BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0020.p (344 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDC8.1 B1DDC8_9BACL ABC-type sugar transport system periplasmi... 453 e-125 C4IBC3.1 C4IBC3_CLOBU Putative liporotein 189 2e-46 C4IBC4.1 C4IBC4_CLOBU Putative liporotein 181 7e-44 C4G4L3.1 C4G4L3_ABIDE Putative uncharacterized protein 152 7e-35 B1D9U7.1 B1D9U7_9BACL Extracellular solute-binding protein family 1 140 3e-31 >B1DDC8.1 B1DDC8_9BACL ABC-type sugar transport system periplasmic component-like protein Length = 527 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/279 (77%), Positives = 246/279 (88%), Gaps = 1/279 (0%) Query: 53 DSGAPDTSKEVKLKMILVGGQPGDYDKVFGELNTKLKEKINATVETEFLDWSDWTQKYPL 112 D+GA DTS+E+K+KM++VGG+P DYD VF E+N KLKEK+NAT++ EFLDW+DWTQKYPL Sbjct: 54 DAGAVDTSQELKIKMLMVGGKPVDYDAVFAEINKKLKEKVNATIDAEFLDWADWTQKYPL 113 Query: 113 KFAANEDFDLVYTANWAFYNDQALKGGFLELTDDMLQKYMPKTWEAMPKVNWEQAKVNGK 172 KFAANEDFD+ YTANWAFYNDQALKGGF+ELTDDML K+MP+T +AMP V WEQ+KVNGK Sbjct: 114 KFAANEDFDIAYTANWAFYNDQALKGGFMELTDDMLNKFMPQTMKAMPAVAWEQSKVNGK 173 Query: 173 LYMVPNNNVEVTDKVVLYREDLRKKYNLPEINNPETYANYLKTVAKNEKGMNAFGAKPAD 232 +MVPNNN EVTDK VL REDLRKKYNL +N+PETYA YLK +A NEKG+N F AK AD Sbjct: 174 QFMVPNNNPEVTDKAVLIREDLRKKYNLEPVNSPETYAAYLKAIAANEKGINGFNAKGAD 233 Query: 233 GWKFHELDQTLLEQNNNFNLVDANLLPLAYKLDDASGKVFNIYDTPEFTSLLKYYKDLAD 292 GWK+HELDQ LLEQ N+FNLVD + +PLAYKLDDA+GKVFNIYDTPEF SLL YYKDLAD Sbjct: 234 GWKWHELDQILLEQANDFNLVDYS-MPLAYKLDDATGKVFNIYDTPEFKSLLAYYKDLAD 292 Query: 293 NGAWSKNVVSNKNDVWQDIKAEKVSSYAHNLGTVAGNLA 331 NGAWSKN+VSNKNDVWQDIKA K +SYA NLGTVA NLA Sbjct: 293 NGAWSKNIVSNKNDVWQDIKAGKTASYAQNLGTVAMNLA 331 >C4IBC3.1 C4IBC3_CLOBU Putative liporotein Length = 514 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 105/273 (38%), Positives = 160/273 (58%), Gaps = 6/273 (2%) Query: 57 PDTSKEVKLKMILVGGQPGDYDKVFGELNTKLKEKINATVETEFLDWSDWTQKYPLKFAA 116 P V LKM L+G +P D+D+V+G++N +KEKINAT++ FL WSD T KY L F + Sbjct: 40 PSKLDPVTLKMYLIGDKPKDFDEVYGKVNEIMKEKINATLDISFLPWSDMTTKYQLLFQS 99 Query: 117 NEDFDLVYTAN-WAFYNDQALKGGFLELTDDMLQKYMPKTWEAMPKVNWEQAKVNGKLYM 175 E+FD+++TA+ W +Y+ A K GF E+TDDML++Y P +E PK WEQAK+N K YM Sbjct: 100 