BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0009.p (453 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q97L39.1 Q97L39_CLOAB Amino acid permease, gene yifK 616 e-174 Q3A9D4.1 Q3A9D4_CARHZ Amino acid permease 590 e-167 C2VEL6.1 C2VEL6_BACCE Uncharacterized transporter 570 e-160 C2U095.1 C2U095_BACCE Uncharacterized transporter 570 e-160 C3BUT5.1 C3BUT5_9BACI Uncharacterized transporter 568 e-160 >Q97L39.1 Q97L39_CLOAB Amino acid permease, gene yifK Length = 460 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 298/451 (66%), Positives = 358/451 (79%) Query: 1 LEAKQLNRGLKTRHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYLLAGIIMFFVMRI 60 +E K+L+RGLK RHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAY +AGI M+ +MRI Sbjct: 1 MEKKELSRGLKARHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYGVAGIAMYIIMRI 60 Query: 61 MGEMLVLEPVTGSFATFAHKYIHPLAGFMTAWSYWFLWVTVGMAEVTAIGIYVGYWFPGI 120 MGEML LEP+ GSFA +A+KYI PLAG++TAW YWF+W+ VGM+E+TAIGIYV +WFP + Sbjct: 61 MGEMLYLEPLAGSFANYANKYISPLAGYITAWCYWFMWIAVGMSEITAIGIYVKFWFPAL 120 Query: 121 PQWLPALAGVGIIAAANLAAVKFYGEFEFWFAMIKVVAIAVMLVLGTGMIFFGLGNGGHP 180 P W+PAL GV I+AAAN+A+VKFYGEFEFWF++IKVV I VML++G G+IFFG+GN G P Sbjct: 121 PAWIPALIGVAILAAANMASVKFYGEFEFWFSLIKVVTIVVMLIVGVGLIFFGIGNHGVP 180 Query: 181 IGLSNLYSHXXXXXXXXXXXXXXXCIVTAAYQGIELVGITAGEAENPKYTLQKAIKNIIW 240 IG NL +H C+VTA+YQG+EL+GITAGEA++PK TL+KA KNIIW Sbjct: 181 IGFKNLTAHGGFFAGGLKGWLFALCMVTASYQGVELIGITAGEAQDPKNTLRKATKNIIW 240 Query: 241 RILIFYVGAVFVIVTIYPWDQVGEIGSPFVLTFAKXXXXXXXXXXNFVVLTAAMSGCNSG 300 RILIFYVGA+FVIVTIYPWD++ +GSP VLTFAK NFVVLTAAMSGCNSG Sbjct: 241 RILIFYVGAIFVIVTIYPWDKISTLGSPSVLTFAKIGIAAAAGIINFVVLTAAMSGCNSG 300 Query: 301 IYSAGRMLYTLAKNGQAPKFFGKVSKTGVPRNSIITTIALLLLGVLFNYLMPDSKLFLYI 360 IYS GRMLYTLA NGQAPKF GK++K GVP N I TT+ LL+GV+ NY+ P+SKLF+YI Sbjct: 301 IYSCGRMLYTLATNGQAPKFLGKLNKDGVPANGIRTTLVCLLIGVILNYIYPNSKLFVYI 360 Query: 361 YSASILPGMVPWFALAVSQFRFRAKWRSEMGAHPFKSLFFPVSNYIMVIFLSLVLVGMWF 420 YSAS+LPGM PWF L +SQ +FR + EM HPFKS FP +NYI+V +L LVL+GM F Sbjct: 361 YSASVLPGMAPWFVLCISQIKFRKEHAEEMKMHPFKSRLFPYANYIVVAYLCLVLIGMCF 420 Query: 421 NPDTRTSLIVGAVFILVVIAGYYVFGIGKGQ 451 N T+ L +GAVF +V Y+ FGI KG+ Sbjct: 421 NSSTQIPLFIGAVFCAIVTIAYFAFGIHKGK 451 >Q3A9D4.1 Q3A9D4_CARHZ Amino acid permease Length = 464 Score = 590 bits (1521), Expect = e-167, Method: Compositional matrix adjust. Identities = 290/448 (64%), Positives = 358/448 (79%), Gaps = 1/448 (0%) Query: 4 KQLNRGLKTRHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYLLAGIIMFFVMRIMGE 63 K+L RGL+ RHIELIALGGTIGVGLFMGSAST+KWAGPSV+LAY++AGI +FF+MR +GE Sbjct: 6 KELKRGLEARHIELIALGGTIGVGLFMGSASTLKWAGPSVILAYIIAGIFIFFIMRTIGE 65 Query: 64 MLVLEPVTGSFATFAHKYIHPLAGFMTAWSYWFLWVTVGMAEVTAIGIYVGYWFPGIPQW 123 ML +EP+TGSFAT+AHKYI PL G++TAWSYWF+WV VGM+EVTA+GIY+ +WFP +PQW Sbjct: 66 MLYIEPITGSFATYAHKYIGPLWGYLTAWSYWFMWVAVGMSEVTAVGIYMKFWFPTLPQW 125 Query: 124 LPALAGVGIIAAANLAAVKFYGEFEFWFAMIKVVAIAVMLVLGTGMIFFGLGNGGHPIGL 183 +P L + I+ ANLAAVK+YGEFEFWFA+IKVV I VM++LG GMIFFG GN G PIGL Sbjct: 126 VPGLIAILIVGTANLAAVKYYGEFEFWFALIKVVTIVVMIILGIGMIFFGFGNHGRPIGL 185 Query: 184 SNLYSHXXXXXXXXXXXXXXXCIVTAAYQGIELVGITAGEAENPKYTLQKAIKNIIWRIL 243 NLY H C+V AA+QG+ELVG+TAGEA++P+ TL++A++NI WRIL Sbjct: 186 ENLYIHGGFFPNGIKGFLFALCLVVAAFQGVELVGVTAGEAKDPQRTLRRAVQNITWRIL 245 Query: 244 IFYVGAVFVIVTIYPWDQVGEIGSPFVLTFAKXXXXXXXXXXNFVVLTAAMSGCNSGIYS 303 IFY+GA+FVIV +YPW+++G IGSPFVLTFAK NFVVLTAA+SGCNSGIYS Sbjct: 246 IFYIGAIFVIVALYPWNKLGTIGSPFVLTFAKVGIPAAASIINFVVLTAALSGCNSGIYS 305 Query: 304 AGRMLYTLAKNGQAPKFFGKVSKTGVPRNSIITTIALLLLGVLFNYLMPDSKLFLYIYSA 363 + RMLYTL++NGQAPKF KVS +GVP NS++ TIA LL+GV NY+ P KLF+YIYSA Sbjct: 306 SARMLYTLSQNGQAPKFLAKVSPSGVPVNSLLVTIACLLIGVALNYIAPQ-KLFVYIYSA 364 Query: 364 SILPGMVPWFALAVSQFRFRAKWRSEMGAHPFKSLFFPVSNYIMVIFLSLVLVGMWFNPD 423 S+LPGM+PWF + +SQ +FR +E+ HPFK+ P SNY+ +IFL LVLVGMW N D Sbjct: 365 SVLPGMMPWFVILISQLKFRKLKDNEIKDHPFKAPLSPYSNYLTIIFLVLVLVGMWLNSD 424 Query: 424 TRTSLIVGAVFILVVIAGYYVFGIGKGQ 451 TR SLI+GA F+ ++I YYVFGI K Q Sbjct: 425 TRLSLIIGAAFMALIIISYYVFGIDKKQ 452 >C2VEL6.1 C2VEL6_BACCE Uncharacterized transporter Length = 472 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 276/446 (61%), Positives = 343/446 (76%), Gaps = 1/446 (0%) Query: 4 KQLNRGLKTRHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYLLAGIIMFFVMRIMGE 63 K+L RGL+ RHI++IALGGTIGVGLFMGSASTIKW GPSV+LAY +AGI +FF+MR MGE Sbjct: 13 KELKRGLEARHIQMIALGGTIGVGLFMGSASTIKWTGPSVMLAYAIAGIFIFFIMRAMGE 72 Query: 64 MLVLEPVTGSFATFAHKYIHPLAGFMTAWSYWFLWVTVGMAEVTAIGIYVGYWFPGIPQW 123 ML +EP TGSFATF HKYIHPLAG+MTAWS WF WV VGM+E+ A+G Y+ YWFPG+P W Sbjct: 73 MLYMEPSTGSFATFGHKYIHPLAGYMTAWSNWFQWVIVGMSEIIAVGAYMQYWFPGLPAW 132 Query: 124 LPALAGVGIIAAANLAAVKFYGEFEFWFAMIKVVAIAVMLVLGTGMIFFGLGNGGHPIGL 183 +P + + I+ AANL +VK +GEFEFWFAMIK+V I +M++ G G+IFFG+GNGG IG+ Sbjct: 133 IPGVIAMVILGAANLISVKSFGEFEFWFAMIKIVTILLMIIAGFGLIFFGIGNGGEAIGI 192 Query: 184 SNLYSHXXXXXXXXXXXXXXXCIVTAAYQGIELVGITAGEAENPKYTLQKAIKNIIWRIL 