BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0023.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9K8.1 B1D9K8_9BACL Binding-protein-dependent transport system... 428 e-118 Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system pe... 243 1e-62 A6CLU7.1 A6CLU7_9BACI Multiple sugar-binding transport system pe... 232 2e-59 B3KDP8.1 B3KDP8_9BACI Binding-protein-dependent transport system... 221 8e-56 B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport system... 218 4e-55 >B1D9K8.1 B1D9K8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/264 (79%), Positives = 226/264 (85%) Query: 4 NNTKAGRXXXXXXXXXXXXXXXXXXXXXXXNSLKSFSEVMTDVIALPQHLALSNYSYVWK 63 +KAGR NS KSF EVMTDVIALP LA NYS+VW Sbjct: 3 RQSKAGRIILEVVMVLFSLLFLYPLFLAINNSFKSFGEVMTDVIALPSKLAFGNYSHVWS 62 Query: 64 FINYPRLFLNNFIITGLGLLGIVFISSIAAYKLARTKSRLSGIIYFLCIMPMLIPFQSIM 123 FINYP+LFLNNF+ITG+GL+GIVF+SSIAAYKLARTKSR SG +Y LCIMPMLIPFQSIM Sbjct: 63 FINYPKLFLNNFVITGVGLIGIVFVSSIAAYKLARTKSRWSGFLYLLCIMPMLIPFQSIM 122 Query: 124 LTVLQTAKNLNLSESTWGLGLLYWGFGAPLAVFIYHGFVKGIPTEIDESATIDGASSFRL 183 LTVLQ +K+L+++ESTWGLGLLYWGFGAPLAVFIYHGFVKGIP EIDESATIDGAS FRL Sbjct: 123 LTVLQLSKDLHITESTWGLGLLYWGFGAPLAVFIYHGFVKGIPKEIDESATIDGASGFRL 182 Query: 184 FFSVIFPLLKSVTTTIVIIDVMWIWNDFLLPLLMVNGSPDTKTLTLAAYTFVGQYTSDWQ 243 FFSVIFPLLKSVTTTI+IIDVMW+WNDFLLPLLMVNGSPDTKTLTLAAYTFVGQYTSDWQ Sbjct: 183 FFSVIFPLLKSVTTTIIIIDVMWMWNDFLLPLLMVNGSPDTKTLTLAAYTFVGQYTSDWQ 242 Query: 244 YAMTAMVMAVLPSIIVFIFLQKYI 267 YAMTAMVMAVLPSI+VFIFLQKYI Sbjct: 243 YAMTAMVMAVLPSIVVFIFLQKYI 266 >Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system permease Length = 275 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 170/234 (72%), Gaps = 1/234 (0%) Query: 34 NSLKSFSEVMTDVIALPQHLALSNYSYVWKFINYPRLFLNNFIITGLGLLGIVFISSIAA 93 NS+KSF+E++ D A P+ + +NYS VW+ IN+PR F N+ IIT L +G+V ISS+AA Sbjct: 33 NSVKSFAEILLDAAAFPKEVLFANYSKVWEIINFPRAFWNSLIITVLSNIGLVIISSMAA 92 Query: 94 YKLARTKSRLSGIIYFLCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGLGLLYWGFGAPL 153 +K+ RT R S I++ L + M+IPFQ++M+ +++ LN++ S GL ++Y+GFG PL Sbjct: 93 WKMVRTPGRFSKILFILFVSAMVIPFQTVMIPLMKLGGALNMTNSIPGLIMMYFGFGVPL 152 Query: 154 AVFIYHGFVKGIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWNDFLL 213 ++F+YHGFVK +P EI+ESA IDG S F +F+ ++FPLLK +T T+VI++ +WIWNDFLL Sbjct: 153 SLFLYHGFVKTVPREIEESALIDGCSQFGVFWRIVFPLLKPITVTVVILNTLWIWNDFLL 212 Query: 214 PLLMVNGSPDTKTLTLAAYTFVGQYTSDWQYAMTAMVMAVLPSIIVFIFLQKYI 267 PLL++ + + +T+ LA +F QYT W + A+V+ + P II F+FLQK+I Sbjct: 213 PLLVLQDA-ELRTIPLATSSFFAQYTKQWDMGLAALVLGITPVIIFFLFLQKHI 265 >A6CLU7.1 A6CLU7_9BACI Multiple sugar-binding transport system permease Length = 275 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 106/234 (45%), Positives = 167/234 (71%), Gaps = 1/234 (0%) Query: 34 NSLKSFSEVMTDVIALPQHLALSNYSYVWKFINYPRLFLNNFIITGLGLLGIVFISSIAA 93 NS+K F+ ++ D A P+ SNY+ VW+ IN+PR F N+ +IT +G+V ISS+AA Sbjct: 33 NSVKPFAAILIDAAAWPKEFLFSNYAKVWEIINFPRAFWNSLVITVFSNIGLVIISSMAA 