BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0005.p (520 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIZ8.1 B1DIZ8_9BACL Extracellular solute-binding protein family 5 738 0.0 C0Z5Q9.1 C0Z5Q9_BREBN Oligopeptide ABC transporter substrate bin... 649 0.0 A9U7R5.1 A9U7R5_PHYPA Predicted protein (Fragment) 419 e-115 C4CP17.1 C4CP17_9CHLR ABC-type dipeptide transport system, perip... 283 3e-74 A7Z3C6.1 A7Z3C6_BACA2 AppA 270 2e-70 >B1DIZ8.1 B1DIZ8_9BACL Extracellular solute-binding protein family 5 Length = 580 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/518 (66%), Positives = 419/518 (80%) Query: 3 GGTLVMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREGNVKAEPWSLAADVPEIS 62 GGTL +S+FSDIV++NP+ +NDT+SGD+ +F++LY+LDR+GN+ +PWSLAA++P+IS Sbjct: 63 GGTLTVSTFSDIVSVNPIFVNDTASGDMQYLLFAQLYDLDRDGNLVVQPWSLAAELPQIS 122 Query: 63 ADGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMAKNPETGSPLTSLXXXXXXXXXXXXXX 122 DG TYTVK+K+ KWSDGQP+TADD+VFT++ NP+ G+P S Sbjct: 123 EDGKTYTVKMKNTAKWSDGQPITADDLVFTINTIINPKAGAPGISTFDKVGSVEKVDDNT 182 Query: 123 XXXXMKQVYAPFLYSLVQAIVPAHVLKDVKPKEMQTNPYGTDPAKTVTNGPWKWTSWKQG 182 +KQVYAPF YSL+ VP+H+LKDVKP+++Q NPYG DPAKTVT+GPWKW+ WK G Sbjct: 183 VKITLKQVYAPFQYSLMLNPVPSHILKDVKPEDLQANPYGKDPAKTVTSGPWKWSEWKAG 242 Query: 183 DSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLKGDTDQISAIPVTQVEAVSANK 242 +L+ADPNYWGEVKP+I ++VYKIYADQNTEVQAL+KGD D AIP+TQ+EAV N Sbjct: 243 QYVSLEADPNYWGEVKPNIQKVVYKIYADQNTEVQALIKGDVDTTLAIPITQLEAVEKND 302 Query: 243 DIHIIQKPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNILKGVGAL 302 I++I+ + YEYV FNFD+ NF DK+ F+ QK+RQAIA+ALNRQGMVDN+LKG GAL Sbjct: 303 KINVIKGSTSTYEYVSFNFDANNFPDKFIPFSSQKSRQAIAYALNRQGMVDNVLKGTGAL 362 Query: 303 MNAPFLPDTWADPGDAAVNYDYNAETAKKLLAEDGWVAGKDGILTKDGHRFSFELQYNAG 362 MNAPFLP +W+DPGD AVNY+Y+AE AK LLAEDGWVAGKDGIL KDGHRFSFELQYNAG Sbjct: 363 MNAPFLPGSWSDPGDKAVNYNYDAEKAKALLAEDGWVAGKDGILAKDGHRFSFELQYNAG 422 Query: 363 NSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPGKFQALLLAWSLNTPDPDSES 422 NSRRE VA +IQQNLK+VGIEV P AIDFA WIDQN+TPGK+ A+LL WSL+ PDPD ES Sbjct: 423 NSRREAVAQIIQQNLKDVGIEVKPTAIDFATWIDQNITPGKYPAILLGWSLSNPDPDGES 482 Query: 423 VFSSKYFPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIYKEVGKEISTDLPYVFLYQ 482 +FSSKYFPPAGQNSGWYKNEKLD+LWVDGYS VDQA RKEIY ++ EISTDLPYVFLYQ Sbjct: 483 IFSSKYFPPAGQNSGWYKNEKLDKLWVDGYSVVDQAARKEIYNQIATEISTDLPYVFLYQ 542 Query: 483 YGQAIGTGPRVHWAEEDAPEPSLGYGQYFHAIKWWVTD 520 YG G GP+V + EEDAP P+ G ++H IKWW+ + Sbjct: 543 YGNPQGIGPKVKFGEEDAPVPTQQTGYFYHMIKWWLAE 580 >C0Z5Q9.1 C0Z5Q9_BREBN Oligopeptide ABC