BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0038.p (439 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WBZ2.1 Q5WBZ2_BACSK Sugar ABC transporter substrate-binding pr... 330 2e-88 B3K3I9.1 B3K3I9_9BACI Extracellular solute-binding protein family 1 327 1e-87 A8ZRN6.1 A8ZRN6_DEIGD ABC transporter, substrate binding peripla... 279 3e-73 C1XVP2.1 C1XVP2_9DEIN Carbohydrate ABC transporter substrate-bin... 278 9e-73 A4BAU4.1 A4BAU4_9GAMM ABC transporter, substrate binding protein... 236 3e-60 >Q5WBZ2.1 Q5WBZ2_BACSK Sugar ABC transporter substrate-binding protein Length = 421 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 167/438 (38%), Positives = 252/438 (57%), Gaps = 19/438 (4%) Query: 3 MRTWLLGLIFAVLLAGGCSTGAGNGTHGPEXXXXXXXXXXXXXQEPVKLKFSIWGNDAQK 62 M+ W + +++AG S+G +G E ++L FS WGN+ Sbjct: 1 MKRWSISAGLLLVVAGCSSSGGSTDANG---------------DEQIELTFSTWGNENHI 45 Query: 63 AMYESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAPDAGWLAERMIPQLLESG 122 A+YE L+ + HP V I T PF DYQQ ++++ A + PD GW AERM+PQ +E+ Sbjct: 46 AVYEELLEAYYVDHPNVHVTIQTTPFPDYQQNMTVLAAGQELPDIGWAAERMVPQFIENN 105 Query: 123 QLVDIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTPPVLIYYNKDLFRSKGLKT 182 L D++A +++D +++ DI P T+ + G +LYG+PFS+PP +I+YNK LF GL+T Sbjct: 106 ILADLSA-LREDESFHFEDILPGTITQYEVGDALYGVPFSSPPHIIFYNKTLFEKNGLET 164 Query: 183 PTELYKEGHWNYDEFLKAARSITNPQQGIYGVKLVRDWNNWSDALLPLFWSHGAELFDSD 242 P EL G W ++ F +AA I ++G+YG R W W + LL + G +LF+ D Sbjct: 165 PQELESRGEWTWEAFEEAAAVIAE-EEGVYGANFFRAWETWEN-LLAHTRAEGGDLFNED 222 Query: 243 GSAFALNSPEGREALQLYSDLMFKDKVHPLPGDELSFDSGQIGMYTDRYSYTSKARAVTD 302 + F NS G L++ +MF+D+ HP GD+++F++G +GM+ D YSY S AR + D Sbjct: 223 TTEFTWNSDAGISTLEMLERMMFEDRSHPRAGDQVAFEAGNVGMFFDVYSYVSTAREIED 282 Query: 303 FEWDIAPMPAGIKGTGTSLGYAGVSVFE-TRHPAEAAEFLKFITSAESMSVTAQYFVPSR 361 FEWDIAP+P G +G LG AG +FE T HP EA + +++ S M T+ YF P R Sbjct: 283 FEWDIAPVPLGSQGRSPILGQAGYVMFEGTEHPEEALDLIRYFASQTGMEATSTYFAPPR 342 Query: 362 KSVLESDVFLRAAAKPSPESIQLAVLDQMADARIAPGHKNWQQIDTKIQMLLDELYTQSA 421 SVLESD F+ P S++ +L+ ++R+ P H WQ ID I D L+ Q+A Sbjct: 343 ASVLESDAFIEQPGNPPRASMESTILNLSEESRVLPIHPEWQNIDNHILQGFDHLFGQTA 402 Query: 422 TANEVLGKMEVEVNRLMK 439 ++L +ME +N L++ Sbjct: 403 EPADILEQMEASINPLVQ 420 >B3K3I9.1 B3K3I9_9BACI