BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0018.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDD0.1 B1DDD0_9BACL Binding-protein-dependent transport system... 514 e-144 C4IBC6.1 C4IBC6_CLOBU ABC transporter membrane-spanning permease... 397 e-109 C4G4L5.1 C4G4L5_ABIDE Putative uncharacterized protein 329 2e-88 B1D571.1 B1D571_9BACL Binding-protein-dependent transport system... 327 1e-87 B1D9U5.1 B1D9U5_9BACL Binding-protein-dependent transport system... 320 1e-85 >B1DDD0.1 B1DDD0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust. Identities = 251/304 (82%), Positives = 276/304 (90%) Query: 11 QHGFWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYTDGILHSPWNGLDNF 70 + GFW + +TLLLML PAV FF++FAYVPMAGIVLAFKQYN T GI SPWNG+ NF Sbjct: 3 RRGFWGYALQNKTLLLMLAPAVFFFILFAYVPMAGIVLAFKQYNNTGGIFGSPWNGISNF 62 Query: 71 RFFFGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKITQTILFLPYFI 130 RFFF SG+AW VTRNTALYNIAFI+VNNVLQI A I LFE GKWFRK+TQT+LFLPYFI Sbjct: 63 RFFFESGNAWMVTRNTALYNIAFIIVNNVLQIAAAIFLFEAVGKWFRKLTQTMLFLPYFI 122 Query: 131 SWVVVGAIAYNLFNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVILVVVSAWKALGYGTIM 190 SWVVVGAIAYNLFN+DVGT+NVLLK +GMQP+DIYNT +YWPVILV+VSAWK LGYG++M Sbjct: 123 SWVVVGAIAYNLFNYDVGTLNVLLKAVGMQPVDIYNTPSYWPVILVLVSAWKTLGYGSVM 182 Query: 191 YLAAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNIFRGDFGMFYN 250 YLAAIT ID EMYEAAEIDGAN+FQRI +IT+PNL PTVIILVLLA+GNIFRGDFGMFYN Sbjct: 183 YLAAITGIDNEMYEAAEIDGANVFQRIWRITLPNLFPTVIILVLLAVGNIFRGDFGMFYN 242 Query: 251 MVGNNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLANYAVRKYDKD 310 MVGNNGLLFSSTDVIDTFVFRSLTTSNEIG+SAAAGFYQS+LGFATI+LANYAVRKYDKD Sbjct: 243 MVGNNGLLFSSTDVIDTFVFRSLTTSNEIGLSAAAGFYQSVLGFATILLANYAVRKYDKD 302 Query: 311 RALF 314 ALF Sbjct: 303 HALF 306 >C4IBC6.1 C4IBC6_CLOBU ABC transporter membrane-spanning permease-sugar transport Length = 326 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/309 (60%), Positives = 242/309 (78%) Query: 6 EMKQKQHGFWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYTDGILHSPWN 65 + K + F +++ + L+LML PA+L+FL+F+Y+PM G +LAFK YN+ DGI SPW Sbjct: 18 DKKNRLRKFMLTIRRNKVLILMLLPAILYFLIFSYIPMGGTILAFKNYNFRDGIFGSPWV 77 Query: 66 GLDNFRFFFGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKITQTILF 125 GLDNF++FF SG AW VTRNT LYN+AFI VN +LQ+ IL+ E+ GK+F+K+TQT +F Sbjct: 78 GLDNFKYFFISGQAWIVTRNTILYNVAFITVNTILQMGLAILISEIGGKYFKKLTQTAMF 137 Query: 126 LPYFISWVVVGAIAYNLFNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVILVVVSAWKALG 185 LPYFISWVVVG IAYN+ N + GT+N ++ +G + + Y + WP I++ VSAWK +G Sbjct: 138 LPYFISWVVVGIIAYNMLNLENGTINSMIAKIGGEKFNFYGSTFVWPFIMIFVSAWKNVG 197 Query: 186 YGTIMYLAAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNIFRGDF 245 YGT++YLAAI IDTE YEAA+IDGANIFQRI K+T+P+LIPT+IIL LLAIGNIFRGDF Sbjct: 198 YGTVLYLAAIMGIDTETYEAAKIDGANIFQRIFKVTIPSLIPTMIILTLLAIGNIFRGDF 257 Query: 246 GMFYNMVGNNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLANYAVR 305 MFY ++GNNG LF++TDVIDTF FRSL S E+GMSAA+ YQS+ F TIM++N+ V+ Sbjct: 258 QMFYQIIGNNGPLFNATDVIDTFTFRSLIQSGEVGMSAASCLYQSVFCFITIMISNFLVK 317 Query: 306 KYDKDRALF 314 KYDKD +LF Sbjct: 318 KYDKDYSLF 326 >C4G4L5.1 C4G4L5_ABIDE Putative uncharacterized protein Length = 309 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 153/292 (52%), Positives = 212/292 (72%) Query: 23 TLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYTDGILHSPWNGLDNFRFFFGSGDAWRV 82 TL LM+ PAV+++L+FAY+PM G +LAFKQ+NY DGI+ SPW+G NF F F G ++V Sbjct: 18 TLYLMILPAVIYYLIFAYLPMGGTILAFKQFNYADGIIASPWSGFKNFEFLFSGGKIFKV 77 Query: 83 TRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKITQTILFLPYFISWVVVGAIAYNL 142 NT YN FIVVN +LQ+ ILL E+ K+F+K +Q+++FLPYFISWV+VG YNL Sbjct: 