BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0342.0016.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0TCX9.1 B0TCX9_HELMI Putative uncharacterized protein                196   5e-49
B1DJQ9.1 B1DJQ9_9BACL Transcriptional repressor, CopY family          185   9e-46
B1HQ84.1 B1HQ84_LYSSC Putative uncharacterized protein                184   3e-45
B0A8J7.1 B0A8J7_9CLOT Putative uncharacterized protein                165   2e-39
A6NW55.1 A6NW55_9BACE Putative uncharacterized protein                152   7e-36

>B0TCX9.1 B0TCX9_HELMI Putative uncharacterized protein
          Length = 119

 Score =  196 bits (499), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 107/119 (89%)

Query: 1   MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60
           ME YKLFDAEYKFVS+IW+NEPINST LVKLC  KLGWKKSTTYTVL+KLCERGILQN++
Sbjct: 1   MEKYKLFDAEYKFVSIIWDNEPINSTELVKLCADKLGWKKSTTYTVLKKLCERGILQNKD 60

Query: 61  AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEEATK 119
           A V++L+KRE+ QRYES A+L+K FDGSLPKFLTAFL  R++S +EAE+LKRIIEEA K
Sbjct: 61  ATVTSLVKREDVQRYESRAVLEKTFDGSLPKFLTAFLSGRKLSEQEAEELKRIIEEAVK 119


>B1DJQ9.1 B1DJQ9_9BACL Transcriptional repressor, CopY family
          Length = 119

 Score =  185 bits (470), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 106/119 (89%)

Query: 1   MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60
           ME YKLFD+EYKF  LIW+NEPINST L KL  SKLGW KSTTYTVLRKLCERGIL+NE 
Sbjct: 1   MEAYKLFDSEYKFACLIWDNEPINSTELAKLSKSKLGWSKSTTYTVLRKLCERGILRNEQ 60

Query: 61  AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEEATK 119
           AVV++L+K+ EAQ+YES+ +++KAFDGSLP+FLTAFLG +++S KEAE+LK+IIEE+T+
Sbjct: 61  AVVTSLVKKTEAQKYESQTVVEKAFDGSLPQFLTAFLGGKKLSRKEAEELKQIIEESTQ 119


>B1HQ84.1 B1HQ84_LYSSC Putative uncharacterized protein
          Length = 120

 Score =  184 bits (466), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 106/119 (89%)

Query: 1   MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60
           MEPYKLFDAEYKF  LIW+NEPINST LVKL  + LGWKKSTTYTVLRKLC+RG+L+NE 
Sbjct: 1   MEPYKLFDAEYKFTCLIWDNEPINSTDLVKLSQAVLGWKKSTTYTVLRKLCKRGVLKNEE 60

Query: 61  AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEEATK 119
           A V++++K+E+AQ+YES+ +++K+F+GSLP+FLTAFLG + IS +EAE+LKRIIEEA K
Sbjct: 61  ATVTSIVKKEDAQKYESQMVVEKSFNGSLPQFLTAFLGGKGISNEEAEELKRIIEEAAK 119


>B0A8J7.1 B0A8J7_9CLOT Putative uncharacterized protein
          Length = 140

 Score =  165 bits (417), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 98/115 (85%)

Query: 1   MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60
           ME YKLFDAE KF+++IWE EPI S  LVK+C+ KLGWKKSTTYTVLRKL +RG+L+NEN
Sbjct: 21  MEKYKLFDAELKFMNIIWEEEPIKSGELVKVCNEKLGWKKSTTYTVLRKLAQRGVLKNEN 80

Query: 61  AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIE 115
            VV++++KRE+ Q YES  +++K+F GSLPKFLTAF GN++IS  EAE+LK++I+
Sbjct: 81  TVVTSIVKREDTQIYESHEVVEKSFGGSLPKFLTAFFGNKKISNDEAEELKKLID 135


>A6NW55.1 A6NW55_9BACE Putative uncharacterized protein
          Length = 120

 Score =  152 bits (385), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 95/117 (81%)

Query: 1   MEPYKLFDAEYKFVSLIWENEPINSTGLVKLCHSKLGWKKSTTYTVLRKLCERGILQNEN 60
           M+ YKLFDAEY+ + L+W  EP+NST L ++C  + GWKK TTY ++RKLC+RG L+NE+
Sbjct: 1   MDDYKLFDAEYRLMDLVWSEEPVNSTALSRMCLERFGWKKPTTYNLIRKLCQRGFLKNED 60

Query: 61  AVVSALIKREEAQRYESEALLDKAFDGSLPKFLTAFLGNRQISPKEAEQLKRIIEEA 117
           A V+AL+ R++ ++YESEA+++K+F GSLP F+ AFL  +++S +EAE+L+R+IEEA
Sbjct: 61  ATVTALVPRQQVEQYESEAVVEKSFGGSLPAFVAAFLRGKKLSQQEAEELRRMIEEA 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 670,405,308
Number of extensions: 23391137
Number of successful extensions: 62912
Number of sequences better than 1.0e-05: 150
Number of HSP's gapped: 63019
Number of HSP's successfully gapped: 150
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)