Extracellular solute-binding protein family 1 Length = 430 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 166/395 (42%), Positives = 244/395 (61%), Gaps = 5/395 (1%) Query: 47 EPVKLKFSIWGNDAQKAMYESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAPD 106 E V LKF+ WGN AQ +Y+ L F Q HP EV+I TIPFADYQQK+S++ A + PD Sbjct: 36 EKVLLKFATWGNPAQLELYKGLTDAFTQEHPNIEVQIDTIPFADYQQKMSVLAAGQELPD 95 Query: 107 AGWLAERMIPQLLESGQLVDIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTPPV 166 W++ERM+PQ + + L D+ ++ D ++ DI PSTL++F + LYG+PFSTPP Sbjct: 96 IAWVSERMVPQFMANDILADV-TDIVQDDAFDIDDIIPSTLELFRQDDKLYGLPFSTPPS 154 Query: 167 LIYYNKDLFRSKGLKTPTELYKEGHWNYDEFLKAARSI--TNPQQGIYGVKLVRDWNNWS 224 +++YN+DLF+ GL TP EL ++G W ++ F +AA++I + +YG RDW W Sbjct: 155 VVFYNEDLFKQAGLSTPNELAEKGEWTWETFEEAAKTIKTSAASPNVYGANFFRDWKTWI 214 Query: 225 DALLPLFWSHGAELFDSDGSAFALNSPEGREALQLYSDLMFKDKVHPLPGDELSFDSGQI 284 L WS+G+ F+ + + + N G E L + +MF + HP G++++F+SGQI Sbjct: 215 -ILASYSWSNGSGPFNPEMTEYTWNDQYGVETLDMLKRMMFTEGSHPKAGEQVNFESGQI 273 Query: 285 GMYTDRYSYTSKARAVTDFEWDIAPMPAGIKGTGTSLGYAGVSVF-ETRHPAEAAEFLKF 343 GM D YS+ SKAR + +F+W IAPMP+G KG+ +G AG +F E +HP EA E LKF Sbjct: 274 GMIFDNYSFVSKAREIQNFKWSIAPMPSGSKGSVPMMGQAGYVLFKEGKHPEEAKELLKF 333 Query: 344 ITSAESMSVTAQYFVPSRKSVLESDVFLRAAAKPSPESIQLAVLDQMADARIAPGHKNWQ 403 + E + T+ +FVP R+SVL SD FL P I+ AV+D+M A + PGH WQ Sbjct: 334 LAGKEGVQKTSAFFVPPRQSVLNSDEFLSVEGNPDAGHIKQAVIDEMPKAVVQPGHIRWQ 393 Query: 404 QIDTKIQMLLDELYTQSATANEVLGKMEVEVNRLM 438 IDT+I DEL+ ++ +++ +V+ L+ Sbjct: 394 NIDTEILTGFDELFAGRGEPQKIQDEVKSKVDALL 428 >A8ZRN6.1 A8ZRN6_DEIGD ABC transporter, substrate binding periplasmic component Length = 408 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 228/393 (58%), Gaps = 7/393 (1%) Query: 47 EPVKLKFSIWGNDAQKAMYESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAPD 106 E L+FS W A+ + L ++ GT V++ PFADY +KLS+ +AS APD Sbjct: 21 EAADLRFSTWAGGEGLALLQQLAKEYTA-KTGTNVKVEVTPFADYSRKLSVQIASGDAPD 79 Query: 107 AGWLAERMIPQLLESGQLVDIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTPPV 166 GW+AER +P L S L +++A KD +N D S+L ++ +GG+LYGIPFS P+ Sbjct: 80 IGWVAERDVPTFLASNNLANLSALSKD-ASFNLNDFPTSSLALWKQGGNLYGIPFSNSPL 138 Query: 167 LIYYNKDLFRSKGLKTPTELYKEGHWNYDEFLKAARSITNPQQGIYGVKLVR-DWNNWSD 