BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0024.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9K9.1 B1D9K9_9BACL Binding-protein-dependent transport system... 468 e-130 C4G4V0.1 C4G4V0_ABIDE Putative uncharacterized protein 239 3e-61 C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport system... 232 3e-59 B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport system... 230 1e-58 B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport system... 223 2e-56 >B1D9K9.1 B1D9K9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/296 (79%), Positives = 250/296 (84%) Query: 1 MLKTLGRRWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNF 60 M K +GR+ EK++FGLFTLPVLICIA+AFYIPF MTIRYS+TKWNGISKHPKF+GLDNF Sbjct: 1 MFKKMGRKVSEKIEFGLFTLPVLICIAIAFYIPFAMTIRYSLTKWNGISKHPKFIGLDNF 60 Query: 61 QQIFTGDSNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILS 120 +QIF D+NF SAWFTIK DMKLKST+WLRAAFFIPYILS Sbjct: 61 KQIFLHDTNFTQSAWFTIKYAVLYIVLVNVLAILLALVLDMKLKSTTWLRAAFFIPYILS 120 Query: 121 LVIVGFIWKFIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYI 180 LVIVGFIWKFIFMQGF SLG STGW F LSWLG PGLAFISIL VSIWQS+GFYLVIYI Sbjct: 121 LVIVGFIWKFIFMQGFESLGASTGWGIFKLSWLGEPGLAFISILLVSIWQSVGFYLVIYI 180 Query: 181 AGLQSVPDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXX 240 AGLQSVPDDLKEAATVDGAG +RRFF+ITLPLLAPSITISVFMALTNSIKVFDVILSL Sbjct: 181 AGLQSVPDDLKEAATVDGAGPIRRFFNITLPLLAPSITISVFMALTNSIKVFDVILSLTG 240 Query: 241 XXXXXXXYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVEA 296 YSIAYDIYRDTFQNNLYGYGTAKALILF+AVL+VTIIQLT+FKRREVEA Sbjct: 241 GGPGGTTYSIAYDIYRDTFQNNLYGYGTAKALILFVAVLIVTIIQLTIFKRREVEA 296 >C4G4V0.1 C4G4V0_ABIDE Putative uncharacterized protein Length = 292 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/291 (45%), Positives = 179/291 (61%) Query: 5 LGRRWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIF 64 + +R +E F +F P +I + A IPF+M + YS KWNGI K+ FVG DNF +IF Sbjct: 1 MNKRLKEFSVFAIFVFPAVIFVLFATDIPFLMNLYYSFFKWNGIGKNMTFVGFDNFVRIF 60 Query: 65 TGDSNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIV 124 T F A FT+K K K +S RA ++IPYI+SL + Sbjct: 61 TKGGLFWKGAMFTLKFSLFYVIIVNIISLTVALFLSKKSKISSAGRAFYYIPYIISLTAI 120 Query: 125 GFIWKFIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQ 184 IWKFIF GF +L TGW FF SW+GTP LAF ++ +++WQ+IGFY+ YIAG+ Sbjct: 121 SLIWKFIFGPGFEALYSMTGWEFFNWSWVGTPKLAFYVVVIMTVWQNIGFYMANYIAGII 180 Query: 185 SVPDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXX 244 SVP +L EAA +DGAG ++ FF ITLPL+ PSI+I + +LT S K+FDV++ Sbjct: 181 SVPTELSEAARIDGAGRVQSFFRITLPLIMPSISICLLTSLTFSFKLFDVVMVFTKGGPA 240 Query: 245 XXXYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVE 295 ++AYDIY++ F NN YG+ TAK+L+ + VL+VT IQL + KRREVE Sbjct: 241 NSTVTVAYDIYKEAFVNNNYGFATAKSLVFVVFVLLVTSIQLIITKRREVE 291 >C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 123/290 (42%), Positives = 169/290 (58%) Query: 7 RRWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTG 66 R W++ F F P + IPF I YS T WNG++ FVGLDN+ ++F Sbjct: 12 RNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFVGLDNYHRLFFE 71 Query: 67 DSNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGF 126 D F S W T K M +K+ ++LR FF+P ++ +I+GF Sbjct: 72 DEQFRASFWITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFMPNLIGGLILGF 131 Query: 127 IWKFIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSV 186 IW+FI+++GF S+G TGWS F L WLG AF I+ V+IWQ G+ +VIYIA LQ+V Sbjct: 132 IWQFIYVKGFASIGALTGWSLFELPWLGDAQTAFWGIVIVAIWQGGGYVMVIYIAALQNV 191 Query: 187 PDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXXXX 246 P DL EAA +DGA ++ ITLP++ PSITI +F+ ++ S KVFD LSL Sbjct: 192 PTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTNLSLTNGGPFKS 251 Query: 247 XYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVEA 296 +A +IY ++F NN YG G+AKA+I FL V +T+ Q+ V K+REVEA Sbjct: 252 TEMLALNIYTESFVNNNYGLGSAKAVIFFLVVAAITVTQVYVTKKREVEA 301 >B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/276 (42%), Positives = 174/276 (63%) Query: 21 PVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTGDSNFANSAWFTIKX 80 P L+ + IPFVM + YS T WNG+S + ++VGLDNF+QIFT DS FA S WFT K Sbjct: 18 PALLFFGITIIIPFVMGMYYSFTDWNGVSGNVEWVGLDNFKQIFTNDSAFAQSFWFTTKF 77 Query: 81 XXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGFIWKFIFMQGFNSLG 140 +++ +WLR FF+P ++ +++GFIW+FIF++GF ++G Sbjct: 78 TIVGVLLTNLVGFFLAYFLTKNIRARNWLRTIFFMPNVIGGLLLGFIWQFIFIKGFATVG 137 Query: 141 ESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSVPDDLKEAATVDGAG 200 E+TG FF L WLG F I+ V +WQS G+ +VIYIA + +V ++ EAA +DGA Sbjct: 138 EATGIPFFNLPWLGDEVTGFWGIIMVFVWQSSGYLMVIYIASITNVSKEVMEAAEIDGAN 197 Query: 201 AMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXXXXXYSIAYDIYRDTFQ 260 + SI +PL+ P++T+ +F+A++ S K+FD+ LSL S+A ++Y + F Sbjct: 198 RFQVLKSIIVPLIMPAVTVCLFLAISWSFKMFDLNLSLTKGGPYRSTESLAMNVYNEAFL 257 Query: 261 NNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVEA 296 NN YG GTAK+LI FL V V+T+IQ+ + K++EVEA Sbjct: 258 NNRYGLGTAKSLIFFLVVAVITLIQVRLTKQKEVEA 293 >B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/290 (39%), Positives = 173/290 (59%) Query: 7 RRWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTG 66 ++ + L+F +F PV + AV +PF + YS T WNGI+ ++G DN+ ++FT Sbjct: 7 KKVKRGLEFWMFVGPVFLVFAVIVLVPFFNGVMYSFTDWNGITGELNWIGFDNYVRLFTV 66 Query: 67 DSNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGF 126 D F S W T K +++ ++LR FF+P ++ +I+GF Sbjct: 67 DEQFQQSFWLTTKYTVVAVVLTNLVGFILAFLLTQNIRTRNFLRTIFFMPNLIGGLILGF 126 Query: 127 IWKFIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSV 186 +W+FI+++GF S+GE TGWS F L WLG F I+ VSIWQ G+ +VIYIA LQ+V Sbjct: 127 VWQFIYVKGFASIGELTGWSLFELPWLGDARTGFWGIVIVSIWQGGGYIMVIYIAALQNV 186 Query: 187 PDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXXXXX 246 P +L EAA +DGA + +IT+PL+ PS+TI +F+ ++ S K+FD LSL Sbjct: 187 PQELIEAAKIDGANRLSTLRNITIPLIMPSVTICLFLTISWSFKLFDTNLSLTNGGPFKS 246 Query: 247 XYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVEA 296 +A +IY+++F NN G G+AKA+I F+ V +T+ Q+ + K+REVEA Sbjct: 247 TEMLALNIYKESFTNNNLGLGSAKAIIFFVVVAAITVTQVYLTKKREVEA 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,540,881,751 Number of extensions: 56576723 Number of successful extensions: 274353 Number of sequences better than 1.0e-05: 5467 Number of HSP's gapped: 266756 Number of HSP's successfully gapped: 5469 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)