transporter substrate binding protein Length = 561 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/520 (59%), Positives = 382/520 (73%), Gaps = 1/520 (0%) Query: 1 VDGGTLVMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREGNVKAEPWSLAADVPE 60 +DGGT S+ SDIV +NP+ NDT+SGD+ E+ + LYN + ++ PWSLAA++P+ Sbjct: 40 IDGGTFTHSTTSDIVTLNPIFGNDTASGDVMEYTQAYLYNRNPSFDLAVYPWSLAAELPK 99 Query: 61 ISADGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMAKNPETGSPLTSLXXXXXXXXXXXX 120 IS DGLTYT+K+K+ KWSDG P+TADD++FT++ K PETGSP + Sbjct: 100 ISEDGLTYTIKMKNNAKWSDGTPITADDLIFTINAIKTPETGSPEITKYDKVKEMKKLDD 159 Query: 121 XXXXXXMKQVYAPFLYSLVQAIVPAHVLKDVKPKEMQTNPYGTDPAKTVTNGPWKWTSWK 180 +KQ+YAPF + L+Q + PAHVLKDV K++Q + YG DPAKT T+GP+KWT WK Sbjct: 160 YTVEIKLKQLYAPFAFGLMQKLAPAHVLKDVPFKDLQAHSYGKDPAKTPTSGPYKWTEWK 219 Query: 181 QGDSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLKGDTDQISAIPVTQVEAVSA 240 Q + H LDA+PNYWGE KPHI ++VYKIYADQNT+VQAL+KGD D + +IPVTQ+EAV A Sbjct: 220 QKEFHVLDANPNYWGEKKPHIQKVVYKIYADQNTQVQALMKGDVDLVDSIPVTQLEAVKA 279 Query: 241 NKDIHIIQKPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNILKGVG 300 I+I +PG YEY FNFD KNF + YGLF GQKTRQAIAHA+NRQG++DNILKG G Sbjct: 280 KGTINISTEPGPSYEYFAFNFDKKNFPNNYGLFEGQKTRQAIAHAINRQGIIDNILKGTG 339 Query: 301 ALMNAPFLPDTWADPGDAAVNYDYNAETAKKLLAEDGWVAGKDGILTKDGHRFSFELQYN 360 +M+APFLP TWADPGDAAV+Y+Y+AE AK+LL EDGWVAG DGIL KDG+RFSFE +N Sbjct: 340 KIMDAPFLPGTWADPGDAAVHYEYSAEKAKQLLKEDGWVAGADGILAKDGNRFSFEFIFN 399 Query: 361 AGNSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPGKFQALLLAWSLNTPDPDS 420 +GNSRREQ A VIQQNLKE+GIE PKA+DF+A +DQ PGKFQ LLL W L+ PDPD Sbjct: 400 SGNSRREQAAVVIQQNLKEIGIEAKPKALDFSALVDQYANPGKFQVLLLGWQLSDPDPDG 459 Query: 421 ESVFSSKYFPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIYKEVGKEISTDLPYVFL 480 S F K FPP G N+GWY N KLD LW STV Q +R IYKEVGKEIST+LPYVF+ Sbjct: 460 ISTFGKKAFPP-GNNAGWYDNPKLDALWEKAVSTVKQEERAAIYKEVGKEISTNLPYVFM 518 Query: 481 YQYGQAIGTGPRVHWAEEDAPEPSLGYGQYFHAIKWWVTD 520 YQYG G RV + +E P + YG+ F + WW+ D Sbjct: 519 YQYGTPRGMTSRVKYKDEFKPVSMIPYGETFGFLNWWIDD 558 >A9U7R5.1 A9U7R5_PHYPA Predicted protein (Fragment) Length = 274 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/271 (73%), Positives = 229/271 (84%), Gaps = 1/271 (0%) Query: 249 KPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNILKGVGALMNAPFL 308 +PG QYEY+ FNF+ NFKDK+ +AGQKTRQAIA+ALNRQGM+DN+LKG G LMNAPFL Sbjct: 1 EPGPQYEYLGFNFNPDNFKDKFVPWAGQKTRQAIAYALNRQGMIDNVLKGTGKLMNAPFL 60 Query: 309 PDTWADPGDAAVNYDYNAETAKKLLAEDGWVAGKDGILTKDGHRFSFELQYNAGNSRREQ 368 P +WADPGDAAVNY ++ E AK+LLAEDGW G