225 +++YNKDLF+ G+ P Y +G W+Y++F K+A +I + G YG +++R D W+ Sbjct: 139 VLFYNKDLFKQAGVADPMTQYAKGQWSYNDFQKSALAIKQ-KTGSYGARVMRLDPKAWAG 197 Query: 226 ALLPLFWSHGAELFDSDGSAFALNSPEGREALQLYSDLMFKDKVHPLPGDELSFDSGQIG 285 LL + WS G ++D + LN+P +A L ++MFKD+ P PGD+ SFD G++G Sbjct: 198 GLLAVLWSQGGGVYDKNMKC-NLNAPGSLQAFSLMQNMMFKDQSMPRPGDQTSFDGGRLG 256 Query: 286 MYTDRYSYTSKARAVTDFEWDIAPMPAGIKGTGTSLGYAGVSVF-ETRHPAEAAEFLKFI 344 MY D SY + + F+W IAP+P G G T LG AG +VF + R+ AEA FLKFI Sbjct: 257 MYFDNISYAGQLKDA-KFKWGIAPLPKGSAGRITQLGQAGYAVFSKGRNQAEAVNFLKFI 315 Query: 345 TSAESMSVTAQYFVPSRKSVLESDVFLRAAAKPSPESIQLAVLDQMADARIAPGHKNWQQ 404 S E+M+ TA++F P R+SVL S +L A +++ A++ Q+ AR+ +W + Sbjct: 316 ASKENMARTAKFFPPPRQSVLRSSAYLNANPAIPASALKTALISQLGSARVLQTDTHWLK 375 Query: 405 IDTKIQMLLDELYTQSATANEVLGKMEVEVNRL 437 + I LD+++ +L + V+ L Sbjct: 376 ANDAITGSLDQVFQPGTNTKAILDRTCQTVDGL 408 >C1XVP2.1 C1XVP2_9DEIN Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 411 Score = 278 bits (710), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 149/394 (37%), Positives = 226/394 (57%), Gaps = 5/394 (1%) Query: 46 QEPVKLKFSIWGNDAQKAMYESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAP 105 Q+ + L+FS W A+ + L ++ +P V + PFADY +K++I +AS AP Sbjct: 20 QQKISLRFSTWAGGDGLALLQQLAKEYSDSNPRVNVTVEVTPFADYPRKVAIQVASGDAP 79 Query: 106 DAGWLAERMIPQLLESGQLVDIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTPP 165 D GWLAER +P L S LVD+ A + D ++ D S L+++ +GG +YG+PFS P Sbjct: 80 DVGWLAERDVPAFLASNALVDLRASLYADRNFDAADFPTSALNLWRKGGGIYGVPFSNSP 139 Query: 166 VLIYYNKDLFRSKGLKTPTELYKEGHWNYDEFLKAARSITNPQQGIYGVKLVR-DWNNWS 224 +++YNKDLF G+ P Y G W+Y F KAA +I + +G +++R D WS Sbjct: 140 QVLFYNKDLFAKAGVADPMTQYSRGTWDYAAFQKAAEAIKEKTEA-FGARVMRLDPKAWS 198 Query: 225 DALLPLFWSHGAELFDSDGSAFALNSPEGREALQLYSDLMFKDKVHPLPGDELSFDSGQI 284 L + WS+G ++D D L+S A L D+MFK P PGD+ +F++G++ Sbjct: 199 SGTLAVLWSYGGGVYD-DKFKCILDSDGSVRAFTLMHDMMFKSGSMPRPGDQTTFETGRM 257 Query: 285 GMYTDRYSYTSKARAVTDFEWDIAPMPAGIKGTGTSLGYAGVSVF-ETRHPAEAAEFLKF 343 MY D SY+++ R V DF+W IAPMP G G T LG AG VF ++++P EA EFL F Sbjct: 258 AMYMDNVSYSAQLRTV-DFKWGIAPMPKGPNGRITQLGQAGYVVFAKSKYPKEAIEFLAF 316 Query: 344 ITSAESMSVTAQYFVPSRKSVLESDVFLRAAAKPSPESIQLAVLDQMADARIAPGHKNWQ 403 + S + M+ TA++F P RKSVL + +L + ES+++A+++Q++ AR+ NW