BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0001.p (339 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIZ4.1 B1DIZ4_9BACL Oligopeptide/dipeptide ABC transporter, AT... 520 e-146 C0Z5Q5.1 C0Z5Q5_BREBN Oligopeptide ABC transporter ATP binding p... 505 e-141 A4J7A7.1 A4J7A7_DESRM Oligopeptide/dipeptide ABC transporter, AT... 415 e-114 C0FIP5.1 C0FIP5_9CLOT Putative uncharacterized protein 414 e-114 Q67KJ0.1 Q67KJ0_SYMTH Oligopeptide ABC transporter ATP-binding p... 412 e-113 >B1DIZ4.1 B1DIZ4_9BACL Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 340 Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust. Identities = 251/314 (79%), Positives = 278/314 (88%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 + ++KYFPI GLLNR VGQVKAVD V+LSIR+GETFGLVGESGCGKST GRV+L L A Sbjct: 21 RGVKKYFPIRSGLLNRVVGQVKAVDDVTLSIRKGETFGLVGESGCGKSTLGRVVLNLHKA 80 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 T GEV F G D+ L ELR+LR++MQIIFQDPFGSLNPRFLVKDIIGEPL++H M+ Sbjct: 81 TEGEVNFNGTDVQKLAGSELRRLRKQMQIIFQDPFGSLNPRFLVKDIIGEPLRLHERMTV 140 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 +EID RVVELMELVGLDATRRNRYP+EFSGGQRQRIGIARAIALNP+FIVADEAVSALDV Sbjct: 141 REIDKRVVELMELVGLDATRRNRYPNEFSGGQRQRIGIARAIALNPEFIVADEAVSALDV 200 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 SVQSQVINLLMKLQ+ELGLTFLFIAHGLNVVRHISDRVGVMYLGK+VE+A TE LFA PL Sbjct: 201 SVQSQVINLLMKLQRELGLTFLFIAHGLNVVRHISDRVGVMYLGKIVEIAPTEELFAKPL 260 Query: 263 HPYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLE 322 HPYTAALLSAIP+P P RK +RIVLQGDVPSPANPPSGCRFH RCP A+ +C EPLL+ Sbjct: 261 HPYTAALLSAIPRPDPTRKRERIVLQGDVPSPANPPSGCRFHPRCPAAKARCSVDEPLLK 320 Query: 323 ELQPGRRVACHFPL 336 E + GR++ACHFPL Sbjct: 321 EREDGRQIACHFPL 334 >C0Z5Q5.1 C0Z5Q5_BREBN Oligopeptide ABC transporter ATP binding protein Length = 324 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/313 (77%), Positives = 273/313 (87%) Query: 25 IRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSATG 84 I+KYFPI GLL+R +G VKAVD VS IR GETFGLVGESGCGKST GRV+L LQ AT Sbjct: 12 IKKYFPIKAGLLSRVIGHVKAVDDVSFGIRAGETFGLVGESGCGKSTLGRVVLNLQRATS 71 Query: 85 GEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSAKE 144 GEVLF G +IH + QE KLR +MQIIFQDPFGSLNPRFLV DIIGEPL++H SAKE Sbjct: 72 GEVLFDGTNIHQVNRQENLKLRRDMQIIFQDPFGSLNPRFLVSDIIGEPLRVHLRASAKE 131 Query: 145 IDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDVSV 204 +D RVVELM LVGLD +RRNRYPHEFSGGQRQRIGIAR+IAL+P+FIVADEAVSALDVSV Sbjct: 132 MDERVVELMSLVGLDPSRRNRYPHEFSGGQRQRIGIARSIALSPRFIVADEAVSALDVSV 191 Query: 205 QSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPLHP 264 QSQV+NL+MKLQKE+GLT+LFIAHGLNVVRHISDRVGVMYLGK+VE+A T+ LFA PLHP Sbjct: 192 QSQVLNLMMKLQKEMGLTYLFIAHGLNVVRHISDRVGVMYLGKMVEIARTDDLFAQPLHP 251 Query: 265 YTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLEEL 324 YTAALLSAIPKPTP R+ +RIVLQGDVPSPANPPSGCRFH RCP+AQE+C ++ P L E+ Sbjct: 252 YTAALLSAIPKPTPHRRQERIVLQGDVPSPANPPSGCRFHPRCPMAQERCSKEIPELIEV 311 Query: 325 QPGRRVACHFPLA 337 R+VACHFPLA Sbjct: 312 GQDRQVACHFPLA 324 >A4J7A7.1 A4J7A7_DESRM Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 325 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 191/311 (61%), Positives = 239/311 (76%) Query: 24 DIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSAT 83 ++ KYFPI G+ + GQVKAVDG+S IR+GET GLVGESGCGKST GRV+LRL T Sbjct: 10 NLTKYFPIKVGMFGKEAGQVKAVDGLSFDIRKGETLGLVGESGCGKSTTGRVILRLLEPT 69 Query: 84 GGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSAK 143 G V F G+D+ + E+R LR++MQIIFQDP+ SLNPR V DII EP+K++ S Sbjct: 70 AGRVEFTGKDVFAASPAEMRALRKDMQIIFQDPYASLNPRMSVGDIIAEPIKLYNLASGP 129 Query: 144 EIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDVS 