFFEMESGVPTYAYPYETAVEMDRVLVPYHNIEVTTKVLEQGITYDTLSADDKA 561 +DRNTY+ F++E+GVPTYAY + AV+ D LV Y IE K LE+GI YD LS ++K Sbjct: 475 IDRNTYEVFDLENGVPTYAYELDQAVQ-DGYLVDYRTIETKLKFLEEGIHYDELSDEEKE 533 Query: 562 RYEEDFTEEDGEMPEFIPSPAINDFIFNQATVDQVLEDLMTQGIKVSGGDRLGKTIIFAQ 621 RYEE F D E+ E I S A+N+++FN T+D VL DLM +GI+V GGD+LGKTIIFA+ Sbjct: 534 RYEETF---DDEVGEDIDSAALNEWLFNDDTIDTVLRDLMEKGIRVEGGDKLGKTIIFAK 590 Query: 622 NKNHAQYIVERFNKLYPQYKGDFAKRIVSEDDYTQSLIDDFKLANKSPYIAVSVDMLDTG 681 N HA+ IVERF++L+ +YKG FA+ I +Y Q LIDDF NK P IAVSVDMLDTG Sbjct: 591 NHRHAERIVERFDQLFTEYKGGFARVIDYSVNYYQILIDDFSDRNKWPQIAVSVDMLDTG 650 Query: 682 IDVPEIVNLVFFKRIRSKTKFWQMIGRGTRLCKDLFGEGEDKTHFVIFDYLGNFEFFRQH 741 +D+PE+VNLVFFK++RSK+KFWQMIGRGTRLCKDLFG G+DKTHF+IFDY GNFEFFR++ Sbjct: 651 VDIPEVVNLVFFKKVRSKSKFWQMIGRGTRLCKDLFGVGQDKTHFLIFDYCGNFEFFREN 710 Query: 742 KEGLQGNEAYSLSEVIFAKRIRLIQHLQQAVFIDEPYQSIRTDLIEIVIGQIQALNTELV 801 +G++G SL+E +F ++ +I+ LQ + +E Y + R +LI+ V +I LN E Sbjct: 711 PKGIEGKAVESLTERLFNAKVEIIKELQHLQYQEEEYIAHRNELIDEVQAEINKLNEENF 770 Query: 802 SVKMQLQYIEKYKHQAAFVCLLEQDQSNLIKYVAPIVYMDDADEHAKRFDNLLYGLMLAQ 861 V+ +QY+ K+K++ + L D + + ++++P++ + DE AKRFD L+Y + LA+ Sbjct: 771 RVRQHIQYVHKFKNRTKWDSLTAIDVNEIKEHISPLIVPLNDDELAKRFDLLMYTIELAK 830 Query: 862 AEEAPQYKKSKKQLIDVATTLLQRATIPQVRDKLTLIQTIGTEEFWDSANLLDFEKVRQE 921 + K + +I A L + +IPQV ++ +I+ + TEEFW A++ + E VR+ Sbjct: 831 L-QTKNATKPIRSVIRTAEALSKLGSIPQVMEQKYIIEKVQTEEFWSEADIFELEAVREA 889 Query: 922 LRGLIKFIVDEGGKNPIYTNLADEVLEVHEGKAMYEAYTFEDYKLKVNRYIEKNRDNLVI 981 LR L+KF+ + K YTN D++LEV E M++ ++Y+ KV Y+ ++RD + I Sbjct: 890 LRDLVKFLEKQTQK-IYYTNFKDQILEVKENGPMFDVNDLKNYRKKVEHYLHEHRDQMAI 948 Query: 982 HKLRNNIPLTALDYEALEKIFTGELGTAEDYEREFKDTPFGLLVRKIAKLEYAAATAAFS 1041 +KLRNN LT D + LE I ELGT EDYE+EF DTP LVR+I L+ AA AFS Sbjct: 949 YKLRNNKKLTVQDLKTLEDILWKELGTREDYEKEFGDTPITKLVRQIVGLDPQAANEAFS 1008 Query: 1042 EFINDQSLSQGQIVFVKKVIDYIVQNGYIDNVTELTKPPFDKPQSFVKLFDGT--KQRRL 1099 EF++++ L+ Q FVK +IDY V+ G +D L + PF S V+LF R++ Sbjct: 1009 EFLSNERLNINQSRFVKLIIDYFVRYGVMDKKV-LQEEPFKTVGSIVELFKDNMDDARKI 1067 Query: 1100 VETVAQIKENAVKIIG 1115 + + +I +N+ I+G Sbjct: 1068 ISIIDEINKNSEDIVG 1083 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,402,106,635 Number of extensions: 275105105 Number of successful extensions: 937039 Number of sequences better than 1.0e-05: 852 Number of HSP's gapped: 934303 Number of HSP's successfully gapped: 869 Length of query: 1115 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 968 Effective length of database: 1,675,806,998 Effective search space: 1622181174064 Effective search space used: 1622181174064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)