BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0012.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLJ9.1 B1DLJ9_9BACL Transaldolase EC=2.2.1.2 431 e-119 C2VEE7.1 C2VEE7_BACCE Transaldolase 404 e-111 B7IPP5.1 B7IPP5_BACC2 Putative transaldolase 404 e-111 C2UXU6.1 C2UXU6_BACCE Transaldolase 402 e-110 C2U023.1 C2U023_BACCE Transaldolase 402 e-110 >B1DLJ9.1 B1DLJ9_9BACL Transaldolase EC=2.2.1.2 Length = 222 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/221 (93%), Positives = 216/221 (97%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 MK FIDTAN+EDIKKAY++GVLSGVTTNPSLVAKEGVKFEDRIAEILR VPEVESVSAEV Sbjct: 1 MKLFIDTANLEDIKKAYKVGVLSGVTTNPSLVAKEGVKFEDRIAEILREVPEVESVSAEV 60 Query: 61 TPDAVTAEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFTVN 120 TPDA+TAEEMIAQA+ELIKINNYDKNITIKLPMTLAGLEACRYLT+KGVKTNVTLIFTVN Sbjct: 61 TPDALTAEEMIAQADELIKINNYDKNITIKLPMTLAGLEACRYLTKKGVKTNVTLIFTVN 120 Query: 121 QALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHVTR 180 QALLAARAGATYVSPFLGRLDDISEDGVQL+ KVAELFR+HNLDAQIIAASVRHPDHVTR Sbjct: 121 QALLAARAGATYVSPFLGRLDDISEDGVQLVAKVAELFRVHNLDAQIIAASVRHPDHVTR 180 Query: 181 VAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQ 221 VAMAGAHIAT+PFSVIEQISKHPLTDQG+EKFAADWKK Q Sbjct: 181 VAMAGAHIATVPFSVIEQISKHPLTDQGMEKFAADWKKTTQ 221 >C2VEE7.1 C2VEE7_BACCE Transaldolase Length = 222 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/222 (87%), Positives = 210/222 (94%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 MKFFIDTAN+EDIKKAY++GVL+GVTTNPSLVAKEGVKFEDRIAEI +TVP+VESVSAEV Sbjct: 1 MKFFIDTANLEDIKKAYKLGVLAGVTTNPSLVAKEGVKFEDRIAEICQTVPKVESVSAEV 60 Query: 61 TPDAVTAEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFTVN 120 TPDAVTAEEMIAQA ELIKIN DKN+TIKLPMTLAGLEACRYLT+KGVKTNVTLIFTVN Sbjct: 61 TPDAVTAEEMIAQAEELIKINGGDKNVTIKLPMTLAGLEACRYLTEKGVKTNVTLIFTVN 120 Query: 121 QALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHVTR 180 QALLAARAGATYVSPFLGRLDDISEDGV L+ K+AELF IH LD QIIAASVRHPDHVTR Sbjct: 121 QALLAARAGATYVSPFLGRLDDISEDGVLLVAKIAELFDIHQLDTQIIAASVRHPDHVTR 180 Query: 181 VAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQV 222 VAMAGAHIATIP+ VIEQ++ HPLTDQG+EKFAADW KAP++ Sbjct: 181 VAMAGAHIATIPYKVIEQLAMHPLTDQGMEKFAADWAKAPKL 222 >B7IPP5.1 B7IPP5_BACC2 Putative transaldolase Length = 222 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/222 (86%), Positives = 211/222 (95%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 MKFFIDTAN+EDIKKAY++GVL+GVTTNPSLVAKEGVKFEDRIAEI +TVP+VESVSAEV Sbjct: 1 MKFFIDTANLEDIKKAYKLGVLAGVTTNPSLVAKEGVKFEDRIAEICQTVPKVESVSAEV 60 Query: 61 TPDAVTAEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFTVN 120 TPDAVTAEEMIAQA ELIKIN+ DKN+TIKLPMTLAGLEACRYLT+KGVKTNVTLIFTVN Sbjct: 61 TPDAVTAEEMIAQAEELIKINDGDKNVTIKLPMTLAGLEACRYLTEKGVKTNVTLIFTVN 120 Query: 121 QALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHVTR 180 QALLAARAGATYVSPFLGRLDDISEDGV L+ K+AELF +H LD QIIAASVRHPDHVTR Sbjct: 121 QALLAARAGATYVSPFLGRLDDISEDGVLLVAKIAELFDVHQLDTQIIAASVRHPDHVTR 180 Query: 181 VAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQV 222 VAMAGAHIATIP+ VIEQ++ HPLTDQG+EKFAADW KAP++ Sbjct: 181 VAMAGAHIATIPYKVIEQLAMHPLTDQGIEKFAADWAKAPKL 222 >C2UXU6.1 C2UXU6_BACCE Transaldolase Length = 222 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/222 (86%), Positives = 209/222 (94%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 MKFFIDTAN+EDIKKAY++GVL+GVTTNPSLVAKEGVKFEDRIAEI + VP+VESVSAEV Sbjct: 1 MKFFIDTANLEDIKKAYKLGVLAGVTTNPSLVAKEGVKFEDRIAEICQAVPKVESVSAEV 60 Query: 61 TPDAVTAEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFTVN 120 TPDAVTAEEMIAQA ELIKIN DKN+TIKLPMTLAGLEACRYLT+KGVKTNVTLIFTVN Sbjct: 61 TPDAVTAEEMIAQAEELIKINGGDKNVTIKLPMTLAGLEACRYLTEKGVKTNVTLIFTVN 120 Query: 121 QALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHVTR 180 QALLAARAGATYVSPFLGRLDDISEDGV L+ K+AELF +H LD QIIAASVRHPDHVTR Sbjct: 121 QALLAARAGATYVSPFLGRLDDISEDGVLLVAKIAELFDVHQLDTQIIAASVRHPDHVTR 180 Query: 181 VAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQV 222 VAMAGAHIATIP+ VIEQ++ HPLTDQG+EKFAADW KAP++ Sbjct: 181 VAMAGAHIATIPYKVIEQLAMHPLTDQGMEKFAADWAKAPKL 222 >C2U023.1 C2U023_BACCE Transaldolase Length = 222 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/222 (86%), Positives = 209/222 (94%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 MKFFIDTAN+EDIKKAY++GVL+GVTTNPSLVAKEGVKFEDRIAEI + VP+VESVSAEV Sbjct: 1 MKFFIDTANLEDIKKAYKLGVLAGVTTNPSLVAKEGVKFEDRIAEICQAVPKVESVSAEV 60 Query: 61 TPDAVTAEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFTVN 120 TPDAVTAEEMIAQA ELIKIN DKN+TIKLPMTLAGLEACRYLT+KGVKTNVTLIFTVN Sbjct: 61 TPDAVTAEEMIAQAEELIKINGGDKNVTIKLPMTLAGLEACRYLTEKGVKTNVTLIFTVN 120 Query: 121 QALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHVTR 180 QALLAARAGATYVSPFLGRLDDISEDGV L+ K+AELF +H LD QIIAASVRHPDHVTR Sbjct: 121 QALLAARAGATYVSPFLGRLDDISEDGVLLVAKIAELFDVHQLDTQIIAASVRHPDHVTR 180 Query: 181 VAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQV 222 VAMAGAHIATIP+ VIEQ++ HPLTDQG+EKFAADW KAP++ Sbjct: 181 VAMAGAHIATIPYKVIEQLAMHPLTDQGMEKFAADWAKAPKL 222 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,141,944,599 Number of extensions: 39805371 Number of successful extensions: 154861 Number of sequences better than 1.0e-05: 1856 Number of HSP's gapped: 153753 Number of HSP's successfully gapped: 1856 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)