Sbjct: 317 LASKDVMARTARFFPPPRKSVLANPAYLSSNPLIPAESLKVALVNQVSSARVFLAPTNWL 376 Query: 404 QIDTKIQMLLDELYTQSATANEVLGKMEVEVNRL 437 + + I LD LY A VL + +V+ L Sbjct: 377 RANDVITSGLDRLYQPGANLKAVLNDICRQVDAL 410 >A4BAU4.1 A4BAU4_9GAMM ABC transporter, substrate binding protein (Sugar) Length = 418 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 218/392 (55%), Gaps = 11/392 (2%) Query: 51 LKFSIW-GNDAQKAMYESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAPDAGW 109 L+F++W G++A +M F+ HP T + TIPFADY QK+S+ + PD GW Sbjct: 27 LRFTVWTGSEAHLSMLNEFADGFKATHPNTNITFETIPFADYVQKISLQIGGGNPPDMGW 86 Query: 110 LAERMIPQLLESGQLVDIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTPPVLIY 169 + E P ++S L D++ ++ YN+ D+ PS + ++ + ++YG+PFST P +I+ Sbjct: 87 MLEGTAPTFIQSNILADVSDTLQATANYNFEDLSPSAMGLWQKDDAVYGVPFSTSPFVIF 146 Query: 170 YNKDLFRSKGLKTPTELYKEGHWNYDEFLKAARSITNPQQGIYGVKLVR----DWNNWSD 225 YN+ L + GL P EL+ +G W + A ++ + +QGIYG + + D W + Sbjct: 147 YNQSLLDAAGLDNPNELHAKGEWTWGALRDMADTLADAEQGIYGFETMDGQGYDGRVW-E 205 Query: 226 ALLPLFWSHGAELFDSDGSAFALNSPEGREALQLYSDLMFKDKVHPLPGDELSFDSGQIG 285 L+PL S+G +++ D LNS EA+Q+Y D++FKD+ PG+ F +G+ Sbjct: 206 VLVPLVRSYGGDVWQGD--TCTLNSATAVEAVQVYHDMIFKDQSAVPPGEMGDFFNGKAA 263 Query: 286 MYTDRYSYTSKARAVTDFEWDIAPMPAGIKGTGTSLGYAGVSVF-ETRHPAEAAEFLKFI 344 + + S SK DF+W IAPMP+G G+ +G A V VF ++ + A A EFL ++ Sbjct: 264 LTYTQISRASKLDEA-DFDWGIAPMPSGKAGSAPIIGQAAVVVFKDSPNRALAEEFLAYM 322 Query: 345 TSAESMSVTAQYFVPSRKSVLESDVFLRAAAKPSPESIQLAVLDQMADARIAPGHKNWQQ 404 T+ ++ A++F P+R SVL SD FL + ++ +P ++++ V +++ + + P H N Sbjct: 323 TNEAGVARMAEFFPPARASVLGSDAFLNSNSRLTPSAMRI-VANEINNGSVMPSHVNMPV 381 Query: 405 IDTKIQMLLDELYTQSATANEVLGKMEVEVNR 436 I + + D+L+ A V + +N+ Sbjct: 382 IKSATRGTFDKLWKADADIEAVFTEACSRINK 413 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,663,750,830 Number of extensions: 111577520 Number of successful extensions: 273372 Number of sequences better than 1.0e-05: 1397 Number of HSP's gapped: 272802 Number of HSP's successfully gapped: 1403 Length of query: 439 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 300 Effective length of database: 1,751,175,118 Effective search space: 525352535400 Effective search space used: 525352535400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)