BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0021.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8S5E4.1 A8S5E4_9CLOT Putative uncharacterized protein 343 6e-93 B8I7D9.1 B8I7D9_CLOCE Filamentation induced by cAMP protein Fic 325 3e-87 C2BD78.1 C2BD78_9FIRM Filamentation induced by cAMP protein Fic 192 3e-47 C2MUC1.1 C2MUC1_BACCE Filamentation induced by cAMP protein Fic 162 2e-38 B4SFK1.1 B4SFK1_PELPB Filamentation induced by cAMP protein Fic 148 6e-34 >A8S5E4.1 A8S5E4_9CLOT Putative uncharacterized protein Length = 254 Score = 343 bits (881), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 165/242 (68%), Positives = 196/242 (80%), Gaps = 1/242 (0%) Query: 4 VDYPELLRKKALYEQAKHTLPEVTVKSYVQAFELEYTHNSTAIEGNXXXXXXXXXXXXXX 63 ++YPELLRK+ LY+ + ++PE+T++SY QAFE+EYTHNSTAIEGN Sbjct: 1 MNYPELLRKRDLYQSGRASIPELTLQSYEQAFEIEYTHNSTAIEGNTLTLMETKVLLEDG 60 Query: 64 XSVGGKKLREIYEVINHNKAYQHVKACIEQGLLLDENIIKDIHAILMENIMVGGVYRNVE 123 ++GGK+LREIYE +NH KAY++VK CI + LDE IIK+IHA+LMENI VGG+YRNV+ Sbjct: 61 ITIGGKRLREIYETVNHQKAYRYVKECIAKEQPLDEKIIKEIHALLMENIFVGGIYRNVD 120 Query: 124 VYISGAAHTPPIPNEMYRQVQNFYADLADK-KPVNIIELAAWTHAEFVRIHPFADGNGRT 182 VYISGA HTPP P EMYRQV++FYADL K K +N IELAAWTHAEFVRIHPF DGNGRT Sbjct: 121 VYISGAQHTPPSPGEMYRQVKDFYADLTWKGKEMNPIELAAWTHAEFVRIHPFPDGNGRT 180 Query: 183 SRLIMNYQLLANGFLPISIAKESRLDYFNALEAYAVHRDLRPFADMMASLEEQQLDRYLG 242 SRLIMNYQLLANGF +SIAKESRLDYFNALEAYAV +L PFA+M+A L + Q+DRYLG Sbjct: 181 SRLIMNYQLLANGFPAVSIAKESRLDYFNALEAYAVEGNLAPFAEMVADLVDHQMDRYLG 240 Query: 243 MI 244 MI Sbjct: 241 MI 242 >B8I7D9.1 B8I7D9_CLOCE Filamentation induced by cAMP protein Fic Length = 253 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 155/246 (63%), Positives = 191/246 (77%) Query: 4 VDYPELLRKKALYEQAKHTLPEVTVKSYVQAFELEYTHNSTAIEGNXXXXXXXXXXXXXX 63 +D+ +L K+ LYE+ K TL EVT++SY AFE+E+THNSTAIEGN Sbjct: 1 MDFKRILDKQKLYEEGKDTLHEVTIESYNNAFEVEFTHNSTAIEGNTLTLMETKVVLEDG 60 Query: 64 XSVGGKKLREIYEVINHNKAYQHVKACIEQGLLLDENIIKDIHAILMENIMVGGVYRNVE 123 SVGGK LREIYEV+NH KA+ +VK CI++GL L E I+KDIHA++ ENI+VGG+YRN E Sbjct: 61 ISVGGKALREIYEVVNHKKAFHYVKQCIKEGLPLSEKIVKDIHALVTENIIVGGIYRNEE 120 Query: 124 VYISGAAHTPPIPNEMYRQVQNFYADLADKKPVNIIELAAWTHAEFVRIHPFADGNGRTS 183 V+ISGA+HTPP NEMY Q++NF+ADL KK +N IELAAWTHAEFVRIHPF DGNGRTS Sbjct: 121 VFISGASHTPPARNEMYIQIKNFFADLMYKKDLNPIELAAWTHAEFVRIHPFQDGNGRTS 180 Query: 184 RLIMNYQLLANGFLPISIAKESRLDYFNALEAYAVHRDLRPFADMMASLEEQQLDRYLGM 243 RLIMNYQL++ GFLPISIAKE+RLDY+NAL+ YA L FA+M+A LEE QLD+Y+ + Sbjct: 181 RLIMNYQLMSYGFLPISIAKENRLDYYNALDKYAAQGILDDFANMIAELEEAQLDKYISI 240 Query: 244 IERQRE 249 I Q + Sbjct: 241 IPEQNK 246 >C2BD78.1 C2BD78_9FIRM Filamentation induced by cAMP protein Fic Length = 260 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 6/235 (2%) Query: 23 LPEVTVKSYVQAFELEYTHNSTAIEGNXXXXXXXXXXXXXXXSVGGKKLREIYEVINHNK 82 LP+ T +S V F+L +TH ST IEGN S+GGK LRE+YEV