GENFDIIFTASSWGYYSQVATKNGFYEITDDMLKEYAPNIYENEPKEAWEQAKINDKKYM 159 Query: 176 VPNNNVEVTDKVVLYREDLRKKYNLPEINNPETYANYLKTVAKN-EKGMNAFGAKPADGW 234 +P++ VE +V R DL KKY + +I N + Y+ V+K+ E G+ A+G Sbjct: 160 IPSDQVEYGTRVFGARGDLMKKYGIEKIENYDDLEAYMDAVSKDTESGIKVI----ANGG 215 Query: 235 KFHELDQTLLEQNNNFNLVDANLLPLAYKLDDASGKVFNIYDTPEFTSLLKYYKDLADNG 294 + ++E+ + + + ++D SGK+F D PE+ K K+ AD G Sbjct: 216 GQNLQYPYMMEKYAFGGIAGVPTPSIGFDVNDQSGKIFAYVDRPEYLEYAKKMKEFADKG 275 Query: 295 AWSKNVVSNKNDVWQDIKAEKVSSYAHNLGTVA 327 WS + +S+K +D A K ++ N+G+VA Sbjct: 276 YWSSDSISSKATRDEDFMAGKTATMVWNIGSVA 308 >C4IBC4.1 C4IBC4_CLOBU Putative liporotein Length = 512 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 99/267 (37%), Positives = 156/267 (58%), Gaps = 6/267 (2%) Query: 63 VKLKMILVGGQPGDYDKVFGELNTKLKEKINATVETEFLDWSDWTQKYPLKFAANEDFDL 122 V+LKM L+G +P D++ V+ ++N +KEKINA + EFL W+D +KYPL F + E FDL Sbjct: 43 VQLKMFLIGDKPNDFNDVYDKVNKIMKEKINAELSVEFLSWADMDEKYPLLFQSGEQFDL 102 Query: 123 VYTA-NWAFYNDQALKGGFLELTDDMLQKYMPKTWEAMPKVNWEQAKVNGKLYMVPNNNV 181 ++TA +W YN+ A + GF ELT DM+++Y P +E PK W+QAKVN K+YM+P + + Sbjct: 103 IFTAESWGHYNEVATRNGFYELTLDMVKEYAPDIYENEPKEAWDQAKVNNKIYMIPGDQI 162 Query: 182 EVTDKVVLYREDLRKKYNLPEINNPETYANYLKTVAKNEKGMNAFGAKPADGWKFHELDQ 241 E +V R DL +KY + +INN + Y+ V+++++ G K L Sbjct: 163 EYGTRVFGIRGDLARKYGIDDINNYDDLEKYMNAVSQDKEN----GVKVIANGGGQNLQY 218 Query: 242 TLLEQNNNFNLVDANLLP-LAYKLDDASGKVFNIYDTPEFTSLLKYYKDLADNGAWSKNV 300 + + N F LV+ +P +AYK+++ G +F + DT E+ + K+ A+ G WS + Sbjct: 219 PYMLEKNEFQLVEGTPIPTIAYKVNNNDGNIFAVVDTEEYKNYALKMKEFAERGYWSADS 278 Query: 301 VSNKNDVWQDIKAEKVSSYAHNLGTVA 327 + K +D K + NLG+VA Sbjct: 279 IVRKATRDEDFINGKSAVMVWNLGSVA 305 >C4G4L3.1 C4G4L3_ABIDE Putative uncharacterized protein Length = 530 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 114/226 (50%), Gaps = 5/226 (2%) Query: 1 MTNKKKKLTVTLATMMALGTILSACXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGA---P 57 M +K L L+ MAL L AC +G Sbjct: 1 MRKLRKWLAAGLSMTMALA--LVACGGGTKNETKSSAGGSTVKQASVQSKTSSAGTESKA 58 Query: 58 DTSKEVKLKMILVGGQPGDYDKVFGELNTKLKEKINATVETEFLDWSDWTQKYPLKFAAN 117 T + V LKM +G D D VF E+N L EKINA +E +L W D+ Q+YPL F++ Sbjct: 59 