BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0019.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDC9.1 B1DDC9_9BACL Binding-protein-dependent transport system... 387 e-106 C4IBC5.1 C4IBC5_CLOBU Protein LplC 277 9e-73 C4G755.1 C4G755_ABIDE Putative uncharacterized protein 262 4e-68 C4G4L4.1 C4G4L4_ABIDE Putative uncharacterized protein 257 8e-67 B1D9U6.1 B1D9U6_9BACL Binding-protein-dependent transport system... 254 9e-66 >B1DDC9.1 B1DDC9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 305 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/291 (65%), Positives = 223/291 (76%) Query: 6 NTDRLTLSIIGYATLIVLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAYGLL 65 D + L +IGY + +LAV C +PF KG+QLIP+ +STEAY +L Sbjct: 15 QADIILLRVIGYIFISLLAVICFIPFLLVISSSLSQESSIVEKGYQLIPAVWSTEAYSVL 74 Query: 66 FKYPAEMLRAYXXXXXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXXXXX 125 FKYP +MLRAY F+T+MTAYVL R+DF+WR++ Sbjct: 75 FKYPEQMLRAYGVTIAVTAIGTLVGLFVTAMTAYVLQRKDFRWRNQFAFFFFFTTLFSGG 134 Query: 126 XVPSYLLIINFLHLKDTLLVLILPMLMNVFYIIVMKSFMSSIPDAITESAKIDGAGDFRI 185 VP Y+LI+ +L LKD L+VLILPML+NVFYIIVMK+FMSSIP+AITESAKIDGAGDFRI Sbjct: 135 LVPWYMLIVTYLDLKDKLIVLILPMLLNVFYIIVMKTFMSSIPEAITESAKIDGAGDFRI 194 Query: 186 FLQLIVPLSKPALATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDGMRKA 245 F+QLI+PLSKP LATIGLFIALAYWNDWYNALL++S +LMPLQYYLYKMLGNMDGMRKA Sbjct: 195 FVQLILPLSKPVLATIGLFIALAYWNDWYNALLFVSDEKLMPLQYYLYKMLGNMDGMRKA 254 Query: 246 MMASGAVVNTDLPTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVKG 296 M+ASGAVV T++PTESLKMAMTIVATGPILLAYPFIQ+YFVQGLT+GAVKG Sbjct: 255 MVASGAVVTTNIPTESLKMAMTIVATGPILLAYPFIQRYFVQGLTLGAVKG 305 >C4IBC5.1 C4IBC5_CLOBU Protein LplC Length = 296 Score = 277 bits (708), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 133/290 (45%), Positives = 190/290 (65%), Gaps = 2/290 (0%) Query: 8 DRLTLSIIGYATLIVLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAYGLLFK 67 D + I Y + V+++ C++PF GF L P++FS EAY K Sbjct: 6 DVKVFNTISYTVIAVISLLCLIPFLLVLMGSITDEQEIIQSGFSLFPNSFSLEAYRTALK 65 Query: 68 YPAEMLRAYXXXXXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXXXXXXV 127 P ++RAY F+ +MT YVL R+DFKWR++ V Sbjct: 66 DPMAIVRAYGVTISLTVIGTILGLFIVAMTGYVLQRKDFKWRNKFSFFFYFTTLFSGGLV 125 Query: 128 PSYLLIINFLHLKDTLLVLILPMLMNVFYIIVMKSFMSSIPDAITESAKIDGAGDFRIFL 187 P Y+L++ +L LKD+ L ++LP L++VF II+MKS+++SIP ++ E+AKIDGAGDF+IF+ Sbjct: 126 PWYILMVRYLDLKDSYLAMLLPPLLSVFNIILMKSYLNSIPQSLIEAAKIDGAGDFQIFM 185 Query: 188 QLIVPLSKPALATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDGMRKAMM 247 ++I+PLSKPALAT+GLFIA+ YWNDWYN +L+I+ +L LQYYLYK++ N++ + + Sbjct: 186 KVILPLSKPALATVGLFIAIGYWNDWYNCMLFINNEKLYSLQYYLYKIVNNVEAYKTILS 245 Query: 248 ASGAVVNT--DLPTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVK 295 +G + D+P+ESLKMA+TI+ TGPI+L YPFIQKYFVQG+TIGAVK Sbjct: 246 QTGGSIGAAIDMPSESLKMALTIIVTGPIILLYPFIQKYFVQGVTIGAVK 295 >C4G755.1 C4G755_ABIDE Putative uncharacterized protein Length = 309 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 129/283 (45%), Positives = 180/283 (63%), Gaps = 1/283 (0%) Query: 14 IIGYATLIVLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAYGLLFKYPAEML 73 I+ Y + ++A+ CI+PF +G+ L + FST+AY L+F+ P + Sbjct: 28 ILAYVCVGLMALICIIPFIVLISGSFTSENYIRTQGYSLFINEFSTKAYELIFRNPITVF 87 Query: 74 RAYXXXXXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXXXXXXVPSYLLI 133 RAY L +MTAYV+ R+DFK+R+ V +Y+ Sbjct: 88 RAYGVSILITGVGTVLGTLLITMTAYVICRKDFKYRNHFSFFFYFTTLFNGGMVSTYIFY 