78 AFNTIAYNAVFIVVNLILQVGVAILLTEIKSKFFKKASQSVIFLPYFISWVIVGGFLYNL 137 Query: 143 FNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVILVVVSAWKALGYGTIMYLAAITSIDTEM 202 FN++ G++N +LK +G P+D+YN W +LV+ +AWK +GYG+++YLAAIT +D+EM Sbjct: 138 FNYEYGSLNTMLKAVGATPVDMYNDVGIWKYVLVIANAWKWVGYGSVIYLAAITGLDSEM 197 Query: 203 YEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNIFRGDFGMFYNMVGNNGLLFSST 262 YEAA IDGA ++I IT+P + P +II+ LL +G IFRGDF MFY + NN LL+ ST Sbjct: 198 YEAAAIDGAGRMRKIFSITLPLITPQIIIMTLLNVGRIFRGDFDMFYQVTANNPLLYDST 257 Query: 263 DVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLANYAVRKYDKDRALF 314 DVIDT+V RSL ++GM++AAG QSL+ ++ N V+++ KD ALF Sbjct: 258 DVIDTYVVRSLLQIQDVGMTSAAGLIQSLISLVILLGVNSLVKRFQKDYALF 309 >B1D571.1 B1D571_9BACL Binding-protein-dependent transport systems inner membrane component Length = 321 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 158/310 (50%), Positives = 221/310 (71%), Gaps = 5/310 (1%) Query: 6 EMKQKQHGFWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYTDGILHSPWN 65 E + FW++ +TLLLM PA+ FF+VFAY+PM G+ LAF QYNY DGI SP+ Sbjct: 16 ESSGRLRRFWNN----KTLLLMCLPAIAFFIVFAYLPMPGVYLAFIQYNYADGIFKSPFV 71 Query: 66 GLDNFRFFFGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKITQTILF 125 DNFRF +GD WR+T NT YN+AFI++ N+LQIF ILL E+ KWF+K+ QT+LF Sbjct: 72 AFDNFRFLVMNGDLWRLTFNTVAYNVAFILLGNLLQIFVAILLNELRRKWFKKVAQTLLF 131 Query: 126 LPYFISWVVVGAIAYNLFNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVILVVVSAWKALG 185 LP+FIS V++G IAYN+ ++D G +N LL +GM P+ +Y+ + WP I+V+ W++ G Sbjct: 132 LPHFISAVLIGLIAYNILSYDYGLLNHLLASIGMDPVKVYSNSHVWPFIIVITYLWQSTG 191 Query: 186 YGTIMYLAAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNIFRGDF 245 YG+I+Y AAI +D E+ EA+EIDGAN FQRI+ I +P L PT IIL+L ++G I +G+F Sbjct: 192 YGSIVYFAAIMGLDNEIIEASEIDGANAFQRIIYIVIPWLKPTFIILLLFSLGGIMKGNF 251 Query: 246 GMFYNMVG-NNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLANYAV 304 G+FYN+VG NN L+SSTD+I+T+VFRSL T+ + +A YQS+ GF ++ AN+ V Sbjct: 252 GLFYNLVGANNTALYSSTDIIETYVFRSLMTNFNFSIGSAVSLYQSVFGFVIVITANWLV 311 Query: 305 RKYDKDRALF 314 +K + +LF Sbjct: 312 KKASPENSLF 321 >B1D9U5.1 B1D9U5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 160/302 (52%), Positives = 221/302 (73%), Gaps = 1/302 (0%) Query: 13 GFWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYTDGILHSPWNGLDNFRF 72 GF+ ++ + R L LM+ PA+LFF+VFAYVPM G+ AF ++++ G+ + G NF F Sbjct: 3 GFFQELVRNRILFLMIAPALLFFIVFAYVPMVGVYYAFTRFSFDGGLFGGEFIGFKNFEF 62 Query: 73 FFGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKITQTILFLPYFISW 132 F SG W +T+NT LYNIAFI+++NVLQ+ I L E+ GKWF+K TQ+I+FLP+F+S+ Sbjct: 63 LFNSGVLWNLTKNTVLYNIAFIIISNVLQLACAIFLSELPGKWFKKSTQSIMFLPFFVSF 122 Query: 133 VVVGAIAYNLFNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVILVVVSAWKALGYGTIMYL 192 V+VGA +NLF+ + G VN +L LG+QP D Y A W I+V WK LGYGT++YL Sbjct: 123 VLVGAFVFNLFS-NAGVVNTMLTSLGLQPYDFYLHTAPWKYIIVFFHVWKGLGYGTVIYL 181 Query: 193 AAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNIFRGDFGMFYNMV 252 AAI S+ E +EAA+IDGANIF+R+ IT+P L+PT I+L+LL++G I +G F +FY ++ Sbjct: 182 AAIMSVSDEYHEAAKIDGANIFKRVRHITLPLLVPTFILLILLSLGGILKGQFDLFYQII 241 Query: 253 GNNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLANYAVRKYDKDRA 312 GNNG+L++STD+IDT+V+RSL + +IGM AAG YQSL GF I+L NY +RK KD A Sbjct: 242 GNNGMLYNSTDIIDTYVYRSLAVNFDIGMGTAAGLYQSLFGFVLIILVNYIIRKVQKDYA 301 Query: 313 LF 314 LF Sbjct: 302 LF 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,824,919,504 Number of extensions: 75119864 Number of successful extensions: 278184 Number of sequences better than 1.0e-05: 5554 Number of HSP's gapped: 273603 Number of HSP's successfully gapped: 5554 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)