STLEPVTLKMYFLGEPQSDNDMVFEEINKLLTEKINAKIEPHYLSWGDYQQRYPLLFSSG 118 Query: 118 EDFDLVYTANWAFYNDQALKGGFLELTDDMLQKYMPKTWEAMPKVNWEQAKVNGKLYMVP 177 EDFD++YTA WAFY + A KGGF E+T +M++KY P A+P+ W+ +V GK YM+P Sbjct: 119 EDFDMIYTAAWAFYAETASKGGFYEITPEMVEKYCPLAKAALPEAAWKNTQVAGKNYMIP 178 Query: 178 NNNVEVTDKVVLYREDLRKKYNLPEINNPETYANYLKTVAKNEKGM 223 NN R DLRKKY + + E +++ V +NE GM Sbjct: 179 QNNYWANHYGAFVRGDLRKKYGMEPLKTVEDIEKFMQKVKENESGM 224 >B1D9U7.1 B1D9U7_9BACL Extracellular solute-binding protein family 1 Length = 532 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/329 (27%), Positives = 157/329 (47%), Gaps = 9/329 (2%) Query: 1 MTNKKKKLTVTLATMMALGTILSACXXXXXXXXXXXXXXXXXXXXXXXX-XXXDSGAPDT 59 M K K + L + + ++L+AC D+ PDT Sbjct: 1 MKRKIKTMGTVLVSTAIMASMLAACGSDNNNNSNKSSNASANPGTEASSNTGTDAKTPDT 60 Query: 60 SKEVKLKMILVGGQPGDYDKVFGELNTKLKEKINATVETEFLDWSDWTQKYPLKFAANED 119 SK+V+L L+G D +KV E N L++ +N TV+ F W+DW KY L A+ E Sbjct: 61 SKKVQLTWYLLGDPAPDQEKVVAEWNKMLEQDLNTTVKLNFTTWTDWQTKYNLLLASGEK 120 Query: 120 FDLVYTANWAFYNDQALKGGFLELTDDMLQKYMPKTWEAMPKVNWEQAKVNGKLYMVPNN 179 D+++ ++WA + A +G F+ L +D+L Y P TW ++ + +W++A VN K+Y +P Sbjct: 121 VDMIFASSWADFYKFANQGAFMPL-NDLLPTYAPTTWSSVSEQDWKEATVNDKIYAIPAT 179 Query: 180 NVEVTDKVVLYREDLRKKYNLPEINNPETYANYLKTVAKNEKGMNAFGAKPADGWKFHEL 239 E T ++YR+D R++ LPEI + ++ YL V K++ G P +G ++E+ Sbjct: 180 YPEYTPDGLVYRDDWRQELGLPEIKDVDSIEAYLDGVKKSK------GITPINGKAYNEV 233 Query: 240 DQTLLEQNNNFNLVDANLLPLAYKLDDASGKVFNIYDTPEFTSLLKYYKDLADNGAWSKN 299 T+ + + + + +A K D + TPEF +K K ++ G W + Sbjct: 234 -FTMFKAFEGYQQIGGDSGVIAAKSYDTPRDIVAYPFTPEFEQWVKKMKTWSEKGFWKSD 292 Query: 300 VVSNKNDVWQDIKAEKVSSYAHNLGTVAG 328 +S++ + IK + + Y N G Sbjct: 293 TLSDQKEAGDAIKTGQGAVYWRNAPGAGG 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,000,428,488 Number of extensions: 84689620 Number of successful extensions: 157542 Number of sequences better than 1.0e-05: 156 Number of HSP's gapped: 157331 Number of HSP's successfully gapped: 156 Length of query: 344 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 208 Effective length of database: 1,779,438,163 Effective search space: 370123137904 Effective search space used: 370123137904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)