203 E+ +V L+ VGL + RYPHEFSGGQRQR+GIARA+ALNP+ I+ DE VSALDVS Sbjct: 130 EVQKKVDYLLSCVGLASYHARRYPHEFSGGQRQRVGIARALALNPKLIICDEPVSALDVS 189 Query: 204 VQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPLH 263 +QSQV+NLL LQ+E GLT+LFIAHGLNVV+H+SDR+GVMYLGK+VE+A+ + L+ PLH Sbjct: 190 IQSQVLNLLKDLQQEFGLTYLFIAHGLNVVKHVSDRIGVMYLGKMVELAKDDELYYNPLH 249 Query: 264 PYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLEE 323 PYT ALLSA+P P PR K +RI+L GDVPSP NPP GCRFHTRC + ++ C+Q EP+ + Sbjct: 250 PYTRALLSAVPIPDPRAKKERIILTGDVPSPVNPPKGCRFHTRCFMCEDICKQHEPVFKR 309 Query: 324 LQPGRRVACHF 334 ++PG VACH Sbjct: 310 IKPGHWVACHM 320 >C0FIP5.1 C0FIP5_9CLOT Putative uncharacterized protein Length = 331 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/311 (62%), Positives = 244/311 (78%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 ++++KYFPIT+GL TVG VKAVDG++L I+RGET GLVGESGCGKST GR +LRL Sbjct: 11 RNLKKYFPITRGLFKHTVGYVKAVDGINLKIKRGETLGLVGESGCGKSTLGRSILRLTEP 70 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 + GE+L G DI L +ELR+ R+++QIIFQDPF SLNPR V DI+GEPLKIH + Sbjct: 71 SDGEILLDGTDIRKLNQEELRQYRKKLQIIFQDPFASLNPRMTVGDIVGEPLKIHGLVKK 130 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 E++ RV EL+ LVGLD+ RYPH+FSGGQRQRIGIARA++LNP+ ++ DE VSALDV Sbjct: 131 DEMEERVAELLTLVGLDSRIMGRYPHQFSGGQRQRIGIARALSLNPELVICDEPVSALDV 190 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 SV+SQV+NL+ +L+++L LTFLFI+H L+VV+HISDRV VMYLG+LVE+A+ E ++ P Sbjct: 191 SVRSQVLNLMNELKEKLNLTFLFISHDLSVVKHISDRVAVMYLGQLVELADKEEIYENPA 250 Query: 263 HPYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLE 322 HPYT AL+SAIP P P + RI+L GDVPSP NPPSGCRFH RCPLA + CR+QEP L Sbjct: 251 HPYTKALMSAIPIPDPFVERKRIILAGDVPSPLNPPSGCRFHPRCPLACQVCREQEPKLR 310 Query: 323 ELQPGRRVACH 333 E + G ACH Sbjct: 311 EYKKGHYAACH 321 >Q67KJ0.1 Q67KJ0_SYMTH Oligopeptide ABC transporter ATP-binding protein Length = 338 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/316 (63%), Positives = 243/316 (76%), Gaps = 4/316 (1%) Query: 23 KDIRKYFPITKG-LLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQS 81 ++++K+FP+T G ++ RTVG KAVDGVS IRRGET GLVGESGCGK+T G+VLLRLQ Sbjct: 20 RNLKKHFPVTGGGIIARTVGYAKAVDGVSFQIRRGETLGLVGESGCGKTTMGKVLLRLQE 79 Query: 82 ATGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMS 141 T G+V F GR+I+ L +E+RKLR EMQIIFQDP+ SLNPR V DIIGEPL+IH Sbjct: 80 PTEGQVYFEGRNIYELNREEMRKLRREMQIIFQDPYSSLNPRMTVGDIIGEPLEIHGVAR 139 Query: 142 AKEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALD 201 RV EL+++VGL + RYPHEFSGGQRQRIGIARA+ALNP+ IV DE VSALD Sbjct: 140 GAAKTKRVHELLDVVGLASFHARRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALD 199 Query: 202 VSVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAP 261 VS+QSQV+NLL LQKE GLT+LFIAHGL VV+H+SDRVGVMYLGK++E++ L+ P Sbjct: 200 VSIQSQVLNLLEDLQKEFGLTYLFIAHGLAVVKHVSDRVGVMYLGKMMEISPANELYTNP 259 Query: 262 LHPYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRC---PLAQEKCRQQE 318 LHPYT AL+SAIP P P K +RIVL+GDVPSP NPPSGCRFHTRC P + C+++E Sbjct: 260 LHPYTEALMSAIPIPDPTLKRERIVLEGDVPSPVNPPSGCRFHTRCRYQPQVGDICKEEE 319 Query: 319 PLLEELQPGRRVACHF 334 P L ++ VACH Sbjct: 320 PPLVDVGNDHWVACHM 335 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,864,524,159 Number of extensions: 77946029 Number of successful extensions: 481670 Number of sequences better than 1.0e-05: 85578 Number of HSP's gapped: 381461 Number of HSP's successfully gapped: 90697 Length of query: 339 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 203 Effective length of database: 1,779,438,163 Effective search space: 361225947089 Effective search space used: 361225947089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)