243 SNL+S+ +V AYQG+EL+GITAGEA++PK TL +AI++ IWRIL Sbjct: 193 SNLWSNGGFFTGGFSGFFFALSLVVGAYQGVELIGITAGEAKDPKKTLTRAIQSTIWRIL 252 Query: 244 IFYVGAVFVIVTIYPWDQVGEIGSPFVLTFAKXXXXXXXXXXNFVVLTAAMSGCNSGIYS 303 IFY+GA+FVIVT+YPWDQ+ IGSPFV TFAK NFVV+TAAMSGCNSGIYS Sbjct: 253 IFYIGAIFVIVTVYPWDQLSTIGSPFVATFAKVGITAAAGLINFVVITAAMSGCNSGIYS 312 Query: 304 AGRMLYTLAKNGQAPKFFGKVSKTGVPRNSIITTIALLLLGVLFNYLMPDSKLFLYIYSA 363 AGRMLYTL NGQAPK+F K+S GVP + I L +GV+ +Y+ P + LF+Y+YSA Sbjct: 313 AGRMLYTLGVNGQAPKYFTKISSNGVPLFGTVGVIIGLAVGVVLSYIAPKN-LFVYVYSA 371 Query: 364 SILPGMVPWFALAVSQFRFRAKWRSEMGAHPFKSLFFPVSNYIMVIFLSLVLVGMWFNPD 423 S+LPGMVPWF + +SQ RFR + +EM HPFK F PV+NY+ + FL +VL+GMWFN D Sbjct: 372 SVLPGMVPWFVILISQIRFRKEKGAEMKDHPFKMPFAPVTNYLTIAFLIMVLIGMWFNDD 431 Query: 424 TRTSLIVGAVFILVVIAGYYVFGIGK 449 TR SL+VG VF+ +V +Y FGIGK Sbjct: 432 TRISLVVGIVFLAIVTISFYAFGIGK 457 >C2U095.1 C2U095_BACCE Uncharacterized transporter Length = 472 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 276/446 (61%), Positives = 343/446 (76%), Gaps = 1/446 (0%) Query: 4 KQLNRGLKTRHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYLLAGIIMFFVMRIMGE 63 K+L RGL+ RHI++IALGGTIGVGLFMGSASTIKW GPSV+LAY +AGI +FF+MR MGE Sbjct: 13 KELKRGLEARHIQMIALGGTIGVGLFMGSASTIKWTGPSVMLAYAIAGIFIFFIMRAMGE 72 Query: 64 MLVLEPVTGSFATFAHKYIHPLAGFMTAWSYWFLWVTVGMAEVTAIGIYVGYWFPGIPQW 123 ML +EP TGSFATF HKYIHPLAG+MTAWS WF WV VGM+E+ A+G Y+ YWFPG+P W Sbjct: 73 MLYMEPSTGSFATFGHKYIHPLAGYMTAWSNWFQWVIVGMSEIIAVGAYMQYWFPGLPAW 132 Query: 124 LPALAGVGIIAAANLAAVKFYGEFEFWFAMIKVVAIAVMLVLGTGMIFFGLGNGGHPIGL 183 +P + + I+ AANL +VK +GEFEFWFAMIK+V I +M++ G G+IFFG+GNGG IG+ Sbjct: 133 IPGVIAMVILGAANLISVKSFGEFEFWFAMIKIVTILLMIIAGFGLIFFGIGNGGEAIGI 192 Query: 184 SNLYSHXXXXXXXXXXXXXXXCIVTAAYQGIELVGITAGEAENPKYTLQKAIKNIIWRIL 243 SNL+S+ +V AYQG+EL+GITAGEA++PK TL +AI++ IWRIL Sbjct: 193 SNLWSNGGFFTGGFSGFFFALSLVVGAYQGVELIGITAGEAKDPKKTLTRAIQSTIWRIL 252 Query: 244 IFYVGAVFVIVTIYPWDQVGEIGSPFVLTFAKXXXXXXXXXXNFVVLTAAMSGCNSGIYS 303 IFY+GA+FVIVT+YPWDQ+ IGSPFV TFAK NFVV+TAAMSGCNSGIYS Sbjct: 253 IFYIGAIFVIVTVYPWDQLSTIGSPFVATFAKVGITAAAGLINFVVITAAMSGCNSGIYS 312 Query: 304 AGRMLYTLAKNGQAPKFFGKVSKTGVPRNSIITTIALLLLGVLFNYLMPDSKLFLYIYSA 363 AGRMLYTL NGQAPK+F K+S GVP + I L +GV+ +Y+ P + LF+Y+YSA Sbjct: 313 AGRMLYTLGVNGQAPKYFTKISSNGVPLFGTVGVIIGLAVGVVLSYIAPKN-LFVYVYSA 371 Query: 364 SILPGMVPWFALAVSQFRFRAKWRSEMGAHPFKSLFFPVSNYIMVIFLSLVLVGMWFNPD 423 S+LPGMVPWF + +SQ RFR + +EM HPFK F PV+NY+ + FL +VL+GMWFN D Sbjct: 372 