DGILTKDGHRFSFELQYN+GNSRREQ Sbjct: 61 PGSWADPGDAAVNYAFDPEKAKQLLAEDGWTPGSDGILTKDGHRFSFELQYNSGNSRREQ 120 Query: 369 VAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPGKFQALLLAWSLNTPDPDSESVFSSKY 428 V+ VIQQNLK+VGIEV PKAIDFAAW+DQN+TPGK+ A+L+ WSLN PDPD E+ FSSKY Sbjct: 121 VSNVIQQNLKDVGIEVVPKAIDFAAWVDQNLTPGKYPAILMGWSLNNPDPDGETTFSSKY 180 Query: 429 FPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIYKEVGKEISTDLPYVFLYQYGQAIG 488 FPPAGQN G+YKNEKLD+LW +G + VDQ KRKEIYKEVGKEISTDLPYVF+YQYG Sbjct: 181 FPPAGQNQGFYKNEKLDKLWEEGTAVVDQEKRKEIYKEVGKEISTDLPYVFMYQYGTPTA 240 Query: 489 -TGPRVHWAEEDAPEPSLGYGQYFHAIKWWV 518 +V +A+EDAPE SL YG +FH WWV Sbjct: 241 YNSKKVKFADEDAPESSLAYGYFFHLNNWWV 271 >C4CP17.1 C4CP17_9CHLR ABC-type dipeptide transport system, periplasmic component Length = 604 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 177/521 (33%), Positives = 281/521 (53%), Gaps = 23/521 (4%) Query: 3 GGTLVMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREGNVKAEPWSLAADVPEIS 62 GG ++ +F+D +NP++++DTSSG IA+ +F+ + D E EP A+ EIS Sbjct: 100 GGQIIEGTFADAKTVNPVLVSDTSSGRIADLIFNGVMTPDVE---TTEPKGELAESWEIS 156 Query: 63 ADGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMAKNPETGSPLTS-LXXXXXXXXXXXXX 121 DGLTYT L+ G+ + DG+P+TA+DV FT D+ NP + SP T+ L Sbjct: 157 DDGLTYTFTLRSGVTFHDGEPLTAEDVKFTYDLLMNPASNSPRTAELTERIESIEVTDES 216 Query: 122 XXXXXMKQVYAPFLYS-LVQAIVPAHVLKDVKPKEMQTNPYGT-DPAKTVTNGPWKWTSW 179 +K APFL S +V IVP H+L+DV P ++ + + T+ +GP+++ W Sbjct: 217 TVVFTLKNPTAPFLVSNMVYGIVPQHILQDVDPAQLAQHEFSVGTKGVTIGSGPFQFEEW 276 Query: 180 KQGDSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLKGDTDQISAIPVTQVEAVS 239 + D TL P YW E +P+I + +YK+ DQ VQ L G+ D I E + Sbjct: 277 VKDDHLTLVKYPGYW-EGEPNIDRYIYKVVPDQTVAVQQLKTGEID-FGPINEASYEEMK 334 Query: 240 ANKDIHIIQKPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNILKGV 299 A +++ + + + + + D +K LF ++ RQA+ +AL+R+ M++ I G+ Sbjct: 335 AQENVKVFEYDTFSFTFYAYQLDP----EKTTLFQDKRVRQALFYALDREAMIEAIRFGL 390 Query: 300 GALMNAPFLPDTWA-DPGDAAVNYDYNAETAKKLLAEDGWVAGKDGILTKDGHRFSFELQ 358 G + + +WA +P + Y+Y+ E AK+LL E GWV G DGI KDG R +F + Sbjct: 391 GEVAHGTMPLISWAYNPDGLEIKYEYDPEKAKQLLDEAGWVPGPDGIREKDGQRLAFSVY 450 Query: 359 YNAGNSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPGKFQALLLAWSLNTPDP 418 NAGN REQ V QQ KE+G+E TPK ++ A++D+ F+ L+ + + DP Sbjct: 451 TNAGNQVREQYITVFQQAWKEIGVECTPKTEEWNAFLDRITGSKDFEMFLVGFQWDV-DP 509 Query: 419 DSESVFSSKYFPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIYKEVGKEISTDLPYV 478 D ++++++ + G N Y N ++D+L G T DQ +RK IY E+ + +LP Sbjct: 510 DQTTMWATEAY-EGGFNMNKYSNPQVDELLKQGLLTTDQEERKRIYTEMQNILQDELPSA 