147 Query: 134 INFLHLKDTLLVLILPMLMNVFYIIVMKSFMSSIPDAITESAKIDGAGDFRIFLQLIVPL 193 I +L LKD+L LILP L NVFY+++M+SF+++IP ++ E++KIDGAG++RIF Q++ PL Sbjct: 148 IQYLRLKDSLWALILPGLFNVFYLLIMRSFVNTIPPSLIEASKIDGAGEYRIFFQVVFPL 207 Query: 194 SKPALATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDGMRKAMMASGAVV 253 KP LAT+GLF+AL YWNDWYNA+LYI+ + PLQY LY +L + + SG V Sbjct: 208 LKPGLATVGLFMALGYWNDWYNAMLYINSNVKFPLQYMLYNLLQQTQALARIASQSGISV 267 Query: 254 NTDLPTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVKG 296 DLP+ SLKMAM IVATGPILL YPF+QKYFV+G+T+G+VKG Sbjct: 268 -ADLPSNSLKMAMAIVATGPILLVYPFVQKYFVKGITVGSVKG 309 >C4G4L4.1 C4G4L4_ABIDE Putative uncharacterized protein Length = 298 Score = 257 bits (657), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 129/295 (43%), Positives = 182/295 (61%), Gaps = 1/295 (0%) Query: 3 KRVNTDRLTLSIIGYATLIVLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAY 62 K+++ + I Y+ LI L++ C++PF GF LIP +S EA+ Sbjct: 4 KKISKADVGFGIFAYSILIFLSLCCLIPFLFIISGAFSSEQSILEHGFSLIPIEYSLEAF 63 Query: 63 GLLFKYPAEMLRAYXXXXXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXX 122 +F P + AY F +SM AYVL R++F+ R+ Sbjct: 64 RAVFAVPENIFNAYGVTIFITIVGTVVGIFFSSMAAYVLQRKEFRPRTFFSFFFYFTTIF 123 Query: 123 XXXXVPSYLLIINFLHLKDTLLVLILPMLMNVFYIIVMKSFMS-SIPDAITESAKIDGAG 181 VP Y+L+I + ++K+ ++ LILP L NVFYII+++SF+S SIPD+ITESAKIDGAG Sbjct: 124 NGGIVPWYILMIRYFNMKNNIMALILPNLFNVFYIIIIRSFISNSIPDSITESAKIDGAG 183 Query: 182 DFRIFLQLIVPLSKPALATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDG 241 +F IF+++I+PLSKP LAT+GLF AL YWNDW+NA+L++ +L+PLQYYLY+ML + Sbjct: 184 EFHIFVKMILPLSKPILATMGLFTALNYWNDWFNAMLFVDAQKLIPLQYYLYRMLSQISM 243 Query: 242 MRKAMMASGAVVNTDLPTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVKG 296 +R + + P ES KMAMT+V GPILL YPF+Q++FV G+ IGAVKG Sbjct: 244 LRNLIAKVPQLAAVTPPEESFKMAMTLVTIGPILLLYPFVQRFFVSGIMIGAVKG 298 >B1D9U6.1 B1D9U6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 295 Score = 254 bits (648), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 133/295 (45%), Positives = 180/295 (61%), Gaps = 3/295 (1%) Query: 4 RVNTDRLTL--SIIGYATLIVLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEA 61 ++ +R T+ +IIGY + +L V C++PF KGF LIP TFS +A Sbjct: 2 KIKMERATIVFNIIGYVLITILTVLCLLPFLLIVSGSFTPEIQIISKGFSLIPETFSLDA 61 Query: 62 YGLLFKYPAEMLRAYXXXXXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXX 121 Y F P ++L Y FLTSM +VLSR+DFK+R + Sbjct: 62 YKAAFSNPKQILEGYKVTIFITVAGTAIGLFLTSMAGFVLSRKDFKYRDQLSFFIYFTTL 121 Query: 122 XXXXXVPSYLLIINFLHLKDTLLVLILPMLMNVFYIIVMKSFMSSIPDAITESAKIDGAG 181 +P Y+LI L LKDT + LI+P L++ + II+MK+FM SIPD+I ESAKIDGAG Sbjct: 122 FSGGLIPWYILITKHLDLKDTYMALIVPSLLSAWNIILMKNFMKSIPDSIVESAKIDGAG 181 Query: 182 DFRIFLQLIVPLSKPALATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDG 241 +F I+L+LI+PLS P LATIGLF+AL YWNDW+ A L+I+ PLQ+ LYK+L + Sbjct: 182 EFTIYLRLILPLSGPGLATIGLFMALGYWNDWFMANLFITSESHYPLQFLLYKILASA-A 240 Query: 242 MRKAMMASGAVVNTDLPTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVKG 296 + K +A P E+LKMA ++ATGPI+ YPF+Q++FV+GLTIGAVKG Sbjct: 241 VLKTNVAGNLSPTFQPPAETLKMAAAVIATGPIVFLYPFVQRFFVKGLTIGAVKG 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,295,286,564 Number of extensions: 41604687 Number of successful extensions: 146199 Number of sequences better than 1.0e-05: 5039 Number of HSP's gapped: 141198 Number of HSP's successfully gapped: 5039 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)