SVLPGMVPWFVILISQIRFRKEKGAEMKDHPFKMPFAPVTNYLTIAFLIMVLIGMWFNDD 431 Query: 424 TRTSLIVGAVFILVVIAGYYVFGIGK 449 TR SL+VG VF+ +V +Y FGIGK Sbjct: 432 TRISLVVGIVFLAIVTISFYAFGIGK 457 >C3BUT5.1 C3BUT5_9BACI Uncharacterized transporter Length = 474 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 276/449 (61%), Positives = 344/449 (76%), Gaps = 1/449 (0%) Query: 1 LEAKQLNRGLKTRHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYLLAGIIMFFVMRI 60 +E K+L RGL+ RHI++IALGGTIGVGLFMGSASTIKW GPSV+LAY +AGI +FF+MR Sbjct: 12 VENKELKRGLEARHIQMIALGGTIGVGLFMGSASTIKWTGPSVMLAYAIAGIFIFFIMRA 71 Query: 61 MGEMLVLEPVTGSFATFAHKYIHPLAGFMTAWSYWFLWVTVGMAEVTAIGIYVGYWFPGI 120 MGEML +EP TGSFATF HKYIHPLAG+MTAWS WF WV VGM+E+ A+G Y+ YWFP + Sbjct: 72 MGEMLYVEPGTGSFATFGHKYIHPLAGYMTAWSNWFQWVIVGMSEIIAVGAYMQYWFPDL 131 Query: 121 PQWLPALAGVGIIAAANLAAVKFYGEFEFWFAMIKVVAIAVMLVLGTGMIFFGLGNGGHP 180 P W+P + + I+ AANL +VK +GEFEFWFAMIK+V I +M++ G G+IFFG GNGG+ Sbjct: 132 PAWVPGIITMVILGAANLISVKSFGEFEFWFAMIKIVTIVLMIIAGVGLIFFGFGNGGNA 191 Query: 181 IGLSNLYSHXXXXXXXXXXXXXXXCIVTAAYQGIELVGITAGEAENPKYTLQKAIKNIIW 240 IGLSNL+ + +V AYQG+EL+GITAGEA++P+ TL KAI++ IW Sbjct: 192 IGLSNLWENGGFFTGGWSGFFFALSLVVGAYQGVELIGITAGEAKDPRKTLTKAIQSTIW 251 Query: 241 RILIFYVGAVFVIVTIYPWDQVGEIGSPFVLTFAKXXXXXXXXXXNFVVLTAAMSGCNSG 300 RILIFY+GA+FVIVT+YPWDQ+ IGSPFV TFAK NFVV+TAAMSGCNSG Sbjct: 252 RILIFYIGAIFVIVTVYPWDQLSSIGSPFVATFAKVGITAAAGLINFVVITAAMSGCNSG 311 Query: 301 IYSAGRMLYTLAKNGQAPKFFGKVSKTGVPRNSIITTIALLLLGVLFNYLMPDSKLFLYI 360 IYSAGRMLYTL NGQAPK+F KVS+ GVP I + L +GV+ +Y+ P + LF+Y+ Sbjct: 312 IYSAGRMLYTLGMNGQAPKYFAKVSRNGVPLFGTIGVLIGLAIGVILSYIAPKN-LFVYV 370 Query: 361 YSASILPGMVPWFALAVSQFRFRAKWRSEMGAHPFKSLFFPVSNYIMVIFLSLVLVGMWF 420 YSAS+LPGM+PWF + +SQ RFR +EM HPFK F PV+NY+ + FL +VL+GMWF Sbjct: 371 YSASVLPGMIPWFVILISQIRFRKAKGAEMDNHPFKMPFAPVTNYVTIAFLIMVLIGMWF 430 Query: 421 NPDTRTSLIVGAVFILVVIAGYYVFGIGK 449 N DTR SLIVG +F+ +V+ +Y FGIGK Sbjct: 431 NEDTRISLIVGVIFLAIVVISFYAFGIGK 459 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,539,406,064 Number of extensions: 103259637 Number of successful extensions: 420870 Number of sequences better than 1.0e-05: 6232 Number of HSP's gapped: 406386 Number of HSP's successfully gapped: 6399 Length of query: 453 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 314 Effective length of database: 1,751,175,118 Effective search space: 549868987052 Effective search space used: 549868987052 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)