568 Query: 479 FLYQYGQAI-GTGPRVHWAEEDAPEPSLGYGQYFHAIKWWV 518 L + +AI G RVH +A + + F+A +WWV Sbjct: 569 VL-DFPKAIAGVNKRVHNLWPNAVDTT------FNAHQWWV 602 >A7Z3C6.1 A7Z3C6_BACA2 AppA Length = 542 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 179/486 (36%), Positives = 258/486 (53%), Gaps = 23/486 (4%) Query: 3 GGTLVMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREGNVKAEPWSLAADVPEIS 62 GG LV+ S + NPL D +S DI ++S L D + NVK SLA V E Sbjct: 43 GGDLVVGSTGEPTLFNPLYSTDVASSDIEGMLYSTLLETDEKLNVKP---SLAEKVTEAD 99 Query: 63 ADGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMAKNPETGSPLTSLXXXXXXXXXXXXXX 122 GLTY VKLK G+K+ DG+ +TADDVVFT + N + S Sbjct: 100 G-GLTYDVKLKKGVKFHDGKELTADDVVFTYSIPLNKDYNGERGSGFESLKSVTKKGKYE 158 Query: 123 XXXXMKQVYAPFLYSLV---QAIVPAHVLKDVKPKEMQTNPYGTDPAKTVTNGPWKWTSW 179 MK+ A + Y++V I+P H+L V ++ N + + + +GP+K+ W Sbjct: 159 IQFKMKKKDA-YFYNVVLDSYGILPKHILGKVPVADLGENEF--NRKNPIGSGPFKFVEW 215 Query: 180 KQGDSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLKGDTDQISAIPVTQVEAVS 239 K+G+ L+A+ +Y+G +P++ + K D N V L GD D +P T + V Sbjct: 216 KKGEYVKLEANDDYFGG-RPYLDSVTVKTIPDSNAAVAQLKAGDID-FFVVPGTDFDTVK 273 Query: 240 ANKDIHIIQKPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNILKGV 299 ++ + G Y Y+ +N + FKDK K RQA+ +AL+RQ MVD +L G Sbjct: 274 TFGNVKVKSDLGLNYSYIGWNEKKEIFKDK-------KVRQALTYALDRQAMVDQVLNGD 326 Query: 300 GALMNAPFLPDTWADPGDAAVNYDYNAETAKKLLAEDGWV-AGKDGILTKDGHRFSFELQ 358 G + + P P +W P +DYN + AK+LL E GW DG L KDG +FSFE++ Sbjct: 327 GKVADVPESPLSWNYPKSKVPTFDYNPKKAKQLLKEAGWEDHDGDGYLDKDGKKFSFEIK 386 Query: 359 YNAGNSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPG-KFQALLLAWSLNTPD 417 N GN RE +A V+QQ LKEVGIE P+ ++F+A I+Q P + ALLL WSL T Sbjct: 387 TNQGNKIREDLAVVVQQQLKEVGIEAKPRIVEFSALIEQTSAPNWDYDALLLGWSLATF- 445 Query: 418 PDSESVFSSKYFPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIYKEVGKEISTDLPY 477 PD S+F S G N+ WYKN K+D+L + + D+ + ++ Y+E+ K I+ D PY Sbjct: 446 PDQFSIFHSSQ-SKNGLNNIWYKNPKVDKLLEEAKTITDRKEYQKKYEEIYKLIAEDQPY 504 Query: 478 VFLYQY 483 FL+ Y Sbjct: 505 SFLFYY 510 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,380,048,609 Number of extensions: 147531543 Number of successful extensions: 292515 Number of sequences better than 1.0e-05: 5890 Number of HSP's gapped: 283107 Number of HSP's successfully gapped: 6272 Length of query: 520 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 380 Effective length of database: 1,741,754,103 Effective search space: 661866559140 Effective search space used: 661866559140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)