N+ K Sbjct: 22 LPKETYQSIVDDFDLRFTHESTKIEGNTLSIAEVKTLLVDKVSIGGKDLRELYEVTNNQK 81 Query: 83 AYQHVKACIEQGLLLDENIIKDIHAILMENIMVGGVYRNVEVYISGAAHTPPIPNEMYRQ 142 AY+ +K +EQG LDE +IKD+H ++MENI+ GG+YR+ V I+GA +PP E+ Sbjct: 82 AYRLIKGRLEQGAALDEELIKDVHQVVMENIIEGGLYRSYNVRITGADFSPPDWTEVRTA 141 Query: 143 VQNFYADLADKKP-VNIIELAAWTHAEFVRIHPFADGNGRTSRLIMNYQLLANGFLPISI 201 ++ F +D KK +N IELA++ HAEFVRIHPF DGNGRT+RL++N+ L+ G+ P+ I Sbjct: 142 MKWFMSDFETKKSDLNPIELASYVHAEFVRIHPFQDGNGRTARLLLNFMLMKAGYQPVII 201 Query: 202 AKESRLDYFNALEAYAVHRDLRPFADMMAS-----LEEQQLDRYLGMIERQRERQ 251 + R Y+ +L YAV L F +++ LE+ +L+ Y M +++ R+ Sbjct: 202 EAKDRPIYYESLNDYAVTGSLENFYNLVLDKEKIILEDLKLEVYKVMKQQKIYRK 256 >C2MUC1.1 C2MUC1_BACCE Filamentation induced by cAMP protein Fic Length = 242 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 146/244 (59%), Gaps = 9/244 (3%) Query: 6 YPELLRKKALYEQAKHTLPEVTVKSYVQAFELEYTHNSTAIEGNXXXXXXXXXXXXXXXS 65 + ++ +KKAL + +K LP T+KS + LE+T++S AIEGN + Sbjct: 2 FEQIDQKKALLD-SKRPLPRYTIKSLREKLLLEWTYHSNAIEGNTLTINETKVVLEGI-T 59 Query: 66 VGGKKLREIYEVINHNKAYQHVKACIEQGLLLDENIIKDIHAILMENI--MVGGVYRNVE 123 VGGK LRE EVINH +A +V+ + +G L E IK++H ++++ I GVYR+ + Sbjct: 60 VGGKTLREHLEVINHREAVAYVEEIVHKGEPLSEWQIKNLHRLVLKGIDDAYAGVYRDQQ 119 Query: 124 VYISGAAHTPPIP---NEMYRQVQNFYADLADKKPVNIIELAAWTHAEFVRIHPFADGNG 180 V+ISGA+H PP P E QV +Y ++ K ++ +E A HA FV IHPF DGNG Sbjct: 120 VFISGASHVPPAPYLIQEQMEQVMTWYQ--SEAKSLHPVEHGAMLHAIFVGIHPFIDGNG 177 Query: 181 RTSRLIMNYQLLANGFLPISIAKESRLDYFNALEAYAVHRDLRPFADMMASLEEQQLDRY 240 RT+RL++N +L+ +GF P+ I +RL+Y++AL+ +D F ++A+ E L+ Y Sbjct: 178 RTARLLLNLELMKDGFPPVIIKVANRLEYYDALDKAHTSKDYHDFIQLVAAEVEDSLNLY 237 Query: 241 LGMI 244 L +I Sbjct: 238 LSVI 241 >B4SFK1.1 B4SFK1_PELPB Filamentation induced by cAMP protein Fic Length = 247 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 23 LPEVTVKSYVQAFELEYTHNSTAIEGNXXXXXXXXXXXXXXXSVGGKKLREIYEVINHNK 82 LP V + + L +T+NS AIEGN +VGGK +RE +E INH + Sbjct: 20 LPPEIVANLHEDLVLRWTYNSNAIEGNTLTLKETKVALEGI-TVGGKTIREHFEAINHRE 78 Query: 83 AYQHVKACIEQGLLLDENIIKDIHAILMENI--MVGGVYRNVEVYISGAAHTPPIPNEMY 140 A +V+A ++ L E IK IH ++++NI GVYR V I+GA H PP + Sbjct: 79 AIYYVEAMVQPHEPLTEWKIKSIHQLILKNIDDAHAGVYRKTNVIIAGADHVPPDALHVE 138 Query: 141 RQVQNFYADLADKKP-VNIIELAAWTHAEFVRIHPFADGNGRTSRLIMNYQLLANGFLPI 199 ++Q F ++ P ++ +E AA HA+FV+IHPF DGNGRTSRL+MN +L+ +G+ P+ Sbjct: 139 SEMQGFINWYKEQAPSLHPVERAARVHADFVKIHPFTDGNGRTSRLLMNLELMKDGYPPV 198 Query: 200 SIAKESRLDYFNALEAYAVHRDLRPFADMMASLEEQQLDRY 240 + E RL+Y+ AL+A +D PF ++A + E Y Sbjct: 199 VLPVEKRLEYYEALDAAHTKQDYEPFLALIAEVVEAGFKPY 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,385,309,257 Number of extensions: 52291000 Number of successful extensions: 114224 Number of sequences better than 1.0e-05: 390 Number of HSP's gapped: 114033 Number of HSP's successfully gapped: 390 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)