92 Query: 94 YKLARTKSRLSGIIYFLCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGLGLLYWGFGAPL 153 +K+ RT + S I++ + + M+IPFQ++M+ +++ LNL+ S GL ++Y+GFG PL Sbjct: 93 WKMVRTPGKFSKILFIIFVSAMVIPFQTVMIPLMKLGGALNLTNSIPGLIIMYFGFGVPL 152 Query: 154 AVFIYHGFVKGIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWNDFLL 213 ++F++HGFVK +P EI+ESA IDG S F +F+ ++FPLLK +T T++I++ +WIWND+LL Sbjct: 153 SLFLFHGFVKTVPMEIEESAMIDGCSQFGVFWRIVFPLLKPITVTVIILNTLWIWNDYLL 212 Query: 214 PLLMVNGSPDTKTLTLAAYTFVGQYTSDWQYAMTAMVMAVLPSIIVFIFLQKYI 267 PLL++ + + +T+ LAA +F QYT W + A+V+ + P II F+FLQK+I Sbjct: 213 PLLVLQDA-ELRTIPLAASSFFAQYTKQWDMGLAALVLGITPVIIFFLFLQKHI 265 >B3KDP8.1 B3KDP8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 279 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 157/234 (67%), Gaps = 1/234 (0%) Query: 34 NSLKSFSEVMTDVIALPQHLALSNYSYVWKFINYPRLFLNNFIITGLGLLGIVFISSIAA 93 NS+KS ++M D P NYS W+ +P F N+ IIT + L I +S++AA Sbjct: 36 NSVKSLGDIMVDAANWPTAFHFDNYSKAWEMTRFPEAFTNSIIITVISNLIIALLSAMAA 95 Query: 94 YKLARTKSRLSGIIYFLCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGLGLLYWGFGAPL 153 Y++ R+ +R + I++ L + M+IPFQSIM+ +LQ L ++ S GL L Y G G PL Sbjct: 96 YRMVRSNTRFNRIVFMLFVSAMVIPFQSIMIPLLQVINFLGVNNSIVGLILSYLGLGIPL 155 Query: 154 AVFIYHGFVKGIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWNDFLL 213 +VF++HGFVKGIP EI+E+AT+DGAS FR+F ++ P+LK + T++I++ +W+WND+LL Sbjct: 156 SVFLFHGFVKGIPLEIEEAATVDGASPFRVFARIVMPMLKPMMVTVIILNCLWVWNDYLL 215 Query: 214 PLLMVNGSPDTKTLTLAAYTFVGQYTSDWQYAMTAMVMAVLPSIIVFIFLQKYI 267 P L++ SP+ +T+ LA + F GQY+ W A+ A+V+ + P II F+ LQKYI Sbjct: 216 PSLILQ-SPELRTIPLATFAFFGQYSKQWDMALPALVLGITPIIIFFLSLQKYI 268 >B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 278 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 161/234 (68%), Gaps = 1/234 (0%) Query: 34 NSLKSFSEVMTDVIALPQHLALSNYSYVWKFINYPRLFLNNFIITGLGLLGIVFISSIAA 93 NS+K+F E++TD LP SNYS W N+P+ F N+ ++T L + +S++ A Sbjct: 35 NSVKTFGELLTDSAGLPTTFEWSNYSRAWDITNFPQAFWNSLVVTVASNLLLAMLSAMTA 94 Query: 94 YKLARTKSRLSGIIYFLCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGLGLLYWGFGAPL 153 Y++ R +R + I++ L + M+IPFQSIM+ +++ L ++ S +GL + Y GFG PL Sbjct: 95 YQMVRRNTRFNQIMFALFVAAMVIPFQSIMIPLVKVTATLGINNSLYGLIICYLGFGVPL 154 Query: 154 AVFIYHGFVKGIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWNDFLL 213 +VF++HGFVK IP EI+E+AT+DG+S + +FF V+FPL+K + T++I++ +WIWND+LL Sbjct: 155 SVFLFHGFVKSIPMEIEEAATVDGSSGYGVFFRVVFPLMKPMFVTVIILNTLWIWNDYLL 214 Query: 214 PLLMVNGSPDTKTLTLAAYTFVGQYTSDWQYAMTAMVMAVLPSIIVFIFLQKYI 267 P L++ S + +T+ +A + F GQYT W A+ A+V+ ++P I+ F+ +QKYI Sbjct: 215 PSLILQ-SAELRTIPIATFAFFGQYTKQWDLALPALVLGIMPVILFFLAMQKYI 267 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,356,525,560 Number of extensions: 52131741 Number of successful extensions: 212572 Number of sequences better than 1.0e-05: 6232 Number of HSP's gapped: 206851 Number of HSP's successfully gapped: 6234 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)