BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0341.0029.p
         (117 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0K7J8.1 B0K7J8_THEP3 Transcriptional regulator, AbrB family          119   6e-26
B0K127.1 B0K127_THEPX Transcriptional regulator, AbrB family          119   6e-26
Q0B0U8.1 Q0B0U8_SYNWW Transcriptional regulator, AbrB family          117   4e-25
Q8RDD4.1 Q8RDD4_THETN Transcription regulator AbrB                    117   4e-25
B8D2B9.1 B8D2B9_HALOH Transcriptional regulator, AbrB family          117   5e-25

>B0K7J8.1 B0K7J8_THEP3 Transcriptional regulator, AbrB family
          Length = 83

 Score =  119 bits (299), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 71/83 (85%)

Query: 33  VMKATGIVRKVDELGRIVIPIELRRTMGIDIKDPLEIFVDGEKIILRKYEPTCIFSGSAE 92
           ++K+TGIVRKVDELGR+VIPIELRRT+ I  +D LEI+VDGE+I+L+KYEP CIF G+AE
Sbjct: 1   MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAE 60

Query: 93  NLINFKGKMVSKDVLDELIASFD 115
           N+IN+KGK + K+ L+EL  S D
Sbjct: 61  NVINYKGKNICKNCLEELKKSVD 83


>B0K127.1 B0K127_THEPX Transcriptional regulator, AbrB family
          Length = 83

 Score =  119 bits (299), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 71/83 (85%)

Query: 33  VMKATGIVRKVDELGRIVIPIELRRTMGIDIKDPLEIFVDGEKIILRKYEPTCIFSGSAE 92
           ++K+TGIVRKVDELGR+VIPIELRRT+ I  +D LEI+VDGE+I+L+KYEP CIF G+AE
Sbjct: 1   MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAE 60

Query: 93  NLINFKGKMVSKDVLDELIASFD 115
           N+IN+KGK + K+ L+EL  S D
Sbjct: 61  NVINYKGKNICKNCLEELKKSVD 83


>Q0B0U8.1 Q0B0U8_SYNWW Transcriptional regulator, AbrB family
          Length = 83

 Score =  117 bits (293), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 67/78 (85%)

Query: 33  VMKATGIVRKVDELGRIVIPIELRRTMGIDIKDPLEIFVDGEKIILRKYEPTCIFSGSAE 92
           ++K+TG+VRKVDELGRIVIPIELRRTMGI+ KD LEI+VD EKIIL+KYEP CIF G+AE
Sbjct: 1   MLKSTGVVRKVDELGRIVIPIELRRTMGIEEKDALEIYVDSEKIILKKYEPACIFCGNAE 60

Query: 93  NLINFKGKMVSKDVLDEL 110
            ++N+KGK + K  L EL
Sbjct: 61  EVVNYKGKNLCKSCLTEL 78


>Q8RDD4.1 Q8RDD4_THETN Transcription regulator AbrB
          Length = 84

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 69/78 (88%)

Query: 33  VMKATGIVRKVDELGRIVIPIELRRTMGIDIKDPLEIFVDGEKIILRKYEPTCIFSGSAE 92
           ++K+TGIVRKVDELGR+VIPIELRRT+ I  +D LEI+VDGE+I+L+KYEP CIF G+AE
Sbjct: 1   MLKSTGIVRKVDELGRVVIPIELRRTLNIAERDALEIYVDGEQIVLKKYEPACIFCGNAE 60

Query: 93  NLINFKGKMVSKDVLDEL 110
           N+IN+KGK + K+ L+EL
Sbjct: 61  NVINYKGKNICKNCLEEL 78


>B8D2B9.1 B8D2B9_HALOH Transcriptional regulator, AbrB family
          Length = 80

 Score =  117 bits (292), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 68/77 (88%)

Query: 34  MKATGIVRKVDELGRIVIPIELRRTMGIDIKDPLEIFVDGEKIILRKYEPTCIFSGSAEN 93
           MK+TGIVRK+D+LGR+VIPIELRRTM ID KDP+EIFVD EKIIL+KYEP CIF G+A++
Sbjct: 1   MKSTGIVRKIDDLGRMVIPIELRRTMNIDKKDPMEIFVDDEKIILKKYEPACIFCGNADD 60

Query: 94  LINFKGKMVSKDVLDEL 110
            + FKGK++ K+ L+E+
Sbjct: 61  TVEFKGKVICKNCLNEM 77


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.146    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 674,561,186
Number of extensions: 25367975
Number of successful extensions: 67268
Number of sequences better than 1.0e-05: 604
Number of HSP's gapped: 67265
Number of HSP's successfully gapped: 606
Length of query: 117
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 33
Effective length of database: 2,269,330,943
Effective search space: 74887921119